PDB Chemical Component G52

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for G52

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C3 C2 1.393 1.387
O39 C2 1.365 1.359
C2 C7 1.396 1.387
C3 C4 1.390 1.381
C3 H3 1.080 1.080
C4 C5 1.393 1.383
C4 H4 1.080 1.079
C5 C6 1.381 1.383
C5 S8 1.760 1.762
C7 C6 1.393 1.381
C6 H6 1.080 1.080
C7 H7 1.080 1.080
O9 S8 1.493 1.421
S8 O10 1.483 1.421
S8 N11 1.648 1.657
N11 C16 1.460 1.466
N11 C12 1.454 1.464
C12 C13 1.526 1.530
C12 H12 1.100 1.089
C12 H12A 1.100 1.090
C14 C13 1.526 1.529
C13 C15 1.542 1.530
C13 H13 1.100 1.090
C14 H14 1.100 1.090
C14 H14A 1.100 1.090
C14 H14B 1.100 1.090
C15 H15 1.100 1.090
C15 H15A 1.100 1.090
C15 H15B 1.100 1.091
C16 C17 1.521 1.530
C16 H16 1.100 1.090
C16 H16A 1.100 1.090
C19 C17 1.526 1.530
C17 O18 1.429 1.429
C17 H17 1.100 1.090
O18 HO18 0.950 0.966
C32 C19 1.516 1.530
C19 N20 1.458 1.465
C19 H19 1.100 1.090
N20 C21 1.330 1.348
N20 HN20 1.000 0.971
O22 C21 1.245 1.216
C21 O23 1.360 1.346
O23 C24 1.424 1.452
C31 C24 1.545 1.544
C24 C25 1.520 1.544
C24 H24 1.100 1.089
O26 C25 1.435 1.444
C25 H25 1.100 1.090
C25 H25A 1.100 1.090
C27 O26 1.406 1.443
C31 C27 1.518 1.555
O28 C27 1.440 1.439
C27 H27 1.100 1.090
C29 O28 1.403 1.443
O41 C29 1.453 1.434
C30 C29 1.528 1.553
C29 H29 1.100 1.090
C43 C30 1.523 1.549
C30 C31 1.517 1.554
C30 H30 1.100 1.090
C31 H31 1.100 1.091
C38 C32 1.542 1.506
C32 H32 1.100 1.090
C32 H32A 1.100 1.090
C34 C33 1.398 1.382
C33 C38 1.387 1.382
C33 H33 1.080 1.080
C35 C34 1.393 1.382
C34 H34 1.080 1.080
C35 C36 1.388 1.382
C35 H35 1.079 1.080
C36 C37 1.395 1.382
C36 H36 1.080 1.081
C37 C38 1.378 1.382
C37 H37 1.080 1.080
O39 C40 1.410 1.429
C40 H40 1.100 1.090
C40 H40A 1.100 1.091
C40 H40B 1.100 1.090
C42 O41 1.453 1.436
C43 C42 1.532 1.579
C42 H42 1.100 1.089
C42 H42A 1.100 1.091
C43 H43 1.100 1.090
C43 H43A 1.100 1.091

Bond Angles for G52

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C3 C2 C7 119.3 119.9
C2 C7 C6 118.1 120.0
C2 C7 H7 120.9 120.0
C4 C3 H3 119.4 120.0
C3 C4 C5 119.6 120.0
C3 C4 H4 120.2 120.0
C5 C4 H4 120.2 119.9
C4 C5 C6 118.3 120.1
C4 C5 S8 122.0 119.9
C6 C5 S8 119.6 119.9
C5 C6 H6 118.6 119.9
C5 S8 O10 107.3 106.4
C5 S8 N11 110.5 107.2
C7 C6 H6 118.6 120.0
O9 S8 O10 117.6 123.2
O9 S8 N11 108.6 106.4
O10 S8 N11 106.0 106.4
S8 N11 C16 117.6 120.0
S8 N11 C12 114.0 120.0
C12 N11 C16 115.4 120.0
N11 C16 C17 111.1 109.4
N11 C16 H16 108.9 109.4
N11 C16 H16A 109.0 109.5
N11 C12 C13 115.0 109.5
N11 C12 H12 107.7 109.5
N11 C12 H12A 107.7 109.4
C13 C12 H12 107.7 109.5
C13 C12 H12A 107.7 109.4
C12 C13 C15 108.6 109.5
C12 C13 H13 105.8 109.4
H12 C12 H12A 111.2 109.5
C14 C13 C15 108.4 109.5
C14 C13 H13 106.0 109.5
C15 C13 H13 112.9 109.4
C13 C15 H15 109.5 109.5
C13 C15 H15A 109.5 109.5
C13 C15 H15B 109.5 109.4
H14 C14 H14A 109.5 109.4
H14 C14 H14B 109.4 109.5
H14A C14 H14B 109.5 109.5
H15 C15 H15A 109.5 109.5
H15 C15 H15B 109.5 109.5
H15A C15 H15B 109.4 109.5
C17 C16 H16 109.0 109.5
C17 C16 H16A 108.9 109.5
C16 C17 O18 110.0 109.5
C16 C17 H17 105.8 109.5
H16 C16 H16A 110.0 109.5
C19 C17 H17 104.9 109.5
O18 C17 H17 110.2 109.5
C17 O18 HO18 109.5 114.0
C32 C19 H19 110.0 109.5
N20 C19 H19 111.2 109.5
C19 N20 C21 126.7 120.0
C19 N20 HN20 116.7 120.0
C21 N20 HN20 116.7 120.0
N20 C21 O23 113.2 120.0
O22 C21 O23 125.9 120.0
C21 O23 C24 114.7 117.0
O23 C24 C25 107.2 110.5
O23 C24 H24 108.9 110.4
C31 C24 H24 114.3 110.6
C25 C24 H24 115.9 110.5
C24 C25 H25 110.7 110.4
C24 C25 H25A 110.6 110.4
O26 C25 H25 110.6 110.4
O26 C25 H25A 110.7 110.4
H25 C25 H25A 108.2 110.3
C31 C27 H27 111.7 112.5
O28 C27 H27 111.9 112.4
O41 C29 H29 111.9 111.7
C30 C29 H29 112.4 111.9
C43 C30 H30 109.4 113.6
C31 C30 H30 108.4 112.9
C30 C31 H31 108.1 112.9
C38 C32 H32 109.0 109.5
C38 C32 H32A 109.0 109.4
H32 C32 H32A 109.9 109.5
C34 C33 C38 122.2 120.1
C34 C33 H33 118.9 120.0
C38 C33 H33 118.9 120.0
C33 C38 C37 119.9 119.9
C35 C34 H34 121.2 120.0
C36 C35 H35 120.0 120.0
C35 C36 C37 121.6 120.1
C35 C36 H36 119.2 120.0
C37 C36 H36 119.2 120.0
C36 C37 C38 118.6 120.0
C36 C37 H37 120.7 120.0
C38 C37 H37 120.7 120.0
O39 C40 H40 109.5 109.5
O39 C40 H40A 109.5 109.5
O39 C40 H40B 109.5 109.5
H40 C40 H40A 109.4 109.4
H40 C40 H40B 109.5 109.4
H40A C40 H40B 109.5 109.5
C43 C42 H42 112.1 111.1
C43 C42 H42A 112.2 109.8
H42 C42 H42A 106.6 110.3
H43 C43 H43A 107.6 110.9

Torsion Angles for G52

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C3 C2 C7 C6 351.8 0.0
C3 C2 C7 H7 171.7 180.0
O39 C2 C7 H7 354.5 0.2
C2 C7 C6 H6 184.3 180.0
C4 C3 C2 C7 4.3 360.0
C5 C4 C3 H4 180.0 180.0
C3 C4 C5 C6 352.1 0.0
C3 C4 C5 S8 174.9 179.9
H3 C3 C2 C7 184.3 179.9
H3 C3 C4 C5 183.9 180.1
H3 C3 C4 H4 4.0 0.1
C5 C4 C3 H3 183.9 180.1
C3 C4 C5 H4 180.0 180.0
C6 C5 C4 S8 177.2 180.1
C4 C5 C6 H6 183.8 180.0
C4 C5 S8 O10 154.8 343.1
C4 C5 S8 N11 269.9 96.6
H4 C4 C3 H3 4.0 0.1
C3 C4 H4 C5 180.0 180.0
H4 C4 C5 C6 172.1 180.0
H4 C4 C5 S8 354.9 359.9
C2 C7 C6 C5 4.2 0.0
C6 C5 C4 H4 172.1 180.0
C4 C5 C6 S8 182.8 179.9
C6 C5 S8 O10 337.6 163.0
C6 C5 S8 N11 92.8 276.5
C7 C6 C5 H6 180.0 179.9
S8 C5 C4 H4 354.9 359.9
C4 C5 S8 C6 177.1 180.1
S8 C5 C6 H6 1.1 0.1
O9 S8 C5 O10 233.1 227.0
O9 S8 C5 N11 118.0 113.5
O10 S8 C5 N11 244.9 246.5
C5 S8 N11 C16 83.9 84.1
C5 S8 N11 C12 304.1 264.1
C2 C7 C6 H7 180.0 180.0
C7 C6 C5 S8 181.1 180.1
C5 C6 C7 H6 180.0 180.1
H6 C6 C5 S8 1.1 0.1
C2 C7 H7 C6 180.0 180.0
H7 C7 C6 H6 4.3 0.0
C5 S8 O9 O10 120.5 123.0
C5 S8 O9 N11 240.8 245.9
O10 S8 O9 N11 120.3 122.9
O9 S8 N11 C16 327.2 330.5
O9 S8 N11 C12 187.3 150.5
C5 S8 O10 N11 118.1 114.1
O9 S8 O10 N11 238.3 237.1
O10 S8 N11 C16 199.9 197.6
O10 S8 N11 C12 60.0 17.6
C5 S8 N11 O10 244.0 246.5
O9 S8 N11 O10 127.3 132.9
C12 N11 S8 C16 220.1 180.0
S8 N11 C16 C17 115.5 95.0
S8 N11 C16 H16 235.6 215.0
S8 N11 C16 H16A 355.5 335.0
S8 N11 C12 C13 217.3 114.2
S8 N11 C12 H12 337.2 234.2
S8 N11 C12 H12A 97.3 354.2
S8 N11 C16 C12 220.7 180.0
C16 N11 C12 C13 76.5 294.2
C16 N11 C12 H12 196.5 54.2
C16 N11 C12 H12A 316.5 174.3
C17 C16 N11 H16 240.0 240.0
C17 C16 N11 H16A 120.0 120.0
N11 C16 C17 O18 169.8 65.0
N11 C16 C17 H17 50.7 305.0
H16 C16 N11 H16A 240.0 240.0
S8 N11 C12 C16 140.8 180.0
C12 N11 C16 C17 254.8 275.0
C12 N11 C16 H16 14.9 35.0
C12 N11 C16 H16A 134.8 155.0
C13 C12 N11 H12 240.0 240.0
C13 C12 N11 H12A 120.0 120.0
N11 C12 C13 C15 181.4 296.7
N11 C12 C13 H13 302.9 56.6
H12 C12 N11 H12A 240.0 240.0
C13 C12 N11 C16 76.5 294.2
N11 C12 C13 H12 120.0 120.0
N11 C12 C13 H12A 240.0 240.0
H12 C12 C13 H12A 120.0 120.0
C14 C13 C12 C15 238.2 239.9
C14 C13 C12 H13 116.7 120.0
C15 C13 C12 H13 238.5 240.1
C12 C13 C15 H15 180.0 307.7
C12 C13 C15 H15A 300.0 67.7
C12 C13 C15 H15B 60.0 187.7
H12 C12 N11 C16 196.5 54.2
N11 C12 H12 C13 235.5 240.0
N11 C12 H12 H12A 117.7 120.0
C13 C12 H12 H12A 242.2 240.0
H12 C12 C13 C15 61.4 176.7
H12 C12 C13 H13 182.9 296.6
H12A C12 N11 C16 316.5 174.3
N11 C12 H12A C13 124.5 120.0
N11 C12 H12A H12 242.3 240.0
C13 C12 H12A H12 117.7 120.0
H12A C12 C13 C15 301.4 56.6
H12A C12 C13 H13 62.9 176.6
C14 C13 C12 H12 299.6 56.6
C14 C13 C12 H12A 179.6 296.6
C12 C13 C14 C15 121.9 120.0
C12 C13 C14 H13 243.4 240.0
C15 C13 C14 H13 121.5 120.0
C14 C13 C15 H15 305.9 67.7
C14 C13 C15 H15A 65.9 187.8
C14 C13 C15 H15B 185.9 307.8
C15 C13 C12 H12 61.4 176.7
C15 C13 C12 H12A 301.4 56.6
C12 C13 C15 H13 117.0 119.9
C14 C13 C15 H13 242.9 240.0
H15 C15 C13 H15A 240.0 239.9
H15 C15 C13 H15B 120.0 120.0
H15A C15 C13 H15B 240.1 240.0
H13 C13 C12 H12 182.9 296.6
H13 C13 C12 H12A 62.9 176.6
C12 C13 H13 C15 241.3 240.1
C14 C13 H13 C15 118.5 120.1
H13 C13 C15 H15 63.0 187.7
H13 C13 C15 H15A 183.0 307.8
H13 C13 C15 H15B 303.0 67.8
H14 C14 C13 C15 58.1 300.0
H14 C14 C13 H13 296.6 180.0
H14A C14 H14 H14B 120.0 120.0
H14A C14 C13 C15 178.1 60.0
H14A C14 C13 H13 56.6 300.0
H14 C14 H14A H14B 240.1 240.0
H14B C14 C13 C15 298.1 180.0
H14B C14 C13 H13 176.6 60.0
H14 C14 H14B H14A 120.0 119.9
H15 C15 C13 H13 63.0 187.7
C13 C15 H15 H15A 120.0 120.1
C13 C15 H15 H15B 240.0 240.1
H15A C15 H15 H15B 120.0 120.0
H15A C15 C13 H13 183.0 307.8
C13 C15 H15A H15 240.0 240.0
C13 C15 H15A H15B 120.0 120.0
H15 C15 H15A H15B 240.0 240.0
H15B C15 C13 H13 303.0 67.8
C13 C15 H15B H15 120.0 120.0
C13 C15 H15B H15A 240.1 240.0
H15 C15 H15B H15A 120.0 120.0
N11 C16 C17 H16 120.0 119.9
N11 C16 C17 H16A 240.0 240.0
H16 C16 C17 H16A 120.0 120.1
C19 C17 C16 H17 244.8 240.0
O18 C17 C16 H17 119.1 120.0
C16 C17 O18 HO18 180.0 59.9
N11 C16 H16 C17 238.7 240.1
N11 C16 H16 H16A 119.3 120.0
C17 C16 H16 H16A 240.7 239.9
H16 C16 C17 O18 49.8 305.1
H16 C16 C17 H17 290.7 185.0
N11 C16 H16A C17 121.3 120.0
N11 C16 H16A H16 240.7 240.0
C17 C16 H16A H16 119.3 120.1
H16A C16 C17 O18 289.8 185.0
H16A C16 C17 H17 170.8 65.0
C19 C17 C16 H16 175.6 65.0
C19 C17 C16 H16A 55.6 305.0
C16 C17 C19 H17 115.7 120.0
O18 C17 C19 H17 241.0 240.0
C19 C17 O18 HO18 52.0 299.9
O18 C17 C16 H16 49.8 305.1
O18 C17 C16 H16A 289.8 185.0
C16 C17 O18 H17 243.7 239.9
C19 C17 O18 H17 115.7 120.0
H17 C17 C16 H16 290.7 185.0
H17 C17 C16 H16A 170.8 65.0
C16 C17 H17 O18 118.9 120.1
H17 C17 O18 HO18 296.3 179.9
HO18 O18 C17 H17 296.3 179.9
C32 C19 C17 H17 173.1 175.0
N20 C19 C32 H19 239.2 240.0
C32 C19 N20 HN20 304.6 265.0
N20 C19 C17 H17 53.5 55.0
C32 C19 N20 H19 120.0 120.0
C21 N20 C19 HN20 180.0 180.1
C19 N20 C21 O23 178.4 179.9
H19 C19 C17 H17 292.9 295.0
H19 C19 N20 C21 4.6 325.1
H19 C19 N20 HN20 184.6 145.0
C21 N20 C19 H19 4.6 325.1
C19 N20 C21 HN20 180.0 179.9
O22 C21 N20 O23 181.6 180.0
N20 C21 O23 C24 174.9 180.0
HN20 N20 C19 H19 184.6 145.0
C19 N20 HN20 C21 180.0 180.1
HN20 N20 C21 O23 358.4 0.0
O22 C21 N20 HN20 180.0 180.0
N20 C21 O22 O23 178.2 180.0
O22 C21 O23 C24 353.3 360.0
O23 C21 N20 HN20 358.4 0.0
C21 O23 C24 C25 136.1 91.5
C21 O23 C24 H24 10.0 329.0
C31 C24 O23 H24 234.7 237.3
C25 C24 O23 H24 126.1 122.5
O23 C24 C25 H25 198.9 213.3
O23 C24 C25 H25A 318.9 335.5
O23 C24 C31 H24 122.1 122.6
C25 C24 C31 H24 234.8 241.2
C31 C24 C25 H25 84.9 94.6
C31 C24 C25 H25A 204.8 216.8
O23 C24 C25 H24 238.2 237.5
C31 C24 C25 H24 124.2 118.9
O26 C25 C24 H25 240.0 241.1
O26 C25 C24 H25A 120.0 118.9
H25 C25 C24 H25A 240.0 237.8
O23 C24 H24 C25 120.9 122.5
H24 C24 C25 H25 320.7 335.7
H24 C24 C25 H25A 80.7 98.0
O26 C25 C24 H24 200.7 216.9
C24 C25 O26 H25 120.0 118.9
C24 C25 O26 H25A 240.0 241.1
H25 C25 O26 H25A 120.0 122.2
H25 C25 C24 H24 320.7 335.7
C24 C25 H25 H25A 121.4 122.3
O26 C25 H25 H25A 238.6 237.7
H25A C25 C24 H24 80.7 98.0
C24 C25 H25A H25 238.6 237.7
O26 C25 H25A H25 121.4 122.3
C27 O26 C25 H25 263.1 281.8
C27 O26 C25 H25A 143.1 159.6
C27 C31 C24 H24 158.4 119.2
O28 C27 C31 H27 237.8 237.2
C31 C27 O28 H27 122.1 122.9
C29 O28 C27 H27 249.8 197.6
C30 C29 O41 H29 237.0 236.6
O41 C29 C30 H29 122.7 123.3
C43 C30 C29 H29 223.5 214.3
C31 C30 C43 H30 238.8 232.9
C43 C30 C31 H31 39.6 12.8
C30 C31 C24 H24 270.0 228.8
C30 C31 C27 H27 99.7 147.3
C31 C30 C29 H29 104.5 100.4
C43 C30 C31 H30 121.8 127.5
H30 C30 C29 H29 344.2 336.9
H30 C30 C31 H31 277.9 245.3
H31 C31 C24 H24 31.5 355.2
H31 C31 C27 H27 339.4 24.4
H31 C31 C30 H30 277.9 245.3
C38 C32 C19 H19 61.2 55.0
H32 C32 C38 H32A 120.0 120.0
H32 C32 C19 H19 181.2 175.0
C38 C32 H32 H32A 240.6 240.1
H32A C32 C19 H19 301.2 295.0
C38 C32 H32A H32 119.4 120.0
C38 C33 C34 H33 180.0 180.3
C34 C33 C38 C37 0.5 360.0
C33 C38 C32 H32 346.9 329.9
C33 C38 C32 H32A 226.9 210.0
C34 C33 C38 H33 180.0 179.7
C36 C37 C38 C33 0.1 0.0
C33 C38 C37 H37 180.1 180.0
C34 C33 H33 C38 180.0 180.3
H33 C33 C38 C37 180.6 180.3
C35 C34 C33 C38 357.1 0.0
C35 C34 C33 H33 177.0 179.7
H34 C34 C33 C38 177.1 180.0
H34 C34 C33 H33 357.0 359.7
C36 C35 C34 H34 184.8 180.0
C37 C36 C35 H36 180.0 180.1
C35 C36 C37 C38 1.8 360.0
C35 C36 C37 H37 181.8 180.0
H35 C35 C34 H34 4.8 359.9
H35 C35 C36 C37 175.7 180.1
H35 C35 C36 H36 355.7 0.0
C33 C38 C37 C36 0.1 0.0
C37 C36 C35 H35 175.7 180.1
C35 C36 C37 H36 180.0 179.9
C38 C37 C36 H37 180.0 180.0
H36 C36 C35 H35 355.7 0.0
C35 C36 H36 C37 180.0 180.1
H36 C36 C37 C38 181.8 180.0
H36 C36 C37 H37 1.8 0.0
C37 C38 C32 H32 167.4 149.7
C37 C38 C32 H32A 47.4 29.7
C37 C38 C33 H33 180.6 180.3
C38 C37 C36 H36 181.8 180.0
C36 C37 C38 H37 180.0 180.0
H37 C37 C36 H36 1.8 0.0
C36 C37 H37 C38 180.0 180.0
H40 C40 O39 H40A 240.0 240.0
H40 C40 O39 H40B 120.0 120.0
H40A C40 O39 H40B 240.0 240.0
O39 C40 H40 H40A 120.0 120.0
O39 C40 H40 H40B 240.0 239.9
H40A C40 H40 H40B 120.0 119.9
O39 C40 H40A H40 240.0 240.0
O39 C40 H40A H40B 120.0 120.1
H40 C40 H40A H40B 240.0 240.1
O39 C40 H40B H40 120.0 120.0
O39 C40 H40B H40A 240.0 240.0
H40 C40 H40B H40A 120.0 119.9
C42 O41 C29 H29 161.1 122.7
C42 C43 C30 H30 219.6 271.9
H42 C42 C43 H42A 120.0 122.3
C43 C42 H42 H42A 236.9 238.0
C43 C42 H42A H42 123.1 122.8
H43 C43 C30 H30 339.6 30.3
H43 C43 C42 H42 157.1 86.7
H43 C43 C42 H42A 37.1 324.4
H43A C43 C30 H30 99.6 154.4
H43A C43 C42 H42 37.1 322.5
H43A C43 C42 H42A 277.1 200.2