PDB Chemical Component G50
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for G50
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C2 |
C1 |
1.378 |
1.395 |
C3 |
C2 |
1.388 |
1.395 |
C3 |
C4 |
1.396 |
1.395 |
C5 |
C4 |
1.408 |
1.395 |
C6 |
C5 |
1.410 |
1.395 |
C1 |
C6 |
1.389 |
1.395 |
C5 |
C7 |
1.560 |
1.459 |
C7 |
C8 |
1.559 |
1.538 |
C8 |
C9 |
1.614 |
1.531 |
C6 |
O1 |
1.348 |
1.363 |
C7 |
O2 |
1.231 |
1.246 |
C9 |
C10 |
1.551 |
1.506 |
C10 |
C11 |
1.399 |
1.387 |
C11 |
C12 |
1.385 |
1.394 |
C12 |
C13 |
1.383 |
1.396 |
C13 |
C14 |
1.407 |
1.395 |
C10 |
C15 |
1.410 |
1.387 |
C14 |
C15 |
1.401 |
1.395 |
C13 |
O3 |
1.364 |
1.361 |
C2 |
O4 |
1.338 |
1.361 |
C4 |
O5 |
1.359 |
1.363 |
C3 |
H3 |
1.080 |
1.087 |
C1 |
H1 |
1.080 |
1.087 |
O4 |
H4 |
0.951 |
0.970 |
O1 |
HA |
0.950 |
0.970 |
O5 |
H5 |
0.950 |
0.969 |
C8 |
H8C1 |
1.100 |
1.096 |
C8 |
H8C2 |
1.100 |
1.097 |
C9 |
H9C1 |
1.100 |
1.098 |
C9 |
H9C2 |
1.100 |
1.098 |
C11 |
H11 |
1.080 |
1.087 |
C15 |
H15 |
1.080 |
1.087 |
C12 |
H12 |
1.080 |
1.087 |
C14 |
H14 |
1.080 |
1.087 |
O3 |
HB |
0.950 |
0.971 |
Bond Angles for G50
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C2 |
C1 |
C6 |
119.0 |
120.0 |
C2 |
C1 |
H1 |
120.5 |
120.0 |
C3 |
C2 |
O4 |
120.3 |
120.0 |
C3 |
C4 |
O5 |
117.3 |
119.1 |
C4 |
C3 |
H3 |
119.7 |
120.1 |
C5 |
C4 |
O5 |
123.0 |
120.9 |
C1 |
C6 |
C5 |
121.7 |
120.0 |
C6 |
C5 |
C7 |
118.9 |
120.0 |
C1 |
C6 |
O1 |
115.7 |
119.0 |
C6 |
C1 |
H1 |
120.5 |
120.0 |
C5 |
C7 |
C8 |
123.9 |
119.8 |
C5 |
C7 |
O2 |
117.9 |
120.6 |
C7 |
C8 |
C9 |
109.8 |
113.2 |
C8 |
C7 |
O2 |
118.2 |
119.6 |
C7 |
C8 |
H8C1 |
109.3 |
107.9 |
C7 |
C8 |
H8C2 |
109.3 |
107.9 |
C8 |
C9 |
C10 |
110.3 |
111.7 |
C9 |
C8 |
H8C1 |
109.4 |
109.3 |
C9 |
C8 |
H8C2 |
109.3 |
109.3 |
C8 |
C9 |
H9C1 |
109.2 |
110.3 |
C8 |
C9 |
H9C2 |
109.0 |
110.3 |
C6 |
O1 |
HA |
109.5 |
110.1 |
C9 |
C10 |
C11 |
117.8 |
119.4 |
C9 |
C10 |
C15 |
122.4 |
119.5 |
C10 |
C9 |
H9C1 |
109.2 |
109.5 |
C10 |
C9 |
H9C2 |
109.0 |
109.4 |
C10 |
C11 |
C12 |
120.4 |
119.5 |
C11 |
C10 |
C15 |
119.8 |
121.1 |
C10 |
C11 |
H11 |
119.8 |
121.1 |
C11 |
C12 |
C13 |
120.4 |
120.0 |
C12 |
C11 |
H11 |
119.8 |
119.4 |
C11 |
C12 |
H12 |
119.8 |
119.7 |
C12 |
C13 |
C14 |
120.1 |
120.0 |
C12 |
C13 |
O3 |
117.3 |
120.0 |
C13 |
C12 |
H12 |
119.8 |
120.3 |
C13 |
C14 |
C15 |
120.0 |
120.0 |
C14 |
C13 |
O3 |
122.6 |
120.0 |
C13 |
C14 |
H14 |
120.0 |
120.3 |
C10 |
C15 |
C14 |
119.3 |
119.4 |
C10 |
C15 |
H15 |
120.4 |
121.0 |
C14 |
C15 |
H15 |
120.3 |
119.5 |
C15 |
C14 |
H14 |
120.0 |
119.7 |
C13 |
O3 |
HB |
109.5 |
110.3 |
C2 |
O4 |
H4 |
109.5 |
110.3 |
C4 |
O5 |
H5 |
109.5 |
110.2 |
H8C1 |
C8 |
H8C2 |
109.7 |
109.0 |
H9C1 |
C9 |
H9C2 |
110.1 |
105.5 |
Torsion Angles for G50
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C2 |
C1 |
C6 |
C5 |
0.5 |
0.1 |
C2 |
C1 |
C6 |
O1 |
180.4 |
180.0 |
C6 |
C1 |
C2 |
H1 |
180.0 |
179.9 |
C3 |
C2 |
C1 |
C6 |
359.4 |
359.9 |
C3 |
C2 |
C1 |
H1 |
179.4 |
180.0 |
C3 |
C2 |
O4 |
H4 |
110.6 |
90.8 |
C4 |
C3 |
C2 |
O4 |
180.5 |
180.0 |
C5 |
C4 |
C3 |
O5 |
180.3 |
180.1 |
C3 |
C4 |
O5 |
H5 |
280.1 |
185.9 |
C3 |
C4 |
C5 |
O5 |
179.7 |
179.9 |
C5 |
C4 |
C3 |
H3 |
180.3 |
180.1 |
C1 |
C6 |
C5 |
C4 |
0.1 |
360.0 |
C5 |
C4 |
O5 |
H5 |
99.8 |
5.8 |
C6 |
C5 |
C4 |
O5 |
179.8 |
180.1 |
C1 |
C6 |
C5 |
O1 |
180.0 |
179.9 |
C5 |
C6 |
C1 |
H1 |
180.4 |
180.0 |
C6 |
C5 |
C7 |
C8 |
138.2 |
270.0 |
C6 |
C5 |
C7 |
O2 |
319.1 |
89.9 |
C2 |
C1 |
C6 |
H1 |
180.0 |
180.1 |
C1 |
C6 |
C5 |
C7 |
179.8 |
180.0 |
C1 |
C6 |
O1 |
HA |
243.7 |
347.6 |
C7 |
C5 |
C4 |
O5 |
0.1 |
0.1 |
C5 |
C7 |
C8 |
C9 |
164.9 |
208.7 |
C8 |
C7 |
C5 |
O2 |
179.1 |
180.1 |
C5 |
C7 |
C8 |
H8C1 |
284.9 |
329.9 |
C5 |
C7 |
C8 |
H8C2 |
45.0 |
87.6 |
C5 |
C7 |
C8 |
O2 |
180.9 |
179.9 |
C7 |
C8 |
C9 |
C10 |
178.4 |
180.4 |
C9 |
C8 |
C7 |
H8C1 |
240.0 |
238.8 |
C9 |
C8 |
C7 |
H8C2 |
119.9 |
121.1 |
C7 |
C8 |
C9 |
H9C1 |
298.4 |
302.4 |
C7 |
C8 |
C9 |
H9C2 |
58.8 |
58.5 |
H8C1 |
C8 |
C7 |
H8C2 |
239.9 |
242.3 |
C9 |
C8 |
C7 |
O2 |
343.9 |
28.9 |
C7 |
C8 |
C9 |
H8C1 |
120.0 |
120.4 |
C7 |
C8 |
C9 |
H8C2 |
240.1 |
239.7 |
C8 |
C9 |
C10 |
C11 |
325.0 |
270.0 |
C8 |
C9 |
C10 |
C15 |
144.2 |
90.0 |
C10 |
C9 |
C8 |
H9C1 |
240.0 |
238.0 |
C10 |
C9 |
C8 |
H9C2 |
119.6 |
121.9 |
H8C1 |
C8 |
C9 |
H8C2 |
120.1 |
119.3 |
H9C1 |
C9 |
C8 |
H9C2 |
239.7 |
243.9 |
C1 |
C6 |
O1 |
C5 |
180.0 |
180.1 |
O1 |
C6 |
C5 |
C7 |
359.8 |
0.1 |
O1 |
C6 |
C1 |
H1 |
0.4 |
359.9 |
C5 |
C7 |
O2 |
C8 |
179.1 |
180.1 |
O2 |
C7 |
C8 |
C9 |
343.9 |
28.9 |
O2 |
C7 |
C8 |
H8C1 |
104.0 |
150.0 |
O2 |
C7 |
C8 |
H8C2 |
224.1 |
267.7 |
C10 |
C9 |
C8 |
H8C1 |
58.4 |
60.0 |
C10 |
C9 |
C8 |
H8C2 |
298.3 |
300.7 |
C8 |
C9 |
C10 |
H9C1 |
120.0 |
122.4 |
C8 |
C9 |
C10 |
H9C2 |
240.4 |
237.7 |
C9 |
C10 |
C11 |
C12 |
178.5 |
180.0 |
C11 |
C10 |
C9 |
C15 |
180.8 |
180.0 |
C9 |
C10 |
C11 |
H11 |
358.5 |
360.0 |
C9 |
C10 |
C15 |
C14 |
180.5 |
180.0 |
C9 |
C10 |
C15 |
H15 |
0.5 |
360.0 |
H9C1 |
C9 |
C10 |
H9C2 |
120.4 |
115.2 |
C9 |
C10 |
C11 |
C15 |
179.2 |
180.0 |
C11 |
C10 |
C9 |
H9C1 |
205.0 |
147.6 |
C11 |
C10 |
C9 |
H9C2 |
84.6 |
32.4 |
C10 |
C11 |
C12 |
C13 |
1.4 |
360.0 |
C12 |
C11 |
C10 |
H11 |
180.0 |
180.0 |
C10 |
C11 |
C12 |
H12 |
181.4 |
180.0 |
C11 |
C10 |
C15 |
C14 |
359.7 |
0.0 |
C11 |
C10 |
C15 |
H15 |
179.7 |
180.0 |
C12 |
C11 |
C10 |
C15 |
359.3 |
0.0 |
C10 |
C11 |
C12 |
H11 |
180.0 |
180.0 |
C11 |
C12 |
C13 |
C14 |
358.9 |
0.0 |
C11 |
C12 |
C13 |
O3 |
179.8 |
179.9 |
C13 |
C12 |
C11 |
H12 |
180.0 |
180.0 |
C13 |
C12 |
C11 |
H11 |
181.4 |
180.0 |
C11 |
C12 |
C13 |
H12 |
180.0 |
180.0 |
C12 |
C13 |
C14 |
C15 |
0.1 |
0.0 |
C14 |
C13 |
C12 |
O3 |
179.1 |
180.1 |
C12 |
C13 |
C14 |
H14 |
180.1 |
179.9 |
C12 |
C13 |
O3 |
HB |
340.7 |
330.0 |
C12 |
C13 |
C14 |
O3 |
180.9 |
179.9 |
C14 |
C13 |
C12 |
H12 |
178.9 |
180.0 |
C10 |
C15 |
C14 |
C13 |
0.6 |
359.9 |
C13 |
C14 |
C15 |
H15 |
180.6 |
180.0 |
C15 |
C14 |
C13 |
H14 |
180.0 |
180.1 |
C14 |
C13 |
O3 |
HB |
161.6 |
149.9 |
C9 |
C10 |
C15 |
C11 |
180.8 |
180.0 |
C15 |
C10 |
C9 |
H9C1 |
24.2 |
327.6 |
C15 |
C10 |
C9 |
H9C2 |
263.8 |
212.4 |
C15 |
C10 |
C11 |
C12 |
359.3 |
0.0 |
C15 |
C10 |
C11 |
H11 |
179.3 |
180.0 |
C13 |
C14 |
C15 |
C10 |
0.6 |
359.9 |
C14 |
C15 |
C10 |
H15 |
180.0 |
180.0 |
C10 |
C15 |
C14 |
H14 |
180.6 |
180.1 |
C15 |
C14 |
C13 |
O3 |
179.2 |
180.1 |
C13 |
C14 |
C15 |
H14 |
180.0 |
179.9 |
C10 |
C15 |
C14 |
H15 |
180.0 |
180.0 |
C12 |
C13 |
O3 |
C14 |
179.1 |
180.1 |
O3 |
C13 |
C12 |
H12 |
359.7 |
359.9 |
O3 |
C13 |
C14 |
C15 |
179.2 |
180.1 |
O3 |
C13 |
C14 |
H14 |
359.2 |
0.0 |
O4 |
C2 |
C1 |
C6 |
179.1 |
180.0 |
O4 |
C2 |
C1 |
H1 |
359.1 |
0.0 |
O5 |
C4 |
C3 |
H3 |
0.0 |
360.0 |
H3 |
C3 |
C2 |
O4 |
0.5 |
359.9 |
H3 |
C3 |
C4 |
O5 |
0.0 |
360.0 |
C2 |
C1 |
H1 |
C6 |
180.0 |
179.9 |
H1 |
C1 |
C6 |
C5 |
180.4 |
180.0 |
H1 |
C1 |
C6 |
O1 |
0.4 |
359.9 |
C7 |
C8 |
H8C1 |
C9 |
239.7 |
236.4 |
H8C1 |
C8 |
C7 |
O2 |
104.0 |
150.0 |
C7 |
C8 |
H8C1 |
H8C2 |
119.8 |
117.0 |
H8C1 |
C8 |
C9 |
C10 |
58.4 |
60.0 |
C9 |
C8 |
H8C1 |
H8C2 |
240.1 |
240.6 |
H8C1 |
C8 |
C9 |
H9C1 |
178.5 |
182.0 |
H8C1 |
C8 |
C9 |
H9C2 |
298.8 |
298.1 |
C7 |
C8 |
H8C2 |
C9 |
120.2 |
123.5 |
H8C2 |
C8 |
C7 |
O2 |
224.1 |
267.7 |
C7 |
C8 |
H8C2 |
H8C1 |
240.1 |
243.0 |
H8C2 |
C8 |
C9 |
C10 |
298.3 |
300.7 |
C9 |
C8 |
H8C2 |
H8C1 |
119.9 |
119.5 |
H8C2 |
C8 |
C9 |
H9C1 |
58.3 |
62.7 |
H8C2 |
C8 |
C9 |
H9C2 |
178.7 |
178.8 |
C8 |
C9 |
H9C1 |
C10 |
239.3 |
236.7 |
H9C1 |
C9 |
C8 |
H8C1 |
178.5 |
182.0 |
H9C1 |
C9 |
C8 |
H8C2 |
58.3 |
62.7 |
C8 |
C9 |
H9C1 |
H9C2 |
119.7 |
119.1 |
H9C1 |
C9 |
C10 |
C11 |
205.0 |
147.6 |
H9C1 |
C9 |
C10 |
C15 |
24.2 |
327.6 |
C10 |
C9 |
H9C1 |
H9C2 |
240.3 |
242.3 |
C8 |
C9 |
H9C2 |
C10 |
120.5 |
123.2 |
H9C2 |
C9 |
C8 |
H8C1 |
298.8 |
298.1 |
H9C2 |
C9 |
C8 |
H8C2 |
178.7 |
178.8 |
C8 |
C9 |
H9C2 |
H9C1 |
240.2 |
240.9 |
H9C2 |
C9 |
C10 |
C11 |
84.6 |
32.4 |
H9C2 |
C9 |
C10 |
C15 |
263.8 |
212.4 |
C10 |
C9 |
H9C2 |
H9C1 |
119.8 |
117.7 |
C10 |
C11 |
H11 |
C12 |
180.0 |
180.0 |
H11 |
C11 |
C10 |
C15 |
179.3 |
180.0 |
H11 |
C11 |
C12 |
C13 |
181.4 |
180.0 |
H11 |
C11 |
C12 |
H12 |
1.5 |
0.0 |
C10 |
C15 |
H15 |
C14 |
180.0 |
180.0 |
H15 |
C15 |
C14 |
H14 |
0.6 |
0.1 |
C11 |
C12 |
H12 |
C13 |
180.0 |
180.0 |
H12 |
C12 |
C11 |
H11 |
1.5 |
0.0 |
H12 |
C12 |
C13 |
C14 |
178.9 |
180.0 |
H12 |
C12 |
C13 |
O3 |
359.7 |
359.9 |
C13 |
C14 |
H14 |
C15 |
180.0 |
180.1 |
H14 |
C14 |
C13 |
O3 |
359.2 |
0.0 |
H14 |
C14 |
C15 |
H15 |
0.6 |
0.1 |