PDB Chemical Component G48
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for G48
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| OP1 |
P |
1.462 |
1.480 |
| P |
O5' |
1.586 |
1.610 |
| P |
OP3 |
1.476 |
1.610 |
| C5' |
O5' |
1.411 |
1.429 |
| C5' |
C4' |
1.498 |
1.530 |
| C4' |
O4' |
1.446 |
1.437 |
| C4' |
C3' |
1.515 |
1.541 |
| O4' |
C1' |
1.419 |
1.443 |
| O3' |
C3' |
1.407 |
1.429 |
| C3' |
C2' |
1.516 |
1.548 |
| C1' |
C2' |
1.525 |
1.550 |
| C1' |
N9 |
1.457 |
1.465 |
| O2' |
C2' |
1.419 |
1.429 |
| O2' |
CA' |
1.424 |
1.429 |
| CD' |
OC' |
1.449 |
1.429 |
| C8 |
N9 |
1.382 |
1.365 |
| C8 |
N7 |
1.304 |
1.301 |
| CB' |
OC' |
1.456 |
1.429 |
| CB' |
CA' |
1.506 |
1.530 |
| N9 |
C4 |
1.360 |
1.369 |
| N7 |
C5 |
1.397 |
1.355 |
| C4 |
C5 |
1.376 |
1.400 |
| C4 |
N3 |
1.349 |
1.338 |
| C5 |
C6 |
1.444 |
1.414 |
| N3 |
C2 |
1.315 |
1.314 |
| C6 |
O6 |
1.233 |
1.220 |
| C6 |
N1 |
1.390 |
1.352 |
| C2 |
N1 |
1.377 |
1.363 |
| C2 |
N2 |
1.337 |
1.372 |
| P |
OP2 |
1.603 |
1.610 |
| OP3 |
HOP3 |
0.950 |
0.967 |
| C5' |
H5' |
1.100 |
1.090 |
| C5' |
H5'' |
1.099 |
1.090 |
| C4' |
H4' |
1.100 |
1.090 |
| C3' |
H3' |
1.100 |
1.090 |
| O3' |
HO3' |
0.950 |
0.966 |
| C2' |
H2' |
1.100 |
1.089 |
| C1' |
H1' |
1.100 |
1.090 |
| C8 |
H8 |
1.080 |
1.080 |
| N1 |
H1 |
1.000 |
0.970 |
| N2 |
H21 |
1.000 |
0.970 |
| N2 |
H22 |
1.000 |
0.970 |
| CA' |
HCA2 |
1.100 |
1.090 |
| CA' |
HCA1 |
1.100 |
1.091 |
| CB' |
HCB1 |
1.100 |
1.090 |
| CB' |
HCB2 |
1.100 |
1.090 |
| CD' |
HCD1 |
1.100 |
1.090 |
| CD' |
HCD2 |
1.099 |
1.090 |
| CD' |
HCD3 |
1.100 |
1.090 |
| OP2 |
HOP2 |
0.950 |
0.968 |
Bond Angles for G48
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| OP1 |
P |
O5' |
111.5 |
109.5 |
| OP1 |
P |
OP3 |
118.9 |
109.4 |
| OP1 |
P |
OP2 |
103.4 |
109.5 |
| OP3 |
P |
O5' |
108.1 |
109.5 |
| O5' |
P |
OP2 |
100.7 |
109.5 |
| OP3 |
P |
OP2 |
112.7 |
109.5 |
| P |
OP3 |
HOP3 |
109.5 |
113.9 |
| C5' |
C4' |
O4' |
110.1 |
109.9 |
| C5' |
C4' |
C3' |
116.5 |
109.9 |
| C4' |
C5' |
H5' |
109.2 |
109.5 |
| C4' |
C5' |
H5'' |
109.3 |
109.5 |
| C5' |
C4' |
H4' |
108.7 |
109.9 |
| O4' |
C4' |
C3' |
103.4 |
107.3 |
| C4' |
O4' |
C1' |
109.7 |
107.0 |
| O4' |
C4' |
H4' |
109.4 |
109.9 |
| C4' |
C3' |
C2' |
101.7 |
104.2 |
| C3' |
C4' |
H4' |
108.5 |
110.0 |
| C4' |
C3' |
H3' |
108.9 |
110.5 |
| O4' |
C1' |
C2' |
106.8 |
103.5 |
| O4' |
C1' |
N9 |
108.1 |
110.6 |
| O4' |
C1' |
H1' |
111.9 |
110.6 |
| O3' |
C3' |
C2' |
113.4 |
110.5 |
| O3' |
C3' |
H3' |
110.5 |
110.5 |
| C2' |
C3' |
H3' |
108.9 |
110.5 |
| C3' |
C2' |
H2' |
111.0 |
110.9 |
| C1' |
C2' |
H2' |
110.9 |
110.9 |
| C1' |
N9 |
C4 |
125.2 |
126.3 |
| N9 |
C1' |
H1' |
111.3 |
110.6 |
| O2' |
C2' |
H2' |
112.5 |
110.8 |
| O2' |
CA' |
HCA2 |
109.2 |
109.5 |
| O2' |
CA' |
HCA1 |
109.2 |
109.5 |
| C8 |
N9 |
C4 |
106.8 |
107.5 |
| C8 |
N7 |
C5 |
104.1 |
109.3 |
| N7 |
C8 |
H8 |
123.6 |
125.1 |
| OC' |
CB' |
HCB1 |
109.0 |
109.4 |
| OC' |
CB' |
HCB2 |
109.0 |
109.4 |
| CB' |
CA' |
HCA2 |
109.3 |
109.5 |
| CB' |
CA' |
HCA1 |
109.3 |
109.4 |
| N9 |
C4 |
C5 |
105.6 |
106.1 |
| N9 |
C4 |
N3 |
125.5 |
134.2 |
| N7 |
C5 |
C6 |
131.2 |
134.1 |
| C5 |
C6 |
O6 |
129.3 |
120.8 |
| C5 |
C6 |
N1 |
111.6 |
118.4 |
| O6 |
C6 |
N1 |
119.2 |
120.8 |
| C6 |
N1 |
H1 |
117.5 |
119.8 |
| C2 |
N1 |
H1 |
117.5 |
119.9 |
| C2 |
N2 |
H21 |
120.0 |
120.0 |
| C2 |
N2 |
H22 |
120.0 |
120.0 |
| P |
OP2 |
HOP2 |
109.5 |
114.0 |
| H5' |
C5' |
H5'' |
109.5 |
109.5 |
| H21 |
N2 |
H22 |
120.0 |
120.0 |
| HCA2 |
CA' |
HCA1 |
109.5 |
109.5 |
| HCB1 |
CB' |
HCB2 |
109.5 |
109.5 |
| HCD1 |
CD' |
HCD2 |
109.5 |
109.4 |
| HCD1 |
CD' |
HCD3 |
109.5 |
109.5 |
| HCD2 |
CD' |
HCD3 |
109.5 |
109.4 |
Torsion Angles for G48
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| OP3 |
P |
OP1 |
O5' |
233.3 |
240.0 |
| O5' |
P |
OP1 |
OP2 |
252.6 |
240.0 |
| OP3 |
P |
OP1 |
OP2 |
125.8 |
120.0 |
| OP1 |
P |
OP3 |
HOP3 |
360.0 |
180.0 |
| OP1 |
P |
OP2 |
HOP2 |
0.0 |
60.0 |
| OP1 |
P |
O5' |
OP3 |
227.6 |
240.0 |
| OP1 |
P |
O5' |
OP2 |
109.2 |
120.0 |
| OP3 |
P |
O5' |
OP2 |
241.6 |
240.0 |
| O5' |
P |
OP3 |
HOP3 |
231.7 |
59.9 |
| O5' |
P |
OP2 |
HOP2 |
115.4 |
180.0 |
| OP1 |
P |
OP3 |
O5' |
128.3 |
120.0 |
| OP1 |
P |
OP3 |
OP2 |
238.8 |
240.0 |
| O5' |
P |
OP3 |
OP2 |
110.4 |
120.0 |
| OP3 |
P |
OP2 |
HOP2 |
230.4 |
300.0 |
| C5' |
O5' |
P |
OP2 |
303.5 |
185.0 |
| O4' |
C4' |
C5' |
C3' |
242.8 |
242.2 |
| C5' |
C4' |
O4' |
C1' |
147.0 |
145.9 |
| O4' |
C4' |
C5' |
H4' |
119.8 |
121.0 |
| C5' |
C4' |
C3' |
C2' |
200.1 |
238.6 |
| C3' |
C4' |
C5' |
H4' |
237.1 |
238.8 |
| C5' |
C4' |
C3' |
H3' |
315.0 |
357.2 |
| H5' |
C5' |
C4' |
H5'' |
119.7 |
120.0 |
| C5' |
C4' |
O4' |
C3' |
125.1 |
119.4 |
| O4' |
C4' |
C5' |
H5' |
167.0 |
306.5 |
| O4' |
C4' |
C5' |
H5'' |
47.3 |
186.5 |
| C5' |
C4' |
O4' |
H4' |
240.6 |
239.0 |
| O4' |
C4' |
C3' |
C2' |
321.0 |
358.0 |
| C3' |
C4' |
O4' |
H4' |
115.5 |
119.6 |
| O4' |
C4' |
C3' |
H3' |
75.9 |
116.6 |
| C4' |
O4' |
C1' |
C2' |
4.2 |
319.9 |
| C4' |
O4' |
C1' |
N9 |
247.9 |
201.4 |
| C4' |
O4' |
C1' |
H1' |
125.0 |
78.4 |
| C5' |
C4' |
C3' |
O4' |
239.1 |
240.6 |
| C3' |
C4' |
C5' |
H5' |
284.3 |
64.3 |
| C3' |
C4' |
C5' |
H5'' |
164.5 |
304.3 |
| C5' |
C4' |
C3' |
H4' |
123.1 |
121.1 |
| C3' |
C4' |
O4' |
C1' |
21.9 |
26.5 |
| O4' |
C4' |
C3' |
H4' |
243.9 |
240.5 |
| O3' |
C3' |
C4' |
C2' |
238.1 |
241.3 |
| O3' |
C3' |
C4' |
H3' |
123.2 |
122.6 |
| C2' |
C3' |
C4' |
H3' |
245.1 |
241.3 |
| C4' |
C3' |
C2' |
H2' |
157.8 |
97.3 |
| C1' |
O4' |
C4' |
C3' |
21.9 |
26.5 |
| C1' |
O4' |
C4' |
H4' |
266.4 |
266.9 |
| O4' |
C1' |
C2' |
H2' |
214.2 |
278.8 |
| O4' |
C1' |
N9 |
C4 |
198.5 |
203.5 |
| N9 |
C1' |
O4' |
H1' |
122.9 |
123.0 |
| C4' |
C3' |
O3' |
C2' |
115.1 |
114.8 |
| O3' |
C3' |
C4' |
H4' |
315.2 |
358.8 |
| C4' |
C3' |
O3' |
H3' |
237.7 |
237.4 |
| C2' |
C3' |
O3' |
H3' |
122.6 |
122.6 |
| O3' |
C3' |
C2' |
H2' |
279.5 |
216.0 |
| C2' |
C3' |
C4' |
H4' |
77.1 |
117.5 |
| C4' |
C3' |
C2' |
H3' |
114.9 |
118.7 |
| O4' |
C1' |
C2' |
C3' |
331.7 |
37.0 |
| O3' |
C3' |
C2' |
H3' |
236.6 |
237.3 |
| C1' |
C2' |
C3' |
H2' |
242.6 |
241.8 |
| O2' |
C2' |
C3' |
H2' |
125.4 |
123.6 |
| O4' |
C1' |
C2' |
N9 |
243.8 |
241.5 |
| O4' |
C1' |
C2' |
H1' |
121.8 |
118.5 |
| C1' |
C2' |
C3' |
H3' |
285.5 |
220.5 |
| C3' |
C2' |
C1' |
H2' |
117.5 |
118.2 |
| O2' |
C2' |
C1' |
H2' |
234.2 |
236.4 |
| O4' |
C1' |
N9 |
C2' |
115.3 |
114.1 |
| O4' |
C1' |
N9 |
H1' |
236.7 |
237.0 |
| N9 |
C1' |
C2' |
H2' |
330.4 |
37.4 |
| C8 |
N9 |
C1' |
C4 |
181.5 |
180.3 |
| C1' |
N9 |
C4 |
C5 |
181.1 |
179.8 |
| C1' |
N9 |
C4 |
N3 |
359.6 |
0.8 |
| O4' |
C1' |
C2' |
O2' |
88.4 |
155.2 |
| O2' |
C2' |
C3' |
H3' |
168.3 |
102.2 |
| C3' |
C2' |
O2' |
H2' |
235.5 |
236.3 |
| C1' |
C2' |
O2' |
H2' |
124.9 |
123.6 |
| CA' |
O2' |
C2' |
H2' |
305.8 |
32.2 |
| CB' |
CA' |
O2' |
HCA2 |
239.9 |
240.0 |
| CB' |
CA' |
O2' |
HCA1 |
120.1 |
119.9 |
| HCA2 |
CA' |
O2' |
HCA1 |
240.3 |
240.0 |
| CD' |
OC' |
CB' |
HCB1 |
288.7 |
60.0 |
| CD' |
OC' |
CB' |
HCB2 |
48.1 |
300.0 |
| C1' |
N9 |
C8 |
C4 |
178.7 |
179.7 |
| C8 |
N9 |
C1' |
H1' |
143.3 |
146.8 |
| C8 |
N9 |
C4 |
C5 |
359.9 |
359.6 |
| C8 |
N9 |
C4 |
N3 |
178.3 |
180.5 |
| N7 |
C8 |
N9 |
C4 |
359.9 |
0.3 |
| C8 |
N7 |
C5 |
C6 |
180.6 |
180.1 |
| OC' |
CB' |
CA' |
HCA2 |
179.6 |
305.0 |
| OC' |
CB' |
CA' |
HCA1 |
59.9 |
185.0 |
| HCB1 |
CB' |
OC' |
HCB2 |
240.6 |
120.0 |
| O2' |
CA' |
CB' |
HCA2 |
120.1 |
120.0 |
| O2' |
CA' |
CB' |
HCA1 |
239.9 |
240.0 |
| HCA2 |
CA' |
CB' |
HCA1 |
119.8 |
120.0 |
| C4 |
N9 |
C1' |
H1' |
321.8 |
326.5 |
| C5 |
N7 |
C8 |
H8 |
180.2 |
180.0 |
| N9 |
C4 |
C5 |
N7 |
0.3 |
0.5 |
| N7 |
C5 |
C6 |
O6 |
357.6 |
359.9 |
| N7 |
C5 |
C6 |
N1 |
177.5 |
179.9 |
| N9 |
C4 |
C5 |
N3 |
178.4 |
180.8 |
| N9 |
C4 |
N3 |
C5 |
181.9 |
178.9 |
| N9 |
C4 |
C5 |
C6 |
179.5 |
180.1 |
| O6 |
C6 |
C5 |
N1 |
180.2 |
180.0 |
| C5 |
C6 |
N1 |
H1 |
179.9 |
180.0 |
| N9 |
C4 |
N3 |
C2 |
183.1 |
179.5 |
| N3 |
C2 |
N1 |
H1 |
182.5 |
179.9 |
| N3 |
C2 |
N2 |
H21 |
360.0 |
180.1 |
| N3 |
C2 |
N2 |
H22 |
180.0 |
0.0 |
| C5 |
C6 |
O6 |
N1 |
179.8 |
180.0 |
| O6 |
C6 |
N1 |
H1 |
359.8 |
0.0 |
| C5 |
C6 |
N1 |
O6 |
180.1 |
180.0 |
| C2 |
N1 |
C6 |
H1 |
180.0 |
180.0 |
| C6 |
N1 |
C2 |
H1 |
180.0 |
180.0 |
| N2 |
C2 |
N1 |
H1 |
3.7 |
360.0 |
| H21 |
N2 |
C2 |
H22 |
180.0 |
180.0 |
| OP1 |
P |
OP2 |
O5' |
244.6 |
240.0 |
| OP1 |
P |
OP2 |
OP3 |
129.6 |
120.0 |
| OP3 |
P |
OP2 |
O5' |
115.0 |
120.0 |
| OP2 |
P |
OP3 |
HOP3 |
121.2 |
300.0 |
| HOP3 |
OP3 |
P |
O5' |
231.7 |
59.9 |
| HOP3 |
OP3 |
P |
OP2 |
121.2 |
300.0 |
| H5' |
C5' |
C4' |
O4' |
167.0 |
306.5 |
| H5' |
C5' |
C4' |
C3' |
284.3 |
64.3 |
| C4' |
C5' |
H5' |
H5'' |
240.4 |
240.0 |
| H5' |
C5' |
C4' |
H4' |
47.2 |
185.5 |
| H5'' |
C5' |
C4' |
O4' |
47.3 |
186.5 |
| H5'' |
C5' |
C4' |
C3' |
164.5 |
304.3 |
| C4' |
C5' |
H5'' |
H5' |
119.6 |
120.0 |
| H5'' |
C5' |
C4' |
H4' |
287.5 |
65.4 |
| C5' |
C4' |
H4' |
O4' |
120.2 |
121.0 |
| C5' |
C4' |
H4' |
C3' |
232.4 |
238.9 |
| H4' |
C4' |
C5' |
H5' |
47.2 |
185.5 |
| H4' |
C4' |
C5' |
H5'' |
287.5 |
65.4 |
| O4' |
C4' |
H4' |
C3' |
112.1 |
117.9 |
| H4' |
C4' |
O4' |
C1' |
266.4 |
266.9 |
| H4' |
C4' |
C3' |
C2' |
77.1 |
117.5 |
| H4' |
C4' |
C3' |
H3' |
192.0 |
236.1 |
| C4' |
C3' |
H3' |
C2' |
249.9 |
245.2 |
| H3' |
C3' |
C4' |
H4' |
192.0 |
236.1 |
| O3' |
C3' |
H3' |
C2' |
125.2 |
122.6 |
| H3' |
C3' |
C2' |
H2' |
42.9 |
338.6 |
| HO3' |
O3' |
C3' |
C2' |
64.9 |
183.8 |
| HO3' |
O3' |
C3' |
H3' |
302.3 |
61.1 |
| H2' |
C2' |
C3' |
H3' |
42.9 |
338.6 |
| O4' |
C1' |
H1' |
C2' |
241.3 |
245.9 |
| O4' |
C1' |
H1' |
N9 |
121.1 |
123.0 |
| H1' |
C1' |
C2' |
H2' |
92.5 |
160.3 |
| H1' |
C1' |
N9 |
C4 |
321.8 |
326.5 |
| H8 |
C8 |
N9 |
C4 |
179.9 |
180.3 |
| H8 |
C8 |
N7 |
C5 |
180.2 |
180.0 |
| C2 |
N2 |
H21 |
H22 |
180.0 |
180.0 |
| C2 |
N2 |
H22 |
H21 |
180.0 |
180.0 |
| O2' |
CA' |
HCA2 |
HCA1 |
119.6 |
120.0 |
| CB' |
CA' |
HCA2 |
HCA1 |
240.4 |
240.0 |
| O2' |
CA' |
HCA1 |
HCA2 |
240.4 |
240.0 |
| CB' |
CA' |
HCA1 |
HCA2 |
119.6 |
120.0 |
| OC' |
CB' |
HCB1 |
HCB2 |
119.1 |
240.0 |
| HCB1 |
CB' |
CA' |
HCA2 |
59.4 |
64.9 |
| HCB1 |
CB' |
CA' |
HCA1 |
299.6 |
304.9 |
| OC' |
CB' |
HCB2 |
HCB1 |
240.9 |
120.0 |
| HCB2 |
CB' |
CA' |
HCA2 |
300.0 |
185.0 |
| HCB2 |
CB' |
CA' |
HCA1 |
180.2 |
65.0 |
| HCD2 |
CD' |
HCD1 |
HCD3 |
120.0 |
120.0 |
| HCD1 |
CD' |
HCD2 |
HCD3 |
240.0 |
240.0 |
| HCD1 |
CD' |
HCD3 |
HCD2 |
120.0 |
120.0 |