Atom Nomenclature for G4H

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for G4H

Atom Name (V3) Atom Name (V2)
CAR C1
CAS C2
CAT C3
CAU C4
CAV C5
CBJ C6
CBM C7
CBN C8
CBS C9
CBQ C10
OAN O1
NBT N1
CBR C11
CBO C12
CBP C13
NBK N2
CBL C14
CBI C15
CBH C16
CBG C17
CBD C18
CBE C19
CBF C20
CBC C21
NBB N3
CBA C22
CAZ C23
CAW C24
CAX C25
CAY C26
NAQ N4
CAL C27
CAH C28
CAI C29
OAD O2
NAJ N5
CAO C30
CAK C31
CAE C32
CAF C33
CAG C34
NAC N6
CAB C35
OAP O3
CAA C36
CAM C37
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H7 H7
H8 H8
H10 H10
H11 H11
H12 H12
H13 H13
H14 H14
H15 H15
H17 H17
H18 H18
H19 H19
H20 H20
H21 H21
H22 H22
H23 H23
H24 H24
H25 H25
H26 H26
H27 H27
H28 H28
H29 H29
H30 H30
H31 H31
H32 H32
H33 H33
H34 H34
H35 H35
H36 H36
H37 H37
H16 H16