Atom Nomenclature for G67

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for G67

Atom Name (V3) Atom Name (V2)
O2 O1
C21 C1
N5 N1
C26 C2
C25 C3
C24 C4
C27 C5
C32 C6
C31 C7
C30 C8
C33 C9
N8 N2
N7 N3
C35 C10
C34 C11
N6 N4
C29 C12
C28 C13
C23 C14
C22 C15
C20 C16
N4 N5
C18 C17
C17 C18
C19 C19
C16 C20
S S1
C36 C21
C15 C22
O1 O2
N3 N6
C11 C23
C10 C24
C12 C25
C13 C26
C14 C27
C9 C28
N1 N7
N2 N8
C8 C29
C6 C30
C5 C31
C4 C32
C7 C33
N N9
C3 C34
O O3
C1 C35
C2 C36
C C37
H29 H1
H30 H2
H28 H3
H34 H4
H33 H5
H36 H6
H37 H7
H38 H8
H35 H9
H32 H10
H31 H11
H27 H12
H26 H13
H25 H14
H24 H15
H23 H16
H22 H17
H19 H19
H18 H20
H17 H21
H16 H22
H21 H23
H20 H24
H41 H25
H39 H26
H40 H27
H15 H28
H12 H29
H13 H30
H14 H31
H H32
H10 H33
H9 H34
H11 H35
H5 H36
H8 H37
H7 H38
H6 H39
H3 H40
H2 H41
H4 H42