PDB Chemical Component G46

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for G46

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
P O1P 1.489 1.610
P S2P 1.886 2.120
P O3P 1.632 1.481
P O5' 1.595 1.610
O1P H1P 0.950 0.967
S2P HS 1.300 1.345
O5' C5' 1.451 1.429
C5' C4' 1.517 1.530
C5' H5'1 1.100 1.090
C5' H5'2 1.100 1.090
C4' O4' 1.460 1.438
C4' C3' 1.519 1.541
C4' H4' 1.100 1.090
O4' C1' 1.420 1.444
C3' O3' 1.424 1.429
C3' C2' 1.528 1.549
C3' H3' 1.099 1.089
O3' HA 0.949 0.967
C2' C1' 1.537 1.550
C2' O2' 1.427 1.428
C2' H2' 1.101 1.090
C1' N9 1.465 1.464
C1' H1' 1.100 1.090
O2' HB 0.950 0.968
N9 C8 1.372 1.364
N9 C4 1.386 1.369
C8 N7 1.305 1.301
C8 H8 1.080 1.080
N7 C5 1.393 1.355
C5 C6 1.438 1.415
C5 C4 1.377 1.399
C6 O6 1.239 1.219
C6 N1 1.375 1.352
N1 C2 1.376 1.363
N1 H1 1.000 0.969
C2 N2 1.346 1.372
C2 N3 1.324 1.315
N2 H2N1 1.000 0.970
N2 H2N2 1.000 0.970
N3 C4 1.354 1.338

Bond Angles for G46

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O1P P S2P 5.3 109.5
O1P P O3P 109.2 109.4
O1P P O5' 107.8 109.5
P O1P H1P 109.5 114.0
S2P P O3P 105.9 109.5
S2P P O5' 112.9 109.5
P S2P HS 102.0 103.0
O3P P O5' 104.0 109.4
P O5' C5' 121.7 123.0
O5' C5' C4' 110.4 109.5
O5' C5' H5'1 109.3 109.5
O5' C5' H5'2 109.3 109.4
C4' C5' H5'1 109.3 109.5
C4' C5' H5'2 109.2 109.4
C5' C4' O4' 111.1 109.8
C5' C4' C3' 115.7 109.9
C5' C4' H4' 108.9 109.9
H5'1 C5' H5'2 109.4 109.5
O4' C4' C3' 102.6 107.3
O4' C4' H4' 109.6 109.8
C4' O4' C1' 110.0 107.0
C3' C4' H4' 108.8 110.0
C4' C3' O3' 110.4 110.5
C4' C3' C2' 100.3 104.2
C4' C3' H3' 110.3 110.5
O4' C1' C2' 105.7 103.5
O4' C1' N9 108.4 110.6
O4' C1' H1' 110.6 110.6
O3' C3' C2' 113.6 110.5
O3' C3' H3' 111.6 110.5
C3' O3' HA 109.5 114.0
C2' C3' H3' 110.1 110.6
C3' C2' C1' 100.9 102.1
C3' C2' O2' 112.4 110.9
C3' C2' H2' 111.0 110.9
C1' C2' O2' 108.6 110.9
C1' C2' H2' 110.9 110.9
C2' C1' N9 113.2 110.6
C2' C1' H1' 108.9 110.6
O2' C2' H2' 112.5 110.8
C2' O2' HB 109.5 114.0
N9 C1' H1' 109.9 110.7
C1' N9 C8 127.1 126.3
C1' N9 C4 126.7 126.2
C8 N9 C4 106.2 107.5
N9 C8 N7 113.3 109.8
N9 C8 H8 123.4 125.0
N9 C4 C5 105.4 106.1
N9 C4 N3 125.8 134.2
N7 C8 H8 123.3 125.1
C8 N7 C5 104.4 109.3
N7 C5 C6 130.7 134.1
N7 C5 C4 110.7 107.3
C6 C5 C4 118.4 118.6
C5 C6 O6 128.6 120.9
C5 C6 N1 111.8 118.4
C5 C4 N3 128.5 119.7
O6 C6 N1 119.6 120.8
C6 N1 C2 125.3 120.3
C6 N1 H1 117.4 119.9
C2 N1 H1 117.4 119.8
N1 C2 N2 116.2 119.1
N1 C2 N3 124.0 121.8
N2 C2 N3 119.8 119.1
C2 N2 H2N1 120.0 120.0
C2 N2 H2N2 120.0 120.0
C2 N3 C4 112.0 121.2
H2N1 N2 H2N2 120.0 120.0

Torsion Angles for G46

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
S2P P O1P O3P 53.2 240.0
S2P P O1P O5' 165.6 120.0
O1P P S2P HS 231.9 60.0
O3P P O1P O5' 112.4 240.0
O1P P O5' C5' 54.3 185.0
O1P P S2P O3P 231.8 120.0
O1P P S2P O5' 345.1 240.0
S2P P O1P H1P 53.2 60.1
O3P P S2P O5' 113.2 120.0
S2P P O5' C5' 52.8 65.0
O1P P O3P S2P 4.4 240.0
O1P P O3P O5' 245.2 120.0
O3P P O1P H1P 0.0 180.1
S2P P O3P O5' 240.7 240.0
O3P P S2P HS 0.0 300.0
O3P P O5' C5' 298.4 305.0
O1P P O5' S2P 1.4 120.0
O1P P O5' O3P 115.8 240.0
O5' P O1P H1P 247.7 300.0
S2P P O5' O3P 114.4 120.0
O5' P S2P HS 246.8 180.0
P O5' C5' C4' 171.8 180.0
P O5' C5' H5'1 291.9 300.0
P O5' C5' H5'2 51.6 60.1
H1P O1P P S2P 53.2 60.1
H1P O1P P O3P 0.0 180.1
H1P O1P P O5' 247.7 300.0
HS S2P P O3P 0.0 300.0
HS S2P P O5' 246.8 180.0
C4' C5' O5' H5'1 239.9 239.9
C4' C5' O5' H5'2 120.1 119.9
O5' C5' C4' O4' 301.5 66.5
O5' C5' C4' C3' 57.8 184.3
O5' C5' C4' H4' 180.7 305.5
H5'1 C5' O5' H5'2 240.3 240.0
O5' C5' C4' H5'1 120.1 120.0
O5' C5' C4' H5'2 239.8 240.1
H5'1 C5' C4' H5'2 119.7 120.0
O4' C4' C5' C3' 243.6 242.2
O4' C4' C5' H4' 120.8 120.9
C5' C4' O4' C1' 149.6 145.9
C3' C4' C5' H4' 237.1 238.8
C5' C4' C3' O3' 76.7 119.9
C5' C4' C3' C2' 196.8 238.6
C5' C4' C3' H3' 312.9 357.4
O5' C5' H5'1 C4' 239.2 240.0
O5' C5' H5'1 H5'2 119.6 120.0
C4' C5' H5'1 H5'2 240.4 240.0
H5'1 C5' C4' O4' 181.3 306.5
H5'1 C5' C4' C3' 297.7 64.3
H5'1 C5' C4' H4' 60.6 185.5
O5' C5' H5'2 C4' 120.8 120.0
O5' C5' H5'2 H5'1 240.4 240.0
C4' C5' H5'2 H5'1 119.6 120.0
H5'2 C5' C4' O4' 61.6 186.4
H5'2 C5' C4' C3' 178.0 304.2
H5'2 C5' C4' H4' 300.9 65.5
O4' C4' C5' H5'1 181.3 306.5
O4' C4' C5' H5'2 61.6 186.4
C5' C4' O4' C3' 124.2 119.4
C5' C4' O4' H4' 239.7 239.0
C3' C4' O4' H4' 115.5 119.6
O4' C4' C3' O3' 197.8 239.3
O4' C4' C3' C2' 317.9 358.0
O4' C4' C3' H3' 73.9 116.8
C4' O4' C1' C2' 2.3 320.0
C4' O4' C1' N9 240.6 201.4
C4' O4' C1' H1' 120.0 78.4
C3' C4' C5' H5'1 297.7 64.3
C3' C4' C5' H5'2 178.0 304.2
C5' C4' C3' O4' 238.9 240.6
C5' C4' C3' H4' 122.9 121.2
O4' C4' C3' H4' 243.9 240.6
C3' C4' O4' C1' 25.4 26.5
O3' C3' C4' C2' 239.9 241.4
O3' C3' C4' H3' 123.8 122.6
C4' C3' O3' HA 180.0 180.0
C2' C3' C4' H3' 244.0 241.2
C4' C3' C2' C1' 42.8 339.1
C4' C3' C2' O2' 287.3 220.9
C4' C3' C2' H2' 160.3 97.3
H4' C4' C5' H5'1 60.6 185.5
H4' C4' C5' H5'2 300.9 65.5
C5' C4' H4' O4' 121.6 121.0
C5' C4' H4' C3' 233.1 238.8
O4' C4' H4' C3' 111.4 117.9
H4' C4' O4' C1' 269.9 266.9
H4' C4' C3' O3' 313.8 358.8
H4' C4' C3' C2' 74.0 117.4
H4' C4' C3' H3' 190.0 236.2
C1' O4' C4' C3' 25.4 26.5
C1' O4' C4' H4' 269.9 266.9
C3' C2' C1' O4' 331.4 37.0
O4' C1' C2' O2' 89.6 155.2
O4' C1' C2' H2' 213.8 278.8
C2' C1' O4' N9 121.7 118.5
C2' C1' O4' H1' 242.2 241.6
N9 C1' O4' H1' 120.6 123.0
O4' C1' N9 C8 12.5 23.6
O4' C1' N9 C4 191.1 203.2
O3' C3' C4' H4' 313.8 358.8
C4' C3' O3' C2' 111.7 114.7
C4' C3' O3' H3' 237.0 237.4
C2' C3' O3' H3' 125.3 122.7
O3' C3' C2' C1' 160.5 97.8
O3' C3' C2' O2' 45.1 339.6
O3' C3' C2' H2' 278.1 216.0
C2' C3' C4' H4' 74.0 117.4
C4' C3' C2' O3' 242.3 241.3
C4' C3' C2' H3' 116.2 118.7
O4' C1' C2' C3' 331.4 37.0
O3' C3' C2' H3' 233.9 237.4
C2' C3' O3' HA 68.3 65.3
C1' C2' C3' O2' 115.5 118.2
C1' C2' C3' H2' 242.5 241.8
C3' C2' C1' N9 89.9 155.5
C3' C2' C1' H1' 212.5 278.5
O2' C2' C3' H2' 127.0 123.6
C3' C2' O2' HB 180.0 298.6
H3' C3' C4' H4' 190.0 236.2
C4' C3' H3' O3' 123.1 122.6
C4' C3' H3' C2' 250.3 245.2
O3' C3' H3' C2' 127.2 122.6
H3' C3' O3' HA 303.0 302.6
H3' C3' C2' C1' 286.6 220.4
H3' C3' C2' O2' 171.2 102.2
H3' C3' C2' H2' 44.2 338.6
HA O3' C3' C2' 68.3 65.3
HA O3' C3' H3' 303.0 302.6
O4' C1' C2' N9 241.5 241.5
O4' C1' C2' H1' 118.9 118.5
C1' C2' C3' H3' 286.6 220.4
C3' C2' C1' O2' 241.7 241.8
C3' C2' C1' H2' 117.6 118.2
O2' C2' C1' H2' 235.9 236.4
C1' C2' O2' HB 69.3 185.8
N9 C1' C2' H1' 237.4 237.0
C2' C1' N9 C8 255.5 269.5
C2' C1' N9 C4 74.1 89.2
O2' C2' C3' H3' 171.2 102.2
C3' C2' O2' C1' 110.7 112.7
C3' C2' O2' H2' 233.8 236.4
C1' C2' O2' H2' 123.1 123.7
O2' C2' C1' N9 208.2 273.7
O2' C2' C1' H1' 330.8 36.7
H2' C2' C3' H3' 44.2 338.6
C3' C2' H2' C1' 248.7 247.3
C3' C2' H2' O2' 126.9 123.6
C1' C2' H2' O2' 238.2 236.3
H2' C2' C1' N9 332.3 37.3
H2' C2' C1' H1' 94.9 160.3
H2' C2' O2' HB 306.2 62.2
O4' C1' N9 C2' 116.9 114.1
O4' C1' N9 H1' 239.0 237.0
N9 C1' C2' O2' 208.2 273.7
N9 C1' C2' H2' 332.3 37.3
C2' C1' N9 H1' 122.1 122.9
C8 N9 C1' C4 181.4 180.3
C1' N9 C8 N7 178.6 180.0
C1' N9 C8 H8 358.6 360.0
C1' N9 C4 C5 181.9 179.9
C1' N9 C4 N3 356.0 0.8
O4' C1' H1' C2' 244.2 246.0
O4' C1' H1' N9 119.6 123.0
H1' C1' C2' O2' 330.8 36.7
H1' C1' C2' H2' 94.9 160.3
C2' C1' H1' N9 235.4 237.0
H1' C1' N9 C8 133.5 146.6
H1' C1' N9 C4 312.0 326.2
HB O2' C2' H2' 306.2 62.2
C8 N9 C1' H1' 133.5 146.6
C1' N9 C8 C4 178.8 179.7
C8 N9 C4 C5 0.8 359.6
C8 N9 C4 N3 174.9 180.5
N7 C8 N9 H8 180.0 180.0
N9 C8 N7 C5 359.6 360.0
C4 N9 C1' H1' 312.0 326.2
C1' N9 C4 C8 181.2 180.3
C4 N9 C8 N7 359.8 0.3
C4 N9 C8 H8 179.7 180.3
N7 C5 C4 N9 358.9 0.4
C6 C5 C4 N9 173.8 180.2
C5 C4 N9 N3 185.9 179.1
C2 N3 C4 N9 186.3 179.6
N7 C8 N9 C4 359.8 0.3
N9 C8 N7 H8 180.0 180.0
C8 N7 C5 C6 186.9 180.0
C8 N7 C5 C4 0.9 359.8
H8 C8 N9 C4 179.7 180.3
N9 C8 H8 N7 180.0 180.0
H8 C8 N7 C5 179.6 180.0
N9 C4 C5 N7 358.9 0.4
C5 N7 C8 H8 179.6 180.0
C6 C5 N7 C4 186.0 180.2
N7 C5 C6 O6 357.3 0.1
N7 C5 C6 N1 175.5 180.0
N7 C5 C4 N3 185.1 179.7
N9 C4 C5 C6 173.8 180.2
N7 C5 C6 C4 173.6 179.8
C6 C5 C4 N3 359.9 359.5
O6 C6 C5 N1 181.8 180.1
C5 C6 N1 C2 357.2 0.0
C5 C6 N1 H1 177.2 180.0
N9 C4 C5 N3 173.9 180.7
N7 C5 C4 C6 185.2 180.2
C4 C5 C6 O6 183.7 180.3
C4 C5 C6 N1 1.9 0.2
C2 N3 C4 C5 359.0 0.5
O6 C6 C5 C4 183.7 180.3
C5 C6 O6 N1 178.1 179.9
O6 C6 N1 C2 175.6 180.0
O6 C6 N1 H1 355.6 359.9
N1 C6 C5 C4 1.9 0.2
C5 C6 N1 O6 181.6 180.1
C2 N1 C6 H1 180.0 180.0
C6 N1 C2 N2 182.3 180.0
C6 N1 C2 N3 1.9 360.0
C6 N1 C2 H1 180.0 180.0
N2 C2 N1 N3 180.4 180.1
N1 C2 N2 H2N1 179.6 360.0
N1 C2 N2 H2N2 359.6 180.0
N1 C2 N3 C4 0.2 359.7
C6 N1 H1 C2 180.0 180.0
H1 N1 C2 N2 2.3 0.1
H1 N1 C2 N3 181.9 180.0
N2 C2 N1 H1 2.3 0.1
N1 C2 N2 N3 179.6 179.9
N2 C2 N3 C4 179.7 179.7
H2N1 N2 C2 H2N2 180.0 179.9
N9 C4 N3 C2 186.3 179.6
C5 C4 N3 C2 359.0 0.5
N3 C2 N1 H1 181.9 180.0
N1 C2 N3 N2 180.4 180.1
N3 C2 N2 H2N1 360.0 180.0
N3 C2 N2 H2N2 180.0 0.1
H2N1 N2 C2 N3 360.0 180.0
C2 N2 H2N1 H2N2 180.0 180.1
H2N2 N2 C2 N3 180.0 0.1
C2 N2 H2N2 H2N1 180.0 179.9
N9 C4 N3 C5 187.3 179.0