PDB Chemical Component G4P

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for G4P

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
PB O1B 1.471 1.480
PB O2B 1.478 1.610
PB O3B 1.534 1.610
PB O3A 1.676 1.610
O2B HOB2 0.950 0.966
O3B HOB3 0.950 0.966
O3A PA 1.604 1.611
PA O1A 1.477 1.480
PA O2A 1.489 1.610
PA O5' 1.582 1.610
O2A HOA2 0.950 0.967
O5' C5' 1.403 1.429
C5' C4' 1.552 1.530
C5' H5' 1.100 1.090
C5' H5'' 1.100 1.090
C4' O4' 1.464 1.444
C4' C3' 1.605 1.545
C4' H4' 1.100 1.090
O4' C1' 1.403 1.444
C3' O3' 1.449 1.429
C3' C2' 1.548 1.547
C3' H3' 1.100 1.090
O3' PC 1.368 1.610
C2' O2' 1.441 1.429
C2' C1' 1.478 1.545
C2' H2' 1.100 1.090
O2' HO2' 0.950 0.967
C1' N9 1.511 1.465
C1' H1' 1.100 1.090
N9 C8 1.375 1.365
N9 C4 1.401 1.368
C8 N7 1.305 1.301
C8 H8 1.081 1.080
N7 C5 1.365 1.355
C5 C6 1.446 1.414
C5 C4 1.399 1.399
C6 O6 1.210 1.219
C6 N1 1.422 1.351
N1 C2 1.391 1.363
N1 HN1 1.000 0.970
C2 N2 1.321 1.372
C2 N3 1.395 1.314
N2 HN21 1.000 0.969
N2 HN22 1.000 0.970
N3 C4 1.383 1.338
PC O1C 1.498 1.480
PC O2C 1.487 1.610
PC O3C 1.681 1.610
O2C H2C 0.950 0.967
O3C PD 1.731 1.610
PD O1D 1.485 1.480
PD O2D 1.510 1.609
PD O3D 1.573 1.611
O2D H2D 0.950 0.967
O3D H3D 0.950 0.967

Bond Angles for G4P

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O1B PB O2B 120.5 109.5
O1B PB O3B 117.5 109.5
O1B PB O3A 105.5 109.5
O2B PB O3B 97.3 109.4
O2B PB O3A 100.9 109.5
PB O2B HOB2 109.5 106.9
O3B PB O3A 114.3 109.5
PB O3B HOB3 109.5 106.8
PB O3A PA 122.1 106.8
O3A PA O1A 94.6 109.5
O3A PA O2A 118.7 109.5
O3A PA O5' 100.1 109.4
O1A PA O2A 117.3 109.5
O1A PA O5' 105.6 109.5
O2A PA O5' 117.0 109.4
PA O2A HOA2 109.5 106.8
PA O5' C5' 127.8 106.8
O5' C5' C4' 109.5 109.5
O5' C5' H5' 109.5 109.5
O5' C5' H5'' 109.5 109.5
C4' C5' H5' 109.5 109.5
C4' C5' H5'' 109.5 109.5
C5' C4' O4' 115.7 110.4
C5' C4' C3' 117.4 110.5
C5' C4' H4' 96.6 110.4
H5' C5' H5'' 109.4 109.4
O4' C4' C3' 100.7 104.8
O4' C4' H4' 114.6 110.4
C4' O4' C1' 116.0 105.3
C3' C4' H4' 112.7 110.3
C4' C3' O3' 106.8 110.5
C4' C3' C2' 107.8 104.1
C4' C3' H3' 112.6 110.5
O4' C1' C2' 109.8 104.9
O4' C1' N9 109.2 110.4
O4' C1' H1' 110.9 110.4
O3' C3' C2' 110.2 110.6
O3' C3' H3' 110.2 110.5
C3' O3' PC 154.3 106.8
C2' C3' H3' 109.3 110.5
C3' C2' O2' 111.6 110.5
C3' C2' C1' 104.8 104.0
C3' C2' H2' 111.5 110.5
O3' PC O1C 118.5 109.5
O3' PC O2C 101.8 109.5
O3' PC O3C 97.5 109.4
O2' C2' C1' 110.5 110.8
O2' C2' H2' 105.9 110.4
C2' O2' HO2' 109.5 106.8
C1' C2' H2' 112.6 110.5
C2' C1' N9 113.3 110.4
C2' C1' H1' 106.5 110.4
N9 C1' H1' 107.1 110.3
C1' N9 C8 134.3 126.2
C1' N9 C4 120.6 126.3
C8 N9 C4 105.1 107.5
N9 C8 N7 113.8 109.8
N9 C8 H8 123.1 125.1
N9 C4 C5 105.1 106.1
N9 C4 N3 125.0 134.2
N7 C8 H8 123.1 125.1
C8 N7 C5 105.4 109.3
N7 C5 C6 133.0 134.1
N7 C5 C4 110.6 107.2
C6 C5 C4 116.4 118.6
C5 C6 O6 127.9 120.9
C5 C6 N1 114.8 118.4
C5 C4 N3 129.9 119.7
O6 C6 N1 117.3 120.8
C6 N1 C2 124.5 120.3
C6 N1 HN1 117.8 119.9
C2 N1 HN1 117.8 119.8
N1 C2 N2 116.8 119.1
N1 C2 N3 122.1 121.8
N2 C2 N3 121.1 119.1
C2 N2 HN21 125.3 120.0
C2 N2 HN22 109.4 119.9
C2 N3 C4 112.4 121.2
HN21 N2 HN22 125.3 120.0
O1C PC O2C 118.5 109.5
O1C PC O3C 98.4 109.5
O2C PC O3C 121.4 109.5
PC O2C H2C 109.5 106.9
PC O3C PD 122.3 106.8
O3C PD O1D 106.4 109.5
O3C PD O2D 100.8 109.5
O3C PD O3D 115.8 109.5
O1D PD O2D 117.2 109.5
O1D PD O3D 117.7 109.5
O2D PD O3D 97.9 109.5
PD O2D H2D 109.5 106.8
PD O3D H3D 109.5 106.7

Torsion Angles for G4P

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O2B PB O1B O3B 241.7 120.0
O2B PB O1B O3A 113.0 240.0
O1B PB O2B HOB2 314.3 300.0
O3B PB O1B O3A 231.3 120.0
O1B PB O3B HOB3 230.7 180.1
O1B PB O3A PA 307.2 45.0
O1B PB O2B O3B 128.1 240.0
O1B PB O2B O3A 244.6 120.0
O3B PB O2B O3A 116.5 240.0
O2B PB O3B HOB3 0.8 60.1
O2B PB O3A PA 181.1 165.0
O1B PB O3B O2B 229.9 120.0
O1B PB O3B O3A 124.4 240.0
O2B PB O3B O3A 254.5 120.0
O3B PB O2B HOB2 186.3 60.0
O3B PB O3A PA 77.8 285.0
O1B PB O3A O2B 126.1 240.0
O1B PB O3A O3B 229.4 120.0
O2B PB O3A O3B 103.3 240.1
O3A PB O2B HOB2 69.7 180.0
O3A PB O3B HOB3 106.4 300.1
PB O3A PA O1A 239.6 320.0
PB O3A PA O2A 4.3 80.0
PB O3A PA O5' 132.8 200.0
HOB2 O2B PB O3B 186.3 60.0
HOB2 O2B PB O3A 69.7 180.0
HOB3 O3B PB O3A 106.4 300.1
O1A PA O3A O2A 235.3 240.0
O1A PA O3A O5' 106.7 120.0
O2A PA O3A O5' 231.4 240.1
O3A PA O2A HOA2 191.1 59.9
O3A PA O5' C5' 276.6 175.0
O3A PA O1A O2A 125.7 120.0
O3A PA O1A O5' 258.1 240.0
O2A PA O1A O5' 132.4 120.0
O1A PA O2A HOA2 303.9 179.9
O1A PA O5' C5' 178.9 55.0
O3A PA O2A O1A 247.3 240.0
O3A PA O2A O5' 120.3 119.9
O1A PA O2A O5' 233.0 240.0
O2A PA O5' C5' 46.3 295.0
O3A PA O5' O1A 97.8 120.0
O3A PA O5' O2A 230.3 240.0
O1A PA O5' O2A 132.6 120.0
O5' PA O2A HOA2 70.9 300.0
PA O5' C5' C4' 217.6 180.0
PA O5' C5' H5' 97.6 60.0
PA O5' C5' H5'' 337.6 300.0
HOA2 O2A PA O5' 70.9 300.0
C4' C5' O5' H5' 120.0 120.0
C4' C5' O5' H5'' 240.0 240.0
O5' C5' C4' O4' 281.1 66.5
O5' C5' C4' C3' 39.9 181.9
O5' C5' C4' H4' 159.7 304.2
H5' C5' O5' H5'' 120.0 120.0
O5' C5' C4' H5' 240.0 240.0
O5' C5' C4' H5'' 120.0 120.0
H5' C5' C4' H5'' 240.0 240.0
O4' C4' C5' C3' 241.2 244.6
O4' C4' C5' H4' 121.3 122.3
C5' C4' O4' C1' 125.0 159.4
C3' C4' C5' H4' 240.1 237.7
C5' C4' C3' O3' 122.9 98.4
C5' C4' C3' C2' 241.3 217.1
C5' C4' C3' H3' 1.9 335.8
O5' C5' H5' C4' 120.0 120.0
O5' C5' H5' H5'' 240.0 240.0
C4' C5' H5' H5'' 120.0 120.0
H5' C5' C4' O4' 41.1 186.5
H5' C5' C4' C3' 159.9 301.9
H5' C5' C4' H4' 279.7 64.2
O5' C5' H5'' C4' 240.0 240.0
O5' C5' H5'' H5' 120.0 120.0
C4' C5' H5'' H5' 240.0 240.0
H5'' C5' C4' O4' 161.1 306.5
H5'' C5' C4' C3' 279.8 61.9
H5'' C5' C4' H4' 39.7 184.2
O4' C4' C5' H5' 41.1 186.5
O4' C4' C5' H5'' 161.1 306.5
C5' C4' O4' C3' 127.7 118.9
C5' C4' O4' H4' 248.9 237.7
C3' C4' O4' H4' 121.2 118.8
O4' C4' C3' O3' 249.5 217.2
O4' C4' C3' C2' 7.8 335.9
O4' C4' C3' H3' 128.4 94.6
C4' O4' C1' C2' 356.1 319.5
C4' O4' C1' N9 231.4 200.6
C4' O4' C1' H1' 113.6 78.4
C3' C4' C5' H5' 159.9 301.9
C3' C4' C5' H5'' 279.8 61.9
C5' C4' C3' O4' 233.5 241.1
C5' C4' C3' H4' 111.0 122.3
O4' C4' C3' H4' 237.5 241.2
C3' C4' O4' C1' 357.4 40.5
O3' C3' C4' C2' 241.6 241.3
O3' C3' C4' H3' 121.1 122.6
C4' C3' O3' PC 190.4 240.0
C2' C3' C4' H3' 239.4 241.3
C4' C3' C2' O2' 230.2 241.2
C4' C3' C2' C1' 349.9 0.1
C4' C3' C2' H2' 112.0 118.7
H4' C4' C5' H5' 279.7 64.2
H4' C4' C5' H5'' 39.7 184.2
C5' C4' H4' O4' 122.2 122.3
C5' C4' H4' C3' 236.5 237.6
O4' C4' H4' C3' 114.3 115.3
H4' C4' O4' C1' 236.1 281.7
H4' C4' C3' O3' 12.0 336.1
H4' C4' C3' C2' 130.3 94.8
H4' C4' C3' H3' 250.9 213.5
C1' O4' C4' C3' 357.4 40.5
C1' O4' C4' H4' 236.1 281.7
C3' C2' C1' O4' 8.7 23.9
O2' C2' C1' O4' 129.1 142.6
O4' C1' C2' H2' 247.3 265.3
C2' C1' O4' N9 124.8 118.9
C2' C1' O4' H1' 242.6 241.1
N9 C1' O4' H1' 117.8 122.2
O4' C1' N9 C8 62.8 22.0
O4' C1' N9 C4 243.3 202.0
O3' C3' C4' H4' 12.0 336.1
C4' C3' O3' C2' 116.8 114.7
C4' C3' O3' H3' 237.5 237.4
C2' C3' O3' H3' 120.7 122.7
O3' C3' C2' O2' 346.4 359.9
O3' C3' C2' C1' 106.0 118.8
O3' C3' C2' H2' 228.1 237.4
C3' O3' PC O1C 318.1 55.0
C3' O3' PC O2C 186.3 295.0
C3' O3' PC O3C 62.0 175.0
C2' C3' C4' H4' 130.3 94.8
C4' C3' C2' O3' 243.8 241.3
C4' C3' C2' H3' 122.6 118.7
O4' C1' C2' C3' 8.7 23.9
O3' C3' C2' H3' 238.8 237.3
C2' C3' O3' PC 73.7 125.3
O2' C2' C3' C1' 240.3 241.1
O2' C2' C3' H2' 118.2 122.5
C3' C2' O2' HO2' 178.2 180.0
C1' C2' C3' H2' 237.9 241.4
C3' C2' C1' N9 131.0 142.8
C3' C2' C1' H1' 248.5 264.9
H3' C3' C4' H4' 250.9 213.5
C4' C3' H3' O3' 119.1 122.6
C4' C3' H3' C2' 240.3 245.3
O3' C3' H3' C2' 121.2 122.7
H3' C3' O3' PC 313.0 2.6
H3' C3' C2' O2' 107.6 122.5
H3' C3' C2' C1' 227.3 241.5
H3' C3' C2' H2' 349.4 0.0
PC O3' C3' C2' 73.7 125.3
PC O3' C3' H3' 313.0 2.6
O1C PC O3' O2C 131.8 120.0
O1C PC O3' O3C 256.2 240.0
O2C PC O3' O3C 124.3 120.0
O3' PC O2C H2C 182.6 300.1
O3' PC O3C PD 97.9 200.0
O4' C1' C2' O2' 129.1 142.6
O2' C2' C3' H3' 107.6 122.5
C3' C2' O2' C1' 116.2 114.7
C3' C2' O2' H2' 238.5 237.4
C1' C2' O2' H2' 122.3 122.8
O2' C2' C1' N9 251.4 261.5
O2' C2' C1' H1' 8.9 23.6
O4' C1' C2' N9 237.7 241.1
O4' C1' C2' H1' 120.1 118.9
C1' C2' C3' H3' 227.3 241.5
C3' C2' C1' O2' 239.6 241.3
C3' C2' C1' H2' 121.4 118.6
O2' C2' C1' H2' 241.8 237.3
C1' C2' O2' HO2' 62.0 65.3
N9 C1' C2' H1' 242.5 237.9
C2' C1' N9 C8 300.1 266.5
C2' C1' N9 C4 120.6 86.5
H2' C2' C3' H3' 349.4 0.0
C3' C2' H2' O2' 121.6 122.5
C3' C2' H2' C1' 242.5 245.5
O2' C2' H2' C1' 120.9 123.0
H2' C2' O2' HO2' 299.7 302.5
H2' C2' C1' N9 9.6 24.2
H2' C2' C1' H1' 127.1 146.4
HO2' O2' C2' C1' 62.0 65.3
HO2' O2' C2' H2' 299.7 302.5
O4' C1' N9 C2' 122.7 115.5
O4' C1' N9 H1' 239.9 237.7
N9 C1' C2' H2' 9.6 24.2
C2' C1' N9 H1' 117.2 122.2
C8 N9 C1' C4 179.5 180.0
C1' N9 C8 N7 179.8 180.0
C1' N9 C8 H8 359.8 0.0
C1' N9 C4 C5 180.2 180.0
C1' N9 C4 N3 359.4 360.0
O4' C1' H1' C2' 240.6 244.5
O4' C1' H1' N9 119.0 122.3
H1' C1' C2' H2' 127.1 146.4
C2' C1' H1' N9 238.4 237.8
H1' C1' N9 C8 183.0 144.3
H1' C1' N9 C4 3.5 324.3
C8 N9 C1' H1' 183.0 144.3
C1' N9 C8 C4 180.5 180.0
C8 N9 C4 C5 0.6 360.0
C8 N9 C4 N3 179.7 180.0
N7 C8 N9 H8 180.0 180.0
N9 C8 N7 C5 0.4 0.1
C4 N9 C1' H1' 3.5 324.3
C1' N9 C4 C8 179.6 180.0
C4 N9 C8 N7 359.3 360.0
C4 N9 C8 H8 179.4 180.0
N7 C5 C4 N9 359.7 0.1
C6 C5 C4 N9 179.2 180.0
C5 C4 N9 N3 180.8 180.0
C2 N3 C4 N9 180.4 180.0
N7 C8 N9 C4 359.3 360.0
N9 C8 N7 H8 180.0 180.0
C8 N7 C5 C6 180.5 180.0
C8 N7 C5 C4 360.0 359.9
H8 C8 N9 C4 179.4 180.0
N9 C8 H8 N7 180.0 180.0
H8 C8 N7 C5 180.4 180.0
N9 C4 C5 N7 359.7 0.1
C5 N7 C8 H8 180.4 180.0
C6 C5 N7 C4 180.6 180.1
N7 C5 C6 O6 359.4 359.9
N7 C5 C6 N1 180.1 179.6
N7 C5 C4 N3 180.5 180.1
N9 C4 C5 C6 179.2 180.0
N7 C5 C6 C4 179.4 179.9
C6 C5 C4 N3 0.1 360.0
O6 C6 C5 N1 179.3 180.2
C5 C6 N1 C2 359.2 0.6
C5 C6 N1 HN1 179.2 180.0
N9 C4 C5 N3 179.1 180.0
N7 C5 C4 C6 180.5 180.1
C4 C5 C6 O6 179.9 180.0
C4 C5 C6 N1 0.6 359.8
C2 N3 C4 C5 359.4 360.0
O6 C6 C5 C4 179.9 180.0
C5 C6 O6 N1 180.7 179.8
O6 C6 N1 C2 179.8 180.3
O6 C6 N1 HN1 359.8 359.7
N1 C6 C5 C4 0.6 359.8
C5 C6 N1 O6 179.4 180.2
C2 N1 C6 HN1 180.0 180.6
C6 N1 C2 N2 180.9 179.7
C6 N1 C2 N3 0.3 359.4
C6 N1 C2 HN1 180.0 179.4
N2 C2 N1 N3 180.6 180.3
N1 C2 N2 HN21 0.0 179.7
N1 C2 N2 HN22 180.0 359.4
N1 C2 N3 C4 0.4 0.3
C6 N1 HN1 C2 180.0 180.6
HN1 N1 C2 N2 0.9 0.3
HN1 N1 C2 N3 180.3 180.0
N2 C2 N1 HN1 0.9 0.3
N1 C2 N2 N3 179.4 179.7
N2 C2 N3 C4 179.8 180.0
HN21 N2 C2 HN22 180.0 180.3
N9 C4 N3 C2 180.4 180.0
C5 C4 N3 C2 359.4 360.0
N3 C2 N1 HN1 180.3 180.0
N1 C2 N3 N2 180.6 180.3
N3 C2 N2 HN21 180.6 0.0
N3 C2 N2 HN22 0.6 179.7
HN21 N2 C2 N3 180.6 0.0
C2 N2 HN21 HN22 180.0 179.7
HN22 N2 C2 N3 0.6 179.7
C2 N2 HN22 HN21 180.0 180.3
N9 C4 N3 C5 181.0 180.0
O3' PC O1C O2C 236.1 240.0
O3' PC O1C O3C 103.3 119.9
O2C PC O1C O3C 227.2 240.0
O1C PC O2C H2C 50.8 180.0
O1C PC O3C PD 218.3 320.0
O3' PC O2C O1C 131.8 120.0
O3' PC O2C O3C 253.6 240.1
O1C PC O2C O3C 121.8 120.1
O2C PC O3C PD 349.2 80.0
O3' PC O3C O1C 239.6 240.0
O3' PC O3C O2C 108.7 120.0
O1C PC O3C O2C 229.1 239.9
O3C PC O2C H2C 289.0 60.0
PC O3C PD O1D 312.3 320.0
PC O3C PD O2D 189.5 80.0
PC O3C PD O3D 85.1 200.0
H2C O2C PC O3C 289.0 60.0
O1D PD O3C O2D 122.8 240.0
O1D PD O3C O3D 227.2 120.0
O2D PD O3C O3D 104.4 240.0
O3C PD O2D H2D 81.9 59.9
O3C PD O3D H3D 8.5 180.0
O3C PD O1D O2D 248.2 120.0
O3C PD O1D O3D 131.8 240.0
O2D PD O1D O3D 243.6 120.0
O1D PD O2D H2D 327.0 180.0
O1D PD O3D H3D 135.9 60.0
O3C PD O2D O1D 114.9 240.0
O3C PD O2D O3D 241.7 120.0
O1D PD O2D O3D 126.8 240.0
O2D PD O3D H3D 262.4 300.0
O3C PD O3D O1D 232.6 120.0
O3C PD O3D O2D 106.1 240.0
O1D PD O3D O2D 233.5 120.0
O3D PD O2D H2D 200.2 300.0
H2D O2D PD O3D 200.2 300.0