PDB Chemical Component G6D

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for G6D

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C1 C2 1.538 1.531
C1 O5 1.416 1.429
C1 O1 1.403 1.429
C1 H1 1.100 1.091
O2 C2 1.426 1.429
O2 HO2 0.949 0.967
C2 C3 1.518 1.532
C2 H2 1.100 1.090
C3 O3 1.419 1.429
C3 C4 1.517 1.532
C3 H3 1.100 1.090
O3 HO3 0.950 0.967
C4 O4 1.420 1.429
C4 C5 1.526 1.531
C4 H4 1.100 1.089
O4 HO4 0.949 0.967
C5 O5 1.436 1.429
C5 C6 1.531 1.530
C5 H5 1.099 1.090
C6 H61 1.100 1.090
C6 H62 1.100 1.089
C6 H63 1.100 1.091
O1 HO1 0.950 0.967

Bond Angles for G6D

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C2 C1 O5 109.4 109.5
C2 C1 O1 110.4 109.4
C2 C1 H1 107.1 109.5
C1 C2 O2 110.9 109.6
C1 C2 C3 109.7 109.2
C1 C2 H2 108.1 109.5
O5 C1 O1 112.4 109.5
O5 C1 H1 108.6 109.5
C1 O5 C5 113.7 114.1
O1 C1 H1 108.8 109.5
C1 O1 HO1 109.5 114.0
C2 O2 HO2 109.5 114.0
O2 C2 C3 110.0 109.5
O2 C2 H2 109.6 109.5
C3 C2 H2 108.4 109.6
C2 C3 O3 110.2 109.6
C2 C3 C4 108.5 109.0
C2 C3 H3 109.0 109.5
O3 C3 C4 109.6 109.6
O3 C3 H3 110.4 109.5
C3 O3 HO3 109.5 114.0
C4 C3 H3 109.1 109.6
C3 C4 O4 109.1 109.5
C3 C4 C5 109.0 109.2
C3 C4 H4 109.2 109.5
O4 C4 C5 110.0 109.5
O4 C4 H4 110.5 109.5
C4 O4 HO4 109.5 113.9
C5 C4 H4 109.0 109.7
C4 C5 O5 109.4 109.4
C4 C5 C6 111.7 109.4
C4 C5 H5 108.1 109.5
O5 C5 C6 110.3 109.4
O5 C5 H5 109.3 109.5
C6 C5 H5 108.0 109.5
C5 C6 H61 109.5 109.5
C5 C6 H62 109.5 109.5
C5 C6 H63 109.5 109.4
H61 C6 H62 109.5 109.5
H61 C6 H63 109.5 109.5
H62 C6 H63 109.5 109.5

Torsion Angles for G6D

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O5 C1 C2 O1 124.2 120.0
O5 C1 C2 H1 242.5 240.0
C2 C1 O5 C5 300.1 298.8
O1 C1 C2 H1 118.3 120.0
C2 C1 O1 HO1 180.0 180.0
C1 C2 O2 HO2 180.0 60.0
O2 C2 C1 C3 121.7 119.9
O2 C2 C1 H2 239.8 239.9
C3 C2 C1 H2 118.1 119.9
C1 C2 C3 O3 182.7 183.2
C1 C2 C3 C4 302.7 303.1
C1 C2 C3 H3 61.3 63.0
C2 C1 O5 O1 236.9 240.0
C2 C1 O5 H1 116.5 120.0
O5 C1 C2 O2 178.9 177.5
O5 C1 C2 C3 57.2 57.6
O5 C1 C2 H2 299.1 297.7
O1 C1 O5 H1 239.6 240.0
O5 C1 O1 HO1 57.5 60.1
C4 C5 O5 C1 61.2 61.2
C1 O5 C5 C6 184.4 181.1
C1 O5 C5 H5 303.0 301.2
C2 C1 O1 O5 122.5 120.0
C2 C1 O1 H1 242.8 240.0
O1 C1 C2 O2 54.7 57.5
O1 C1 C2 C3 293.0 297.6
O1 C1 C2 H2 174.9 177.6
O5 C1 O1 H1 120.3 120.0
O1 C1 O5 C5 63.2 58.8
C2 C1 H1 O5 241.9 240.0
C2 C1 H1 O1 119.3 120.0
H1 C1 C2 O2 296.4 297.5
H1 C1 C2 C3 174.7 177.6
H1 C1 C2 H2 56.7 57.6
O5 C1 H1 O1 237.4 239.9
H1 C1 O5 C5 183.6 178.8
H1 C1 O1 HO1 297.2 300.0
O2 C2 C1 O5 178.9 177.5
O2 C2 C1 O1 54.7 57.5
O2 C2 C1 H1 296.4 297.5
C1 C2 O2 C3 238.4 240.3
C1 C2 O2 H2 119.3 120.1
C3 C2 O2 H2 240.9 239.8
O2 C2 C3 O3 60.5 63.2
O2 C2 C3 C4 180.4 183.1
O2 C2 C3 H3 299.1 303.1
HO2 O2 C2 C3 301.6 179.7
HO2 O2 C2 H2 60.7 299.9
C3 C2 C1 O5 57.2 57.6
C3 C2 C1 O1 293.0 297.6
C3 C2 C1 H1 174.7 177.6
C1 C2 C3 O2 122.2 120.0
C1 C2 C3 H2 242.1 240.1
C3 C2 O2 HO2 301.6 179.7
O2 C2 C3 H2 119.9 120.1
O3 C3 C2 C4 240.0 240.1
O3 C3 C2 H3 121.4 120.1
C2 C3 O3 HO3 180.0 300.1
C4 C3 C2 H3 241.4 240.0
C2 C3 C4 O4 178.4 176.8
C2 C3 C4 C5 58.2 57.0
C2 C3 C4 H4 299.2 296.9
H2 C2 C1 O5 299.1 297.7
H2 C2 C1 O1 174.9 177.6
H2 C2 C1 H1 56.7 57.6
C1 C2 H2 O2 239.0 239.8
C1 C2 H2 C3 118.9 119.7
H2 C2 O2 HO2 60.7 299.9
O2 C2 H2 C3 239.9 239.8
H2 C2 C3 O3 300.6 303.0
H2 C2 C3 C4 60.6 63.0
H2 C2 C3 H3 179.2 182.9
O3 C3 C2 H2 300.6 303.0
C2 C3 O3 C4 119.3 119.6
C2 C3 O3 H3 239.5 239.9
C4 C3 O3 H3 120.2 120.3
O3 C3 C4 O4 298.7 296.8
O3 C3 C4 C5 178.6 176.9
O3 C3 C4 H4 59.5 56.8
C4 C3 C2 H2 60.6 63.0
C2 C3 C4 O3 239.6 240.1
C2 C3 C4 H3 118.6 119.9
O3 C3 C4 H3 239.0 239.8
C4 C3 O3 HO3 60.7 180.5
O4 C4 C3 C5 120.2 119.9
O4 C4 C3 H4 239.2 239.9
C3 C4 O4 HO4 180.0 180.0
C5 C4 C3 H4 119.0 120.1
C3 C4 C5 O5 301.1 302.3
C3 C4 C5 C6 178.7 182.4
C3 C4 C5 H5 60.0 62.4
H3 C3 C2 H2 179.2 182.9
C2 C3 H3 O3 121.2 120.2
C2 C3 H3 C4 241.7 240.4
O3 C3 H3 C4 120.5 120.2
H3 C3 O3 HO3 300.5 60.2
H3 C3 C4 O4 59.7 56.9
H3 C3 C4 C5 299.6 297.1
H3 C3 C4 H4 180.5 177.0
HO3 O3 C3 C4 60.7 180.5
HO3 O3 C3 H3 300.5 60.2
O4 C4 C3 H3 59.7 56.9
C3 C4 O4 C5 240.5 240.4
C3 C4 O4 H4 120.0 120.1
C5 C4 O4 H4 239.5 239.7
O4 C4 C5 O5 181.6 182.5
O4 C4 C5 C6 59.2 62.6
O4 C4 C5 H5 300.4 302.5
C1 O5 C5 C4 61.2 61.2
C5 C4 C3 H3 299.6 297.1
C3 C4 C5 O4 119.6 119.8
C3 C4 C5 H4 240.9 240.1
O4 C4 C5 H4 121.3 120.2
C5 C4 O4 HO4 299.6 299.6
O5 C5 C4 C6 122.4 119.9
O5 C5 C4 H5 241.1 240.0
C6 C5 C4 H5 118.7 120.1
C4 C5 C6 H61 180.0 60.0
C4 C5 C6 H62 300.0 180.0
C4 C5 C6 H63 60.0 300.0
H4 C4 C3 H3 180.5 177.0
C3 C4 H4 O4 240.1 239.9
C3 C4 H4 C5 119.0 119.7
O4 C4 H4 C5 238.9 239.8
H4 C4 O4 HO4 60.0 59.9
H4 C4 C5 O5 60.2 62.3
H4 C4 C5 C6 297.8 302.4
H4 C4 C5 H5 179.1 182.3
HO4 O4 C4 C5 299.6 299.6
HO4 O4 C4 H4 60.0 59.9
C5 O5 C1 O1 63.2 58.8
C5 O5 C1 H1 183.6 178.8
O5 C5 C4 H4 60.2 62.3
C4 C5 O5 C6 236.8 240.1
C4 C5 O5 H5 118.1 120.0
C6 C5 O5 H5 241.4 239.9
O5 C5 C6 H61 58.1 300.1
O5 C5 C6 H62 178.1 60.1
O5 C5 C6 H63 298.1 180.1
C6 C5 C4 H4 297.8 302.4
C4 C5 C6 O5 121.9 119.9
C4 C5 C6 H5 241.2 239.9
O5 C5 C6 H5 119.4 120.1
H61 C6 C5 H62 240.0 240.0
H61 C6 C5 H63 120.0 120.0
H62 C6 C5 H63 240.0 240.0
H5 C5 C4 H4 179.1 182.3
C4 C5 H5 O5 241.1 240.0
C4 C5 H5 C6 121.0 120.0
O5 C5 H5 C6 240.0 240.0
H5 C5 C6 H61 298.7 180.0
H5 C5 C6 H62 58.7 300.1
H5 C5 C6 H63 178.7 60.1
H61 C6 C5 H5 298.7 180.0
C5 C6 H61 H62 120.0 120.0
C5 C6 H61 H63 240.0 240.1
H62 C6 H61 H63 120.0 120.1
H62 C6 C5 H5 58.7 300.1
C5 C6 H62 H61 240.0 240.0
C5 C6 H62 H63 120.0 120.0
H61 C6 H62 H63 240.0 240.0
H63 C6 C5 H5 178.7 60.1
C5 C6 H63 H61 120.0 120.0
C5 C6 H63 H62 240.0 240.0
H61 C6 H63 H62 120.0 120.1
HO1 O1 C1 H1 297.2 300.0