PDB Chemical Component G47

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for G47

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
P O1P 1.490 1.617
P O2P 1.468 1.501
P O3P 1.598 1.617
P O5' 1.592 1.619
O1P H1P 0.950 0.981
O3P H3P 0.949 0.981
O5' C5' 1.424 1.417
C5' C4' 1.511 1.523
C5' H5'1 1.115 1.090
C5' H5'2 1.115 1.091
C4' O4' 1.451 1.443
C4' C3' 1.525 1.525
C4' H4' 1.115 1.095
O4' C1' 1.434 1.439
C3' O3' 1.438 1.425
C3' C2' 1.527 1.512
C3' H3' 1.115 1.093
O3' HA 0.950 0.969
C2' C1' 1.520 1.522
C2' H2'1 1.115 1.097
C2' H2'2 1.115 1.094
C1' N9 1.459 1.459
C1' H1' 1.115 1.095
N9 C8 1.372 1.375
N9 C4 1.376 1.367
C8 N7 1.314 1.319
C8 H8 1.103 1.082
N7 C5 1.387 1.363
C5 C6 1.429 1.437
C5 C4 1.377 1.374
C6 O6 1.244 1.224
C6 N1 1.381 1.402
N1 C2 1.373 1.415
N1 H1 1.020 1.016
C2 N2 1.313 1.370
C2 N3 1.321 1.316
N2 C6A 1.451 1.434
N2 H2 1.019 0.989
N3 C4 1.337 1.352
C6A C7A 1.479 1.523
C6A H6A1 1.115 1.095
C6A H6A2 1.115 1.095
C7A SG 1.787 1.819
C7A H7A1 1.115 1.094
C7A H7A2 1.115 1.095
HS1 SG 1.300 1.339

Bond Angles for G47

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O1P P O2P 120.4 115.3
O1P P O3P 108.0 103.3
O1P P O5' 110.0 103.7
P O1P H1P 120.4 118.9
O2P P O3P 110.0 115.0
O2P P O5' 106.5 115.0
O3P P O5' 100.1 102.9
P O3P H3P 108.0 118.9
P O5' C5' 120.6 118.5
O5' C5' C4' 110.9 108.7
O5' C5' H5'1 111.7 109.2
O5' C5' H5'2 111.7 109.2
C4' C5' H5'1 111.7 110.1
C4' C5' H5'2 111.7 110.1
C5' C4' O4' 111.4 108.0
C5' C4' C3' 115.1 112.7
C5' C4' H4' 108.1 109.4
H5'1 C5' H5'2 98.7 109.6
O4' C4' C3' 105.9 106.8
O4' C4' H4' 108.1 107.7
C4' O4' C1' 110.2 108.7
C3' C4' H4' 108.1 112.0
C4' C3' O3' 107.6 109.6
C4' C3' C2' 103.1 103.2
C4' C3' H3' 111.5 114.0
O4' C1' C2' 104.1 106.7
O4' C1' N9 106.3 110.0
O4' C1' H1' 110.7 108.1
O3' C3' C2' 111.4 108.4
O3' C3' H3' 111.5 107.8
C3' O3' HA 107.6 106.6
C2' C3' H3' 111.4 113.7
C3' C2' C1' 102.1 101.6
C3' C2' H2'1 115.0 110.0
C3' C2' H2'2 115.0 114.2
C1' C2' H2'1 115.0 110.5
C1' C2' H2'2 115.0 111.7
C2' C1' N9 114.2 114.3
C2' C1' H1' 110.6 111.7
H2'1 C2' H2'2 95.5 108.7
N9 C1' H1' 110.7 105.9
C1' N9 C8 125.8 126.1
C1' N9 C4 127.8 127.3
C8 N9 C4 106.4 106.6
N9 C8 N7 112.8 112.5
N9 C8 H8 123.6 122.0
N9 C4 C5 105.6 104.9
N9 C4 N3 126.0 126.0
N7 C8 H8 123.6 125.5
C8 N7 C5 104.4 103.9
N7 C5 C6 130.3 128.7
N7 C5 C4 110.7 112.1
C6 C5 C4 119.0 119.2
C5 C6 O6 129.0 123.8
C5 C6 N1 111.5 110.8
C5 C4 N3 128.3 129.1
O6 C6 N1 119.5 125.4
C6 N1 C2 124.3 125.3
C6 N1 H1 117.8 117.4
C2 N1 H1 117.8 117.4
N1 C2 N2 115.6 115.4
N1 C2 N3 124.8 122.6
N2 C2 N3 119.5 122.0
C2 N2 C6A 124.1 120.4
C2 N2 H2 118.0 116.6
C2 N3 C4 111.9 113.0
C6A N2 H2 117.9 123.0
N2 C6A C7A 108.4 113.0
N2 C6A H6A1 112.6 106.6
N2 C6A H6A2 112.6 108.0
C7A C6A H6A1 112.6 109.3
C7A C6A H6A2 112.6 112.0
C6A C7A SG 113.2 112.2
C6A C7A H7A1 110.9 110.9
C6A C7A H7A2 110.9 109.5
H6A1 C6A H6A2 97.8 107.7
SG C7A H7A1 110.9 108.5
SG C7A H7A2 110.8 107.6
H7A1 C7A H7A2 99.4 108.0

Torsion Angles for G47

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O2P P O1P O3P 127.4 126.3
O2P P O1P O5' 235.7 233.4
O3P P O1P O5' 108.3 107.1
O1P P O3P H3P 180.0 78.5
O1P P O5' C5' 50.4 53.2
O1P P O2P O3P 233.5 239.9
O1P P O2P O5' 125.9 120.6
O2P P O1P H1P 180.1 48.8
O3P P O2P O5' 252.4 240.7
O2P P O3P H3P 46.8 312.0
O2P P O5' C5' 182.4 180.0
O1P P O3P O2P 133.2 126.5
O1P P O3P O5' 245.0 252.3
O3P P O1P H1P 52.7 282.5
O2P P O3P O5' 111.8 125.8
O3P P O5' C5' 296.9 305.8
O1P P O5' O2P 228.0 233.2
O1P P O5' O3P 113.5 107.4
O5' P O1P H1P 304.4 175.4
O2P P O5' O3P 245.5 234.2
O5' P O3P H3P 295.0 186.1
P O5' C5' C4' 142.8 180.0
P O5' C5' H5'1 17.5 300.1
P O5' C5' H5'2 268.0 59.9
H1P O1P P O2P 180.1 48.8
H1P O1P P O3P 52.7 282.5
H1P O1P P O5' 304.4 175.4
H3P O3P P O5' 295.0 186.1
C4' C5' O5' H5'1 125.3 239.9
C4' C5' O5' H5'2 234.8 120.1
O5' C5' C4' O4' 286.0 61.8
O5' C5' C4' C3' 46.6 179.5
O5' C5' C4' H4' 167.5 304.8
H5'1 C5' O5' H5'2 109.5 240.2
O5' C5' C4' H5'1 234.7 119.6
O5' C5' C4' H5'2 125.2 240.5
H5'1 C5' C4' H5'2 250.5 120.9
O4' C4' C5' C3' 239.4 242.3
O4' C4' C5' H4' 118.6 117.0
C5' C4' O4' C1' 128.0 116.0
C3' C4' C5' H4' 239.2 234.7
C5' C4' C3' O3' 139.8 152.1
C5' C4' C3' C2' 257.6 267.4
C5' C4' C3' H3' 17.2 31.2
O5' C5' H5'1 C4' 124.8 240.8
O5' C5' H5'1 H5'2 242.4 119.6
C4' C5' H5'1 H5'2 117.6 238.8
H5'1 C5' C4' O4' 51.3 302.2
H5'1 C5' C4' C3' 171.9 60.0
H5'1 C5' C4' H4' 292.7 185.3
O5' C5' H5'2 C4' 235.2 119.2
O5' C5' H5'2 H5'1 117.6 240.4
C4' C5' H5'2 H5'1 242.4 121.2
H5'2 C5' C4' O4' 160.8 181.3
H5'2 C5' C4' C3' 281.4 299.1
H5'2 C5' C4' H4' 42.2 64.3
O4' C4' C5' H5'1 51.3 302.2
O4' C4' C5' H5'2 160.8 181.3
C5' C4' O4' C3' 125.8 121.5
C5' C4' O4' H4' 241.4 242.0
C3' C4' O4' H4' 115.6 120.5
O4' C4' C3' O3' 263.3 270.6
O4' C4' C3' C2' 21.1 25.9
O4' C4' C3' H3' 140.8 149.7
C4' O4' C1' C2' 335.1 342.7
C4' O4' C1' N9 214.2 218.2
C4' O4' C1' H1' 94.1 103.1
C3' C4' C5' H5'1 171.9 60.0
C3' C4' C5' H5'2 281.4 299.1
C5' C4' C3' O4' 236.5 241.5
C5' C4' C3' H4' 120.8 123.8
O4' C4' C3' H4' 244.4 242.3
C3' C4' O4' C1' 2.2 354.5
O3' C3' C4' C2' 242.2 244.7
O3' C3' C4' H3' 122.5 120.9
C4' C3' O3' HA 180.0 46.6
C2' C3' C4' H3' 240.3 236.3
C4' C3' C2' C1' 324.8 325.2
C4' C3' C2' H2'1 199.6 82.2
C4' C3' C2' H2'2 90.1 204.8
H4' C4' C5' H5'1 292.7 185.3
H4' C4' C5' H5'2 42.2 64.3
C5' C4' H4' O4' 120.7 117.2
C5' C4' H4' C3' 234.9 234.3
O4' C4' H4' C3' 114.2 117.2
H4' C4' O4' C1' 246.6 234.0
H4' C4' C3' O3' 18.9 28.3
H4' C4' C3' C2' 136.8 143.6
H4' C4' C3' H3' 256.4 267.4
C1' O4' C4' C3' 2.2 354.5
C1' O4' C4' H4' 246.6 234.0
C3' C2' C1' O4' 37.0 32.7
O4' C1' C2' H2'1 162.3 276.0
O4' C1' C2' H2'2 271.8 154.9
C2' C1' O4' N9 120.9 124.5
C2' C1' O4' H1' 241.1 239.7
N9 C1' O4' H1' 120.2 115.2
O4' C1' N9 C8 59.7 33.5
O4' C1' N9 C4 242.1 213.5
O3' C3' C4' H4' 18.9 28.3
C4' C3' O3' C2' 112.3 111.9
C4' C3' O3' H3' 237.5 235.4
C2' C3' O3' H3' 125.2 123.5
O3' C3' C2' C1' 80.0 81.3
O3' C3' C2' H2'1 314.7 198.4
O3' C3' C2' H2'2 205.2 320.9
C2' C3' C4' H4' 136.8 143.6
C4' C3' C2' O3' 244.9 243.8
C4' C3' C2' H3' 119.7 123.9
O4' C1' C2' C3' 37.0 32.7
O3' C3' C2' H3' 234.8 240.1
C2' C3' O3' HA 67.7 294.7
C1' C2' C3' H2'1 125.3 243.0
C1' C2' C3' H2'2 234.8 120.4
C3' C2' C1' N9 152.5 154.5
C3' C2' C1' H1' 278.1 274.8
H2'1 C2' C3' H2'2 109.5 237.5
H3' C3' C4' H4' 256.4 267.4
C4' C3' H3' O3' 120.3 121.9
C4' C3' H3' C2' 245.4 242.1
O3' C3' H3' C2' 125.1 120.2
H3' C3' O3' HA 302.5 171.2
H3' C3' C2' C1' 205.2 201.2
H3' C3' C2' H2'1 79.9 318.3
H3' C3' C2' H2'2 330.4 80.8
HA O3' C3' C2' 67.7 294.7
HA O3' C3' H3' 302.5 171.2
O4' C1' C2' N9 244.6 238.2
O4' C1' C2' H1' 118.9 117.9
C1' C2' C3' H3' 205.2 201.2
C3' C2' C1' H2'1 234.7 116.7
C3' C2' C1' H2'2 125.2 237.8
H2'1 C2' C1' H2'2 250.5 121.1
N9 C1' C2' H1' 234.4 239.7
C2' C1' N9 C8 305.5 273.4
C2' C1' N9 C4 128.0 93.4
H2'1 C2' C3' H3' 79.9 318.3
C3' C2' H2'1 C1' 118.2 248.6
C3' C2' H2'1 H2'2 239.1 125.7
C1' C2' H2'1 H2'2 120.9 237.1
H2'1 C2' C1' N9 277.7 37.8
H2'1 C2' C1' H1' 43.3 158.1
H2'2 C2' C3' H3' 330.4 80.8
C3' C2' H2'2 C1' 241.8 114.6
C3' C2' H2'2 H2'1 120.9 236.7
C1' C2' H2'2 H2'1 239.1 122.1
H2'2 C2' C1' N9 27.2 276.7
H2'2 C2' C1' H1' 152.8 37.0
O4' C1' N9 C2' 114.2 120.0
O4' C1' N9 H1' 239.8 243.5
N9 C1' C2' H2'1 277.7 37.8
N9 C1' C2' H2'2 27.2 276.7
C2' C1' N9 H1' 125.6 123.5
C8 N9 C1' C4 177.6 180.0
C1' N9 C8 N7 183.0 180.0
C1' N9 C8 H8 3.0 360.0
C1' N9 C4 C5 176.6 180.0
C1' N9 C4 N3 356.5 360.0
O4' C1' H1' C2' 245.1 242.9
O4' C1' H1' N9 117.5 117.8
H1' C1' C2' H2'1 43.3 158.1
H1' C1' C2' H2'2 152.8 37.0
C2' C1' H1' N9 232.4 234.9
H1' C1' N9 C8 179.9 150.0
H1' C1' N9 C4 2.4 330.0
C8 N9 C1' H1' 179.9 150.0
C1' N9 C8 C4 182.0 180.0
C8 N9 C4 C5 358.6 360.0
C8 N9 C4 N3 178.5 180.0
N7 C8 N9 H8 180.0 180.0
N9 C8 N7 C5 359.9 0.0
C4 N9 C1' H1' 2.4 330.0
C1' N9 C4 C8 177.9 180.0
C4 N9 C8 N7 1.0 0.0
C4 N9 C8 H8 181.0 180.0
N7 C5 C4 N9 1.3 0.0
C6 C5 C4 N9 180.4 180.0
C5 C4 N9 N3 180.1 180.0
C2 N3 C4 N9 180.8 180.0
N7 C8 N9 C4 1.0 0.0
N9 C8 N7 H8 180.0 180.0
C8 N7 C5 C6 180.3 180.0
C8 N7 C5 C4 359.2 360.0
H8 C8 N9 C4 181.0 180.0
N9 C8 H8 N7 180.0 180.0
H8 C8 N7 C5 179.8 180.0
N9 C4 C5 N7 1.3 0.0
C5 N7 C8 H8 179.8 180.0
C6 C5 N7 C4 181.0 180.1
N7 C5 C6 O6 357.6 359.9
N7 C5 C6 N1 177.8 180.0
N7 C5 C4 N3 181.4 180.0
N9 C4 C5 C6 180.4 180.0
N7 C5 C6 C4 178.9 179.9
C6 C5 C4 N3 0.5 360.0
O6 C6 C5 N1 179.9 179.9
C5 C6 N1 C2 0.6 360.0
C5 C6 N1 H1 180.6 180.0
N9 C4 C5 N3 179.9 180.0
N7 C5 C4 C6 180.9 180.0
C4 C5 C6 O6 178.8 180.0
C4 C5 C6 N1 358.9 0.1
C2 N3 C4 C5 0.7 360.0
O6 C6 C5 C4 178.8 180.0
C5 C6 O6 N1 180.2 180.1
O6 C6 N1 C2 180.7 180.0
O6 C6 N1 H1 0.7 0.1
N1 C6 C5 C4 358.9 0.1
C5 C6 N1 O6 179.9 179.9
C2 N1 C6 H1 180.0 180.0
C6 N1 C2 N2 181.2 180.0
C6 N1 C2 N3 0.7 0.0
C6 N1 C2 H1 180.0 180.0
N2 C2 N1 N3 180.5 180.0
N1 C2 N2 C6A 185.2 180.0
N1 C2 N2 H2 5.2 360.0
N1 C2 N3 C4 358.7 0.0
C6 N1 H1 C2 180.0 180.0
H1 N1 C2 N2 1.2 360.0
H1 N1 C2 N3 180.7 180.0
N2 C2 N1 H1 1.2 360.0
N1 C2 N2 N3 179.5 180.0
N2 C2 N3 C4 178.2 180.0
C6A N2 C2 H2 180.0 180.0
C2 N2 C6A C7A 272.8 179.9
C2 N2 C6A H6A1 147.5 300.0
C2 N2 C6A H6A2 38.1 55.4
N9 C4 N3 C2 180.8 180.0
C5 C4 N3 C2 0.7 360.0
N3 C2 N1 H1 180.7 180.0
N1 C2 N3 N2 180.5 180.0
N3 C2 N2 C6A 5.7 0.0
N3 C2 N2 H2 185.6 180.0
C6A N2 C2 N3 5.7 0.0
C2 N2 C6A H2 180.0 180.0
C7A C6A N2 H6A1 125.3 239.9
C7A C6A N2 H6A2 234.7 124.4
N2 C6A C7A SG 255.0 298.5
N2 C6A C7A H7A1 129.7 60.0
N2 C6A C7A H7A2 20.2 179.1
H6A1 C6A N2 H6A2 109.5 244.5
H2 N2 C2 N3 185.6 180.0
C2 N2 H2 C6A 180.0 180.0
H2 N2 C6A C7A 92.8 359.9
H2 N2 C6A H6A1 327.5 120.0
H2 N2 C6A H6A2 218.1 235.5
N9 C4 N3 C5 180.1 180.0
C7A C6A N2 H2 92.8 359.9
N2 C6A C7A H6A1 234.7 118.5
N2 C6A C7A H6A2 125.3 237.8
H6A1 C6A C7A H6A2 250.5 119.3
SG C7A C6A H7A1 125.3 238.5
SG C7A C6A H7A2 234.7 119.4
H7A1 C7A C6A H7A2 109.4 240.9
H6A1 C6A N2 H2 327.5 120.0
N2 C6A H6A1 C7A 122.9 237.6
N2 C6A H6A1 H6A2 241.5 115.6
C7A C6A H6A1 H6A2 118.5 238.1
H6A1 C6A C7A SG 20.2 180.0
H6A1 C6A C7A H7A1 254.9 301.5
H6A1 C6A C7A H7A2 145.5 60.7
H6A2 C6A N2 H2 218.1 235.5
N2 C6A H6A2 C7A 237.1 125.0
N2 C6A H6A2 H6A1 118.5 245.3
C7A C6A H6A2 H6A1 241.5 120.3
H6A2 C6A C7A SG 129.7 60.7
H6A2 C6A C7A H7A1 4.4 182.2
H6A2 C6A C7A H7A2 255.0 301.3
SG C7A C6A H6A1 20.2 180.0
SG C7A C6A H6A2 129.7 60.7
C6A C7A SG H7A1 234.7 122.9
C6A C7A SG H7A2 125.3 239.5
H7A1 C7A SG H7A2 250.6 116.7
H7A1 C7A C6A H6A1 254.9 301.5
H7A1 C7A C6A H6A2 4.4 182.2
C6A C7A H7A1 SG 126.6 236.4
C6A C7A H7A1 H7A2 243.3 120.0
SG C7A H7A1 H7A2 116.7 243.6
H7A2 C7A C6A H6A1 145.5 60.7
H7A2 C7A C6A H6A2 255.0 301.3
C6A C7A H7A2 SG 233.4 122.2
C6A C7A H7A2 H7A1 116.7 239.1
SG C7A H7A2 H7A1 243.3 116.9