Atom Nomenclature for G64

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for G64

Atom Name (V3) Atom Name (V2)
C2 C1
O39 O1
C40 C2
C3 C3
C4 C4
C5 C5
C6 C6
C7 C7
S8 S1
O9 O2
O10 O3
N11 N1
C12 C8
C13 C9
C14 C10
C15 C11
C16 C12
C17 C13
O18 O4
C19 C14
N20 N2
C21 C15
O22 O5
C32 C16
C33 C17
C34 C18
C35 C19
C36 C20
C37 C21
C38 C22
C51 C23
C52 C24
C53 C25
C54 C26
C55 C27
C56 C28
C57 C29
C58 C30
O59 O6
N60 N3
C61 C31
C62 C32
C63 C33
N64 N4
C65 C34
O66 O7
C67 C35
C68 C36
C69 C37
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H7 H7
H8 H8
H9 H9
H10 H10
H11 H11
H12 H12
H13 H13
H14 H14
H15 H15
H16 H16
H17 H17
H18 H18
H19 H19
H20 H20
H21 H21
H22 H22
H23 H23
H24 H24
H25 H25
H26 H26
H27 H27
H28 H28
H29 H29
H30 H30
H31 H31
H32 H32
H33 H33
H34 H34
H35 H35
H36 H36
H37 H37
H38 H38
H39 H39
H40 H40
H41 H41
H42 H42
H43 H43
H44 H44
H45 H45
H46 H46