PDB Chemical Component G54
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for G54
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C10 |
C9 |
1.532 |
1.529 |
| C8 |
C9 |
1.574 |
1.543 |
| C8 |
C7 |
1.547 |
1.542 |
| C9 |
N4 |
1.492 |
1.465 |
| C9 |
C5 |
1.521 |
1.515 |
| N4 |
C17 |
1.365 |
1.355 |
| C17 |
N5 |
1.160 |
1.136 |
| C7 |
C4 |
1.510 |
1.514 |
| C5 |
C6 |
1.395 |
1.382 |
| C5 |
C4 |
1.390 |
1.384 |
| C6 |
C1 |
1.397 |
1.393 |
| C4 |
C3 |
1.394 |
1.386 |
| C3 |
C2 |
1.384 |
1.378 |
| C1 |
C2 |
1.393 |
1.394 |
| C1 |
C11 |
1.488 |
1.481 |
| C16 |
C15 |
1.357 |
1.344 |
| C16 |
C14 |
1.432 |
1.461 |
| C15 |
N3 |
1.368 |
1.370 |
| C14 |
C11 |
1.398 |
1.404 |
| C14 |
C13 |
1.448 |
1.411 |
| C11 |
N1 |
1.344 |
1.332 |
| N3 |
C13 |
1.361 |
1.368 |
| N1 |
C12 |
1.338 |
1.320 |
| C13 |
N2 |
1.351 |
1.329 |
| C12 |
N2 |
1.334 |
1.316 |
| N3 |
H1 |
1.001 |
0.971 |
| C7 |
H2 |
1.100 |
1.090 |
| C7 |
H3 |
1.100 |
1.090 |
| C6 |
H4 |
1.080 |
1.080 |
| C8 |
H5 |
1.100 |
1.090 |
| C8 |
H6 |
1.100 |
1.091 |
| C16 |
H7 |
1.080 |
1.080 |
| C2 |
H8 |
1.079 |
1.080 |
| C3 |
H9 |
1.080 |
1.081 |
| C10 |
H10 |
1.100 |
1.090 |
| C10 |
H11 |
1.100 |
1.091 |
| C10 |
H12 |
1.100 |
1.090 |
| C12 |
H13 |
1.080 |
1.079 |
| C15 |
H14 |
1.080 |
1.080 |
| N4 |
H15 |
1.000 |
0.970 |
Bond Angles for G54
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C10 |
C9 |
N4 |
112.9 |
110.2 |
| C8 |
C9 |
N4 |
108.2 |
110.3 |
| C8 |
C9 |
C5 |
102.2 |
105.2 |
| C8 |
C7 |
H2 |
110.8 |
110.3 |
| C8 |
C7 |
H3 |
110.8 |
110.4 |
| C5 |
C9 |
N4 |
110.8 |
110.3 |
| C9 |
N4 |
C17 |
122.2 |
120.0 |
| C9 |
N4 |
H15 |
118.9 |
120.0 |
| C17 |
N4 |
H15 |
118.9 |
120.0 |
| C7 |
C4 |
C3 |
129.5 |
130.3 |
| C5 |
C6 |
H4 |
119.1 |
120.0 |
| C6 |
C1 |
C2 |
118.0 |
119.6 |
| C6 |
C1 |
C11 |
120.4 |
120.2 |
| C1 |
C6 |
H4 |
119.1 |
119.9 |
| C4 |
C3 |
C2 |
120.5 |
120.4 |
| C4 |
C3 |
H9 |
119.7 |
119.8 |
| C3 |
C2 |
H8 |
119.6 |
120.1 |
| C2 |
C1 |
C11 |
121.6 |
120.2 |
| C1 |
C2 |
H8 |
119.5 |
120.1 |
| C1 |
C11 |
N1 |
116.7 |
120.9 |
| C14 |
C16 |
C15 |
107.6 |
106.9 |
| C15 |
C16 |
H7 |
126.2 |
126.6 |
| C16 |
C15 |
H14 |
124.9 |
125.1 |
| C16 |
C14 |
C11 |
140.6 |
135.2 |
| C14 |
C16 |
H7 |
126.2 |
126.6 |
| C15 |
N3 |
H1 |
125.3 |
125.0 |
| C11 |
N1 |
C12 |
118.3 |
121.1 |
| N3 |
C13 |
N2 |
127.0 |
134.4 |
| C13 |
N3 |
H1 |
125.2 |
125.0 |
| N1 |
C12 |
H13 |
115.7 |
118.6 |
| H2 |
C7 |
H3 |
109.5 |
110.3 |
| H5 |
C8 |
H6 |
109.4 |
110.8 |
| H10 |
C10 |
H11 |
109.5 |
109.4 |
| H10 |
C10 |
H12 |
109.5 |
109.4 |
| H11 |
C10 |
H12 |
109.4 |
109.4 |
Torsion Angles for G54
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C8 |
C9 |
C10 |
N4 |
238.3 |
237.9 |
| C5 |
C9 |
C10 |
N4 |
125.3 |
122.0 |
| C10 |
C9 |
N4 |
C17 |
59.6 |
60.6 |
| C10 |
C9 |
N4 |
H15 |
239.6 |
240.5 |
| C10 |
C9 |
C8 |
N4 |
124.3 |
122.1 |
| C9 |
C8 |
C7 |
H2 |
140.4 |
214.7 |
| C9 |
C8 |
C7 |
H3 |
262.1 |
92.5 |
| C5 |
C9 |
C8 |
N4 |
243.1 |
241.1 |
| C8 |
C9 |
N4 |
C17 |
182.8 |
182.8 |
| C8 |
C9 |
N4 |
H15 |
2.8 |
2.7 |
| C8 |
C7 |
C4 |
C3 |
164.1 |
197.2 |
| H2 |
C7 |
C8 |
H3 |
238.3 |
122.1 |
| C8 |
C9 |
N4 |
C5 |
248.8 |
244.2 |
| C17 |
N4 |
C9 |
H15 |
180.0 |
180.1 |
| C10 |
C9 |
C5 |
N4 |
233.6 |
238.0 |
| C8 |
C9 |
C5 |
N4 |
115.1 |
118.9 |
| C5 |
C9 |
N4 |
C17 |
294.0 |
298.6 |
| C5 |
C9 |
N4 |
H15 |
114.1 |
118.5 |
| C9 |
C5 |
C6 |
H4 |
357.7 |
1.0 |
| C9 |
N4 |
C17 |
H15 |
180.0 |
179.9 |
| C9 |
N4 |
C17 |
N5 |
353.1 |
302.2 |
| C7 |
C4 |
C3 |
C2 |
182.5 |
180.0 |
| C7 |
C4 |
C3 |
H9 |
2.5 |
360.0 |
| C5 |
C6 |
C1 |
C11 |
179.4 |
180.9 |
| C1 |
C6 |
C5 |
H4 |
180.0 |
179.0 |
| C5 |
C4 |
C3 |
H9 |
179.9 |
179.7 |
| C5 |
C6 |
C1 |
H4 |
180.0 |
181.0 |
| C2 |
C1 |
C6 |
C11 |
180.6 |
180.0 |
| C6 |
C1 |
C2 |
H8 |
180.1 |
180.0 |
| C6 |
C1 |
C11 |
N1 |
147.3 |
325.0 |
| C4 |
C3 |
C2 |
H8 |
179.9 |
179.7 |
| C4 |
C3 |
C2 |
H9 |
180.0 |
180.0 |
| C3 |
C2 |
C1 |
C11 |
180.7 |
179.0 |
| C1 |
C2 |
C3 |
H8 |
180.0 |
181.0 |
| C6 |
C1 |
C2 |
C11 |
179.4 |
180.0 |
| C2 |
C1 |
C6 |
H4 |
180.0 |
179.9 |
| C4 |
C3 |
C2 |
C1 |
359.9 |
0.7 |
| C3 |
C2 |
C1 |
H8 |
180.0 |
179.0 |
| C2 |
C1 |
C11 |
N1 |
326.7 |
145.0 |
| C6 |
C1 |
C11 |
C2 |
180.6 |
180.0 |
| C11 |
C1 |
C6 |
H4 |
359.4 |
359.9 |
| C11 |
C1 |
C2 |
H8 |
0.7 |
0.0 |
| C16 |
C14 |
C11 |
C1 |
357.6 |
0.0 |
| C1 |
C11 |
N1 |
C12 |
183.9 |
179.9 |
| C15 |
C16 |
C14 |
C11 |
176.1 |
180.0 |
| C14 |
C16 |
C15 |
H7 |
180.0 |
180.3 |
| C16 |
C15 |
N3 |
H1 |
180.1 |
179.8 |
| C15 |
C16 |
C14 |
H7 |
180.0 |
179.7 |
| C14 |
C16 |
C15 |
H14 |
180.4 |
180.0 |
| C13 |
N3 |
C15 |
H1 |
180.0 |
179.8 |
| C11 |
C14 |
C16 |
C15 |
176.1 |
180.0 |
| C11 |
C14 |
C16 |
H7 |
356.1 |
0.4 |
| C14 |
C13 |
N3 |
H1 |
179.6 |
180.0 |
| C16 |
C14 |
C11 |
N1 |
181.3 |
180.0 |
| C11 |
N1 |
C12 |
H13 |
181.4 |
180.1 |
| C15 |
N3 |
C13 |
H1 |
180.0 |
180.2 |
| N2 |
C13 |
N3 |
H1 |
359.6 |
0.0 |
| H1 |
N3 |
C13 |
N2 |
359.6 |
0.0 |
| C8 |
C7 |
H2 |
H3 |
122.5 |
237.8 |
| H2 |
C7 |
C4 |
C3 |
44.9 |
316.2 |
| C8 |
C7 |
H3 |
H2 |
237.5 |
122.2 |
| H3 |
C7 |
C4 |
C3 |
283.2 |
78.2 |
| H4 |
C6 |
C1 |
C2 |
180.0 |
179.9 |
| H4 |
C6 |
C1 |
C11 |
359.4 |
359.9 |
| H5 |
C8 |
C9 |
N4 |
215.4 |
27.1 |
| H5 |
C8 |
C9 |
C5 |
98.5 |
268.2 |
| H5 |
C8 |
C7 |
H2 |
20.9 |
332.8 |
| H5 |
C8 |
C7 |
H3 |
142.7 |
210.7 |
| H6 |
C8 |
C9 |
N4 |
336.4 |
263.6 |
| H6 |
C8 |
C9 |
C5 |
219.5 |
144.7 |
| H6 |
C8 |
C7 |
H2 |
259.9 |
96.3 |
| H6 |
C8 |
C7 |
H3 |
21.6 |
334.2 |
| C14 |
C16 |
H7 |
C15 |
180.0 |
179.6 |
| H7 |
C16 |
C15 |
H14 |
0.4 |
359.7 |
| H7 |
C16 |
C14 |
C11 |
356.1 |
0.4 |
| H8 |
C2 |
C1 |
C11 |
0.7 |
0.0 |
| C4 |
C3 |
H9 |
C2 |
180.0 |
180.0 |
| H9 |
C3 |
C2 |
H8 |
359.9 |
359.7 |
| H10 |
C10 |
C9 |
N4 |
301.7 |
60.7 |
| H11 |
C10 |
H10 |
H12 |
120.0 |
119.9 |
| H11 |
C10 |
C9 |
N4 |
61.7 |
180.7 |
| H10 |
C10 |
H11 |
H12 |
240.0 |
240.1 |
| H12 |
C10 |
C9 |
N4 |
181.6 |
300.7 |
| H10 |
C10 |
H12 |
H11 |
120.0 |
119.9 |
| H14 |
C15 |
C16 |
H7 |
0.4 |
359.7 |
| H14 |
C15 |
N3 |
H1 |
0.0 |
0.2 |
| C9 |
N4 |
H15 |
C17 |
180.0 |
180.1 |