PDB Chemical Component G6D
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for G6D
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C1 |
C2 |
1.538 |
1.531 |
C1 |
O5 |
1.416 |
1.429 |
C1 |
O1 |
1.403 |
1.429 |
C1 |
H1 |
1.100 |
1.091 |
O2 |
C2 |
1.426 |
1.429 |
O2 |
HO2 |
0.949 |
0.967 |
C2 |
C3 |
1.518 |
1.532 |
C2 |
H2 |
1.100 |
1.090 |
C3 |
O3 |
1.419 |
1.429 |
C3 |
C4 |
1.517 |
1.532 |
C3 |
H3 |
1.100 |
1.090 |
O3 |
HO3 |
0.950 |
0.967 |
C4 |
O4 |
1.420 |
1.429 |
C4 |
C5 |
1.526 |
1.531 |
C4 |
H4 |
1.100 |
1.089 |
O4 |
HO4 |
0.949 |
0.967 |
C5 |
O5 |
1.436 |
1.429 |
C5 |
C6 |
1.531 |
1.530 |
C5 |
H5 |
1.099 |
1.090 |
C6 |
H61 |
1.100 |
1.090 |
C6 |
H62 |
1.100 |
1.089 |
C6 |
H63 |
1.100 |
1.091 |
O1 |
HO1 |
0.950 |
0.967 |
Bond Angles for G6D
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C2 |
C1 |
O5 |
109.4 |
109.5 |
C2 |
C1 |
O1 |
110.4 |
109.4 |
C2 |
C1 |
H1 |
107.1 |
109.5 |
C1 |
C2 |
O2 |
110.9 |
109.6 |
C1 |
C2 |
C3 |
109.7 |
109.2 |
C1 |
C2 |
H2 |
108.1 |
109.5 |
O5 |
C1 |
O1 |
112.4 |
109.5 |
O5 |
C1 |
H1 |
108.6 |
109.5 |
C1 |
O5 |
C5 |
113.7 |
114.1 |
O1 |
C1 |
H1 |
108.8 |
109.5 |
C1 |
O1 |
HO1 |
109.5 |
114.0 |
C2 |
O2 |
HO2 |
109.5 |
114.0 |
O2 |
C2 |
C3 |
110.0 |
109.5 |
O2 |
C2 |
H2 |
109.6 |
109.5 |
C3 |
C2 |
H2 |
108.4 |
109.6 |
C2 |
C3 |
O3 |
110.2 |
109.6 |
C2 |
C3 |
C4 |
108.5 |
109.0 |
C2 |
C3 |
H3 |
109.0 |
109.5 |
O3 |
C3 |
C4 |
109.6 |
109.6 |
O3 |
C3 |
H3 |
110.4 |
109.5 |
C3 |
O3 |
HO3 |
109.5 |
114.0 |
C4 |
C3 |
H3 |
109.1 |
109.6 |
C3 |
C4 |
O4 |
109.1 |
109.5 |
C3 |
C4 |
C5 |
109.0 |
109.2 |
C3 |
C4 |
H4 |
109.2 |
109.5 |
O4 |
C4 |
C5 |
110.0 |
109.5 |
O4 |
C4 |
H4 |
110.5 |
109.5 |
C4 |
O4 |
HO4 |
109.5 |
113.9 |
C5 |
C4 |
H4 |
109.0 |
109.7 |
C4 |
C5 |
O5 |
109.4 |
109.4 |
C4 |
C5 |
C6 |
111.7 |
109.4 |
C4 |
C5 |
H5 |
108.1 |
109.5 |
O5 |
C5 |
C6 |
110.3 |
109.4 |
O5 |
C5 |
H5 |
109.3 |
109.5 |
C6 |
C5 |
H5 |
108.0 |
109.5 |
C5 |
C6 |
H61 |
109.5 |
109.5 |
C5 |
C6 |
H62 |
109.5 |
109.5 |
C5 |
C6 |
H63 |
109.5 |
109.4 |
H61 |
C6 |
H62 |
109.5 |
109.5 |
H61 |
C6 |
H63 |
109.5 |
109.5 |
H62 |
C6 |
H63 |
109.5 |
109.5 |
Torsion Angles for G6D
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
O5 |
C1 |
C2 |
O1 |
124.2 |
120.0 |
O5 |
C1 |
C2 |
H1 |
242.5 |
240.0 |
C2 |
C1 |
O5 |
C5 |
300.1 |
298.8 |
O1 |
C1 |
C2 |
H1 |
118.3 |
120.0 |
C2 |
C1 |
O1 |
HO1 |
180.0 |
180.0 |
C1 |
C2 |
O2 |
HO2 |
180.0 |
60.0 |
O2 |
C2 |
C1 |
C3 |
121.7 |
119.9 |
O2 |
C2 |
C1 |
H2 |
239.8 |
239.9 |
C3 |
C2 |
C1 |
H2 |
118.1 |
119.9 |
C1 |
C2 |
C3 |
O3 |
182.7 |
183.2 |
C1 |
C2 |
C3 |
C4 |
302.7 |
303.1 |
C1 |
C2 |
C3 |
H3 |
61.3 |
63.0 |
C2 |
C1 |
O5 |
O1 |
236.9 |
240.0 |
C2 |
C1 |
O5 |
H1 |
116.5 |
120.0 |
O5 |
C1 |
C2 |
O2 |
178.9 |
177.5 |
O5 |
C1 |
C2 |
C3 |
57.2 |
57.6 |
O5 |
C1 |
C2 |
H2 |
299.1 |
297.7 |
O1 |
C1 |
O5 |
H1 |
239.6 |
240.0 |
O5 |
C1 |
O1 |
HO1 |
57.5 |
60.1 |
C4 |
C5 |
O5 |
C1 |
61.2 |
61.2 |
C1 |
O5 |
C5 |
C6 |
184.4 |
181.1 |
C1 |
O5 |
C5 |
H5 |
303.0 |
301.2 |
C2 |
C1 |
O1 |
O5 |
122.5 |
120.0 |
C2 |
C1 |
O1 |
H1 |
242.8 |
240.0 |
O1 |
C1 |
C2 |
O2 |
54.7 |
57.5 |
O1 |
C1 |
C2 |
C3 |
293.0 |
297.6 |
O1 |
C1 |
C2 |
H2 |
174.9 |
177.6 |
O5 |
C1 |
O1 |
H1 |
120.3 |
120.0 |
O1 |
C1 |
O5 |
C5 |
63.2 |
58.8 |
C2 |
C1 |
H1 |
O5 |
241.9 |
240.0 |
C2 |
C1 |
H1 |
O1 |
119.3 |
120.0 |
H1 |
C1 |
C2 |
O2 |
296.4 |
297.5 |
H1 |
C1 |
C2 |
C3 |
174.7 |
177.6 |
H1 |
C1 |
C2 |
H2 |
56.7 |
57.6 |
O5 |
C1 |
H1 |
O1 |
237.4 |
239.9 |
H1 |
C1 |
O5 |
C5 |
183.6 |
178.8 |
H1 |
C1 |
O1 |
HO1 |
297.2 |
300.0 |
O2 |
C2 |
C1 |
O5 |
178.9 |
177.5 |
O2 |
C2 |
C1 |
O1 |
54.7 |
57.5 |
O2 |
C2 |
C1 |
H1 |
296.4 |
297.5 |
C1 |
C2 |
O2 |
C3 |
238.4 |
240.3 |
C1 |
C2 |
O2 |
H2 |
119.3 |
120.1 |
C3 |
C2 |
O2 |
H2 |
240.9 |
239.8 |
O2 |
C2 |
C3 |
O3 |
60.5 |
63.2 |
O2 |
C2 |
C3 |
C4 |
180.4 |
183.1 |
O2 |
C2 |
C3 |
H3 |
299.1 |
303.1 |
HO2 |
O2 |
C2 |
C3 |
301.6 |
179.7 |
HO2 |
O2 |
C2 |
H2 |
60.7 |
299.9 |
C3 |
C2 |
C1 |
O5 |
57.2 |
57.6 |
C3 |
C2 |
C1 |
O1 |
293.0 |
297.6 |
C3 |
C2 |
C1 |
H1 |
174.7 |
177.6 |
C1 |
C2 |
C3 |
O2 |
122.2 |
120.0 |
C1 |
C2 |
C3 |
H2 |
242.1 |
240.1 |
C3 |
C2 |
O2 |
HO2 |
301.6 |
179.7 |
O2 |
C2 |
C3 |
H2 |
119.9 |
120.1 |
O3 |
C3 |
C2 |
C4 |
240.0 |
240.1 |
O3 |
C3 |
C2 |
H3 |
121.4 |
120.1 |
C2 |
C3 |
O3 |
HO3 |
180.0 |
300.1 |
C4 |
C3 |
C2 |
H3 |
241.4 |
240.0 |
C2 |
C3 |
C4 |
O4 |
178.4 |
176.8 |
C2 |
C3 |
C4 |
C5 |
58.2 |
57.0 |
C2 |
C3 |
C4 |
H4 |
299.2 |
296.9 |
H2 |
C2 |
C1 |
O5 |
299.1 |
297.7 |
H2 |
C2 |
C1 |
O1 |
174.9 |
177.6 |
H2 |
C2 |
C1 |
H1 |
56.7 |
57.6 |
C1 |
C2 |
H2 |
O2 |
239.0 |
239.8 |
C1 |
C2 |
H2 |
C3 |
118.9 |
119.7 |
H2 |
C2 |
O2 |
HO2 |
60.7 |
299.9 |
O2 |
C2 |
H2 |
C3 |
239.9 |
239.8 |
H2 |
C2 |
C3 |
O3 |
300.6 |
303.0 |
H2 |
C2 |
C3 |
C4 |
60.6 |
63.0 |
H2 |
C2 |
C3 |
H3 |
179.2 |
182.9 |
O3 |
C3 |
C2 |
H2 |
300.6 |
303.0 |
C2 |
C3 |
O3 |
C4 |
119.3 |
119.6 |
C2 |
C3 |
O3 |
H3 |
239.5 |
239.9 |
C4 |
C3 |
O3 |
H3 |
120.2 |
120.3 |
O3 |
C3 |
C4 |
O4 |
298.7 |
296.8 |
O3 |
C3 |
C4 |
C5 |
178.6 |
176.9 |
O3 |
C3 |
C4 |
H4 |
59.5 |
56.8 |
C4 |
C3 |
C2 |
H2 |
60.6 |
63.0 |
C2 |
C3 |
C4 |
O3 |
239.6 |
240.1 |
C2 |
C3 |
C4 |
H3 |
118.6 |
119.9 |
O3 |
C3 |
C4 |
H3 |
239.0 |
239.8 |
C4 |
C3 |
O3 |
HO3 |
60.7 |
180.5 |
O4 |
C4 |
C3 |
C5 |
120.2 |
119.9 |
O4 |
C4 |
C3 |
H4 |
239.2 |
239.9 |
C3 |
C4 |
O4 |
HO4 |
180.0 |
180.0 |
C5 |
C4 |
C3 |
H4 |
119.0 |
120.1 |
C3 |
C4 |
C5 |
O5 |
301.1 |
302.3 |
C3 |
C4 |
C5 |
C6 |
178.7 |
182.4 |
C3 |
C4 |
C5 |
H5 |
60.0 |
62.4 |
H3 |
C3 |
C2 |
H2 |
179.2 |
182.9 |
C2 |
C3 |
H3 |
O3 |
121.2 |
120.2 |
C2 |
C3 |
H3 |
C4 |
241.7 |
240.4 |
O3 |
C3 |
H3 |
C4 |
120.5 |
120.2 |
H3 |
C3 |
O3 |
HO3 |
300.5 |
60.2 |
H3 |
C3 |
C4 |
O4 |
59.7 |
56.9 |
H3 |
C3 |
C4 |
C5 |
299.6 |
297.1 |
H3 |
C3 |
C4 |
H4 |
180.5 |
177.0 |
HO3 |
O3 |
C3 |
C4 |
60.7 |
180.5 |
HO3 |
O3 |
C3 |
H3 |
300.5 |
60.2 |
O4 |
C4 |
C3 |
H3 |
59.7 |
56.9 |
C3 |
C4 |
O4 |
C5 |
240.5 |
240.4 |
C3 |
C4 |
O4 |
H4 |
120.0 |
120.1 |
C5 |
C4 |
O4 |
H4 |
239.5 |
239.7 |
O4 |
C4 |
C5 |
O5 |
181.6 |
182.5 |
O4 |
C4 |
C5 |
C6 |
59.2 |
62.6 |
O4 |
C4 |
C5 |
H5 |
300.4 |
302.5 |
C1 |
O5 |
C5 |
C4 |
61.2 |
61.2 |
C5 |
C4 |
C3 |
H3 |
299.6 |
297.1 |
C3 |
C4 |
C5 |
O4 |
119.6 |
119.8 |
C3 |
C4 |
C5 |
H4 |
240.9 |
240.1 |
O4 |
C4 |
C5 |
H4 |
121.3 |
120.2 |
C5 |
C4 |
O4 |
HO4 |
299.6 |
299.6 |
O5 |
C5 |
C4 |
C6 |
122.4 |
119.9 |
O5 |
C5 |
C4 |
H5 |
241.1 |
240.0 |
C6 |
C5 |
C4 |
H5 |
118.7 |
120.1 |
C4 |
C5 |
C6 |
H61 |
180.0 |
60.0 |
C4 |
C5 |
C6 |
H62 |
300.0 |
180.0 |
C4 |
C5 |
C6 |
H63 |
60.0 |
300.0 |
H4 |
C4 |
C3 |
H3 |
180.5 |
177.0 |
C3 |
C4 |
H4 |
O4 |
240.1 |
239.9 |
C3 |
C4 |
H4 |
C5 |
119.0 |
119.7 |
O4 |
C4 |
H4 |
C5 |
238.9 |
239.8 |
H4 |
C4 |
O4 |
HO4 |
60.0 |
59.9 |
H4 |
C4 |
C5 |
O5 |
60.2 |
62.3 |
H4 |
C4 |
C5 |
C6 |
297.8 |
302.4 |
H4 |
C4 |
C5 |
H5 |
179.1 |
182.3 |
HO4 |
O4 |
C4 |
C5 |
299.6 |
299.6 |
HO4 |
O4 |
C4 |
H4 |
60.0 |
59.9 |
C5 |
O5 |
C1 |
O1 |
63.2 |
58.8 |
C5 |
O5 |
C1 |
H1 |
183.6 |
178.8 |
O5 |
C5 |
C4 |
H4 |
60.2 |
62.3 |
C4 |
C5 |
O5 |
C6 |
236.8 |
240.1 |
C4 |
C5 |
O5 |
H5 |
118.1 |
120.0 |
C6 |
C5 |
O5 |
H5 |
241.4 |
239.9 |
O5 |
C5 |
C6 |
H61 |
58.1 |
300.1 |
O5 |
C5 |
C6 |
H62 |
178.1 |
60.1 |
O5 |
C5 |
C6 |
H63 |
298.1 |
180.1 |
C6 |
C5 |
C4 |
H4 |
297.8 |
302.4 |
C4 |
C5 |
C6 |
O5 |
121.9 |
119.9 |
C4 |
C5 |
C6 |
H5 |
241.2 |
239.9 |
O5 |
C5 |
C6 |
H5 |
119.4 |
120.1 |
H61 |
C6 |
C5 |
H62 |
240.0 |
240.0 |
H61 |
C6 |
C5 |
H63 |
120.0 |
120.0 |
H62 |
C6 |
C5 |
H63 |
240.0 |
240.0 |
H5 |
C5 |
C4 |
H4 |
179.1 |
182.3 |
C4 |
C5 |
H5 |
O5 |
241.1 |
240.0 |
C4 |
C5 |
H5 |
C6 |
121.0 |
120.0 |
O5 |
C5 |
H5 |
C6 |
240.0 |
240.0 |
H5 |
C5 |
C6 |
H61 |
298.7 |
180.0 |
H5 |
C5 |
C6 |
H62 |
58.7 |
300.1 |
H5 |
C5 |
C6 |
H63 |
178.7 |
60.1 |
H61 |
C6 |
C5 |
H5 |
298.7 |
180.0 |
C5 |
C6 |
H61 |
H62 |
120.0 |
120.0 |
C5 |
C6 |
H61 |
H63 |
240.0 |
240.1 |
H62 |
C6 |
H61 |
H63 |
120.0 |
120.1 |
H62 |
C6 |
C5 |
H5 |
58.7 |
300.1 |
C5 |
C6 |
H62 |
H61 |
240.0 |
240.0 |
C5 |
C6 |
H62 |
H63 |
120.0 |
120.0 |
H61 |
C6 |
H62 |
H63 |
240.0 |
240.0 |
H63 |
C6 |
C5 |
H5 |
178.7 |
60.1 |
C5 |
C6 |
H63 |
H61 |
120.0 |
120.0 |
C5 |
C6 |
H63 |
H62 |
240.0 |
240.0 |
H61 |
C6 |
H63 |
H62 |
120.0 |
120.1 |
HO1 |
O1 |
C1 |
H1 |
297.2 |
300.0 |