PDB Chemical Component G47

Ideal Model

Chemical Description

Name N2-ETHANETHIOL-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE
Formula C12 H18 N5 O7 P S
Formal charge 0
Molecular weight 407.339 g/mol
Component type DNA LINKING
Nonstandard Parent Id DG

Chemical features

Atom count 44
Chiral atom count 3
Chiral atoms C4' C3' C1'
Observed leaving atoms O3P
Bond count 46
Aromatic bond count 5

Chemical Identifiers

Systematic name (ACDLabs) 2'-deoxy-N-(2-sulfanylethyl)guanosine 5'-(dihydrogen phosphate)
Systematic name (OpenEye OEToolkits) [(2R,3S,5R)-3-hydroxy-5-[6-oxo-2-(2-sulfanylethylamino)-1H-purin-9-yl]oxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) O[C@H]1C[C@@H](O[C@@H]1CO[P](O)(O)=O)n2cnc3C(=O)NC(=Nc23)NCCS
SMILES (CACTVS) O[CH]1C[CH](O[CH]1CO[P](O)(O)=O)n2cnc3C(=O)NC(=Nc23)NCCS
Stereo SMILES (OpenEye) c1nc2c(n1[C@H]3C[C@@H]([C@H](O3)COP(=O)(O)O)O)N=C(NC2=O)NCCS
InChI descriptor InChI=1S/C12H18N5O7PS/c18-6-3-8(24-7(6)4-23-25(20,21)22)17-5-14-9-10(17)15-12(13-1-2-26)16-11(9)19/h5-8,18,26H,1-4H2,(H2,20,21,22)(H2,13,15,16,19)/t6-,7+,8+/m0/s1
InChIKey descriptor BYDQPYVCNHFUFE-XLPZGREQSA-N

Status Information

Last modified 2011-06-04
Created 1999-10-14
Release status REL
Model PDB code 1CW9
Processing site RCSB