Atom Nomenclature for G65

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for G65

Atom Name (V3) Atom Name (V2)
CBE C1
CBF C2
NBG N1
CBJ C3
CBH C4
CBI C5
NBD N2
CBC C6
CAZ C7
CBA C8
CBB C9
CAY C10
CAX C11
CAV C12
CAU C13
OAW O1
NAT N3
CAO C14
CAN C15
CAP C16
CAQ C17
CAR C18
CAS C19
CAM C20
NAL N4
CAJ C21
NAK N5
SAI S1
CAH C22
CAG C23
CAF C24
CAA C25
CAB C26
CAC C27
NAD N6
CAE C28
H1 H1
H2 H2
H3 H3
H4 H4
H6 H6
H7 H7
H8 H8
H9 H9
H10 H10
H11 H11
H12 H12
H14 H14
H15 H15
H16 H16
H17 H17
H18 H18
H19 H19
H20 H20
H21 H21
H22 H22
H23 H23
H24 H24
H25 H25
H26 H26
H27 H27
H28 H28
H29 H29
H30 H30
H31 H31
H32 H32