PDB Chemical Component G39

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for G39

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C1 O1A 1.249 1.215
C1 O1B 1.236 1.348
C1 C2 1.409 1.469
O1B HO1 0.949 0.967
C2 C3 1.520 1.500
C2 C7 1.406 1.317
C3 C4 1.559 1.531
C3 H31 1.100 1.090
C3 H32 1.100 1.090
C4 C5 1.509 1.533
C4 N4 1.391 1.469
C4 H4 1.100 1.091
C5 N5 1.463 1.465
C5 C6 1.571 1.530
C5 H5 1.100 1.090
N5 C10 1.328 1.348
N5 HN5 1.000 0.970
C10 O10 1.240 1.212
C10 C11 1.511 1.507
C11 H111 1.100 1.090
C11 H112 1.100 1.090
C11 H113 1.100 1.090
C6 C7 1.489 1.501
C6 O7 1.443 1.429
C6 H6 1.100 1.089
C7 H7 1.080 1.080
O7 C8 1.378 1.429
C8 C9 1.537 1.530
C8 C81 1.534 1.530
C8 H8 1.100 1.090
C9 C91 1.487 1.530
C9 H91 1.100 1.090
C9 H92 1.100 1.090
C81 C82 1.450 1.530
C81 H811 1.100 1.090
C81 H812 1.100 1.090
C82 H821 1.100 1.090
C82 H822 1.100 1.090
C82 H823 1.100 1.090
C91 H911 1.100 1.090
C91 H912 1.100 1.090
C91 H913 1.100 1.089
N4 HN41 1.000 1.008
N4 HN42 1.000 1.009

Bond Angles for G39

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O1A C1 O1B 120.1 120.0
O1A C1 C2 119.7 120.0
O1B C1 C2 120.1 120.0
C1 O1B HO1 109.5 117.0
C1 C2 C3 120.3 118.1
C1 C2 C7 121.2 118.1
C3 C2 C7 118.2 123.8
C2 C3 C4 119.6 110.1
C2 C3 H31 106.2 109.4
C2 C3 H32 106.2 109.4
C2 C7 C6 120.8 123.8
C2 C7 H7 119.6 118.2
C4 C3 H31 106.2 109.3
C4 C3 H32 106.2 109.3
C3 C4 C5 112.7 108.5
C3 C4 N4 105.5 109.6
C3 C4 H4 110.1 109.6
H31 C3 H32 112.5 109.3
C5 C4 N4 109.6 109.7
C5 C4 H4 106.0 109.6
C4 C5 N5 110.9 109.6
C4 C5 C6 107.9 108.5
C4 C5 H5 110.3 109.6
N4 C4 H4 113.2 109.8
C4 N4 HN41 109.5 111.0
C4 N4 HN42 109.5 111.0
N5 C5 C6 111.6 109.6
N5 C5 H5 106.5 109.6
C5 N5 C10 120.7 120.0
C5 N5 HN5 119.6 120.0
C6 C5 H5 109.6 109.8
C5 C6 C7 118.3 110.2
C5 C6 O7 115.2 109.4
C5 C6 H6 98.3 109.4
C10 N5 HN5 119.6 120.0
N5 C10 O10 122.0 120.0
N5 C10 C11 115.8 120.0
O10 C10 C11 122.2 120.0
C10 C11 H111 109.5 109.5
C10 C11 H112 109.5 109.5
C10 C11 H113 109.5 109.4
H111 C11 H112 109.5 109.5
H111 C11 H113 109.5 109.5
H112 C11 H113 109.5 109.5
C7 C6 O7 110.8 109.5
C7 C6 H6 104.1 109.2
C6 C7 H7 119.6 118.1
O7 C6 H6 108.2 109.2
C6 O7 C8 129.2 114.0
O7 C8 C9 107.6 109.5
O7 C8 C81 102.2 109.5
O7 C8 H8 119.6 109.4
C9 C8 C81 120.2 109.5
C9 C8 H8 101.5 109.5
C8 C9 C91 112.6 109.5
C8 C9 H91 108.4 109.4
C8 C9 H92 108.4 109.5
C81 C8 H8 106.9 109.5
C8 C81 C82 112.4 109.4
C8 C81 H811 108.5 109.5
C8 C81 H812 108.5 109.5
C91 C9 H91 108.5 109.5
C91 C9 H92 108.5 109.5
C9 C91 H911 109.5 109.4
C9 C91 H912 109.4 109.4
C9 C91 H913 109.5 109.5
H91 C9 H92 110.5 109.4
C82 C81 H811 108.5 109.5
C82 C81 H812 108.5 109.5
C81 C82 H821 109.5 109.5
C81 C82 H822 109.5 109.5
C81 C82 H823 109.4 109.4
H811 C81 H812 110.4 109.5
H821 C82 H822 109.4 109.5
H821 C82 H823 109.5 109.4
H822 C82 H823 109.5 109.5
H911 C91 H912 109.5 109.5
H911 C91 H913 109.5 109.5
H912 C91 H913 109.5 109.5
HN41 N4 HN42 109.5 111.0

Torsion Angles for G39

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O1B C1 O1A C2 183.8 180.3
O1A C1 O1B HO1 0.0 359.9
O1A C1 C2 C3 192.3 180.0
O1A C1 C2 C7 5.6 359.8
O1A C1 O1B C2 176.2 179.7
O1B C1 C2 C3 8.5 359.7
O1B C1 C2 C7 181.8 179.4
O1A C1 C2 O1B 183.8 180.3
C2 C1 O1B HO1 183.8 180.3
C3 C2 C1 C7 186.7 180.2
C1 C2 C3 C4 164.2 162.8
C1 C2 C3 H31 284.2 283.0
C1 C2 C3 H32 44.2 42.6
C1 C2 C7 C6 190.3 180.2
C1 C2 C7 H7 10.3 0.4
HO1 O1B C1 C2 183.8 180.3
C1 C2 C3 C7 173.5 179.8
C3 C2 C7 C6 3.8 359.9
C3 C2 C7 H7 183.8 180.2
C4 C3 C2 H31 240.0 239.8
C4 C3 C2 H32 120.0 120.2
C2 C3 C4 C5 35.5 49.7
C2 C3 C4 N4 155.0 169.5
C2 C3 C4 H4 277.4 290.1
H31 C3 C2 H32 240.0 240.4
C1 C2 C7 C3 186.5 180.2
C7 C2 C3 C4 350.7 343.1
C7 C2 C3 H31 110.7 103.3
C7 C2 C3 H32 230.7 222.9
C5 C6 C7 C2 335.4 343.3
C2 C7 C6 O7 199.2 223.0
C2 C7 C6 H6 83.1 103.4
C6 C7 C2 H7 180.0 179.8
C4 C3 C2 C7 350.7 343.1
C2 C3 C4 H31 120.0 120.2
C2 C3 C4 H32 240.0 239.8
H31 C3 C4 H32 120.0 119.6
C5 C4 C3 N4 240.5 240.2
C5 C4 C3 H4 118.1 119.7
C3 C4 C5 N5 186.1 172.2
C3 C4 C5 C6 308.6 292.0
C3 C4 C5 H5 68.3 51.9
N4 C4 C3 H4 237.6 239.4
C3 C4 N4 HN41 180.0 59.9
C3 C4 N4 HN42 300.0 183.9
H31 C3 C2 C7 110.7 103.3
C2 C3 H31 C4 231.7 239.3
C2 C3 H31 H32 115.8 119.7
C4 C3 H31 H32 244.2 240.4
H31 C3 C4 C5 275.5 289.5
H31 C3 C4 N4 35.0 49.3
H31 C3 C4 H4 157.4 169.9
H32 C3 C2 C7 230.7 222.9
C2 C3 H32 C4 128.4 120.7
C2 C3 H32 H31 244.2 240.3
C4 C3 H32 H31 115.8 119.6
H32 C3 C4 C5 155.5 170.0
H32 C3 C4 N4 275.0 289.7
H32 C3 C4 H4 37.4 50.3
C5 C4 C3 H31 275.5 289.5
C5 C4 C3 H32 155.5 170.0
C3 C4 C5 N4 117.1 119.8
C3 C4 C5 H4 239.6 240.3
N4 C4 C5 H4 122.4 120.6
C5 C4 N4 HN41 301.5 179.0
C5 C4 N4 HN42 61.6 303.0
N5 C5 C4 C6 237.5 240.3
N5 C5 C4 H5 117.8 120.4
C4 C5 N5 C10 249.4 205.0
C4 C5 N5 HN5 69.4 25.0
C6 C5 C4 H5 240.3 240.1
C4 C5 C6 C7 48.5 49.6
C4 C5 C6 O7 182.8 169.9
C4 C5 C6 H6 297.5 289.5
N4 C4 C3 H31 35.0 49.3
N4 C4 C3 H32 275.0 289.7
C3 C4 N4 C5 238.4 240.9
C3 C4 N4 H4 120.4 120.4
C5 C4 N4 H4 242.0 239.5
N4 C4 C5 N5 69.0 52.5
N4 C4 C5 C6 191.4 172.2
N4 C4 C5 H5 311.2 292.1
HN41 N4 C4 HN42 240.0 236.0
H4 C4 C3 H31 157.4 169.9
H4 C4 C3 H32 37.4 50.3
C3 C4 H4 C5 122.1 119.0
C3 C4 H4 N4 242.2 239.5
C5 C4 H4 N4 120.1 120.5
H4 C4 C5 N5 306.5 291.9
H4 C4 C5 C6 69.0 51.6
H4 C4 C5 H5 188.7 171.5
H4 C4 N4 HN41 59.6 299.5
H4 C4 N4 HN42 179.6 63.5
N5 C5 C4 N4 69.0 52.5
N5 C5 C4 H4 306.5 291.9
C4 C5 N5 C6 120.3 119.0
C4 C5 N5 H5 239.9 239.6
C6 C5 N5 H5 119.6 120.6
N5 C5 C6 C7 170.5 169.3
N5 C5 C6 O7 304.9 289.7
N5 C5 C6 H6 59.5 49.2
C10 N5 C5 HN5 180.0 180.0
C5 N5 C10 O10 358.2 360.0
C5 N5 C10 C11 180.0 180.0
C2 C7 C6 C5 335.4 343.3
C6 C5 C4 N4 191.4 172.2
C6 C5 C4 H4 69.0 51.6
C4 C5 C6 N5 238.0 240.3
C4 C5 C6 H5 120.2 119.8
N5 C5 C6 H5 242.2 239.5
C6 C5 N5 C10 129.1 86.0
C6 C5 N5 HN5 309.1 265.9
C7 C6 C5 O7 225.7 239.6
C7 C6 C5 H6 111.0 120.1
C5 C6 C7 H7 155.4 163.1
O7 C6 C5 H6 245.3 240.4
C5 C6 O7 C8 91.2 150.0
H5 C5 C4 N4 311.2 292.1
H5 C5 C4 H4 188.7 171.5
C4 C5 H5 N5 120.4 120.4
C4 C5 H5 C6 241.3 240.9
N5 C5 H5 C6 120.9 120.5
H5 C5 N5 C10 9.5 325.4
H5 C5 N5 HN5 189.5 145.4
H5 C5 C6 C7 288.3 289.8
H5 C5 C6 O7 62.7 50.1
H5 C5 C6 H6 177.3 169.7
C10 N5 C5 C6 129.1 86.0
C10 N5 C5 H5 9.5 325.4
C5 N5 C10 HN5 180.0 180.0
O10 C10 N5 C11 178.1 180.0
N5 C10 C11 H111 178.1 360.0
N5 C10 C11 H112 298.1 120.0
N5 C10 C11 H113 58.1 240.0
HN5 N5 C5 C6 309.1 265.9
HN5 N5 C5 H5 189.5 145.4
C5 N5 HN5 C10 180.0 180.0
HN5 N5 C10 O10 178.2 180.0
HN5 N5 C10 C11 0.0 0.0
O10 C10 N5 HN5 178.2 180.0
N5 C10 O10 C11 182.0 180.0
O10 C10 C11 H111 360.0 180.0
O10 C10 C11 H112 120.0 300.0
O10 C10 C11 H113 240.0 60.0
C11 C10 N5 HN5 0.0 0.0
N5 C10 C11 O10 178.1 180.0
H111 C11 C10 H112 240.0 240.0
H111 C11 C10 H113 120.0 120.0
H112 C11 C10 H113 240.0 240.0
C10 C11 H111 H112 120.0 120.0
C10 C11 H111 H113 240.0 240.1
H112 C11 H111 H113 120.0 120.0
C10 C11 H112 H111 240.0 240.0
C10 C11 H112 H113 120.0 120.0
H111 C11 H112 H113 240.0 240.0
C10 C11 H113 H111 120.0 120.0
C10 C11 H113 H112 240.0 240.0
H111 C11 H113 H112 120.0 120.0
C2 C7 C6 H7 180.0 180.2
C7 C6 C5 H5 288.3 289.8
C5 C6 C7 O7 136.2 120.3
C5 C6 C7 H6 252.3 239.8
O7 C6 C7 H6 116.1 119.5
C7 C6 O7 C8 228.8 270.8
O7 C6 C5 H5 62.7 50.1
C5 C6 O7 C7 222.4 239.2
C5 C6 O7 H6 108.8 119.7
C7 C6 O7 H6 246.4 240.5
O7 C6 C7 H7 19.2 42.7
C6 O7 C8 C9 78.2 150.0
C6 O7 C8 C81 205.6 270.0
C6 O7 C8 H8 323.4 30.0
H6 C6 C5 H5 177.3 169.7
C5 C6 H6 C7 122.0 120.7
C5 C6 H6 O7 240.0 240.3
C7 C6 H6 O7 118.0 119.7
H6 C6 C7 H7 263.1 283.2
H6 C6 O7 C8 342.3 30.3
C2 C7 H7 C6 180.0 179.8
H7 C7 C6 O7 19.2 42.7
H7 C7 C6 H6 263.1 283.2
C8 O7 C6 H6 342.3 30.3
C9 C8 O7 C81 232.6 240.0
C9 C8 O7 H8 114.8 120.0
O7 C8 C9 C91 58.9 295.0
O7 C8 C9 H91 178.9 55.1
O7 C8 C9 H92 298.9 175.0
C81 C8 O7 H8 242.2 240.0
O7 C8 C81 C82 63.0 65.0
O7 C8 C81 H811 183.0 185.0
O7 C8 C81 H812 303.0 305.0
O7 C8 C9 C81 116.1 120.0
O7 C8 C9 H8 233.6 240.1
C81 C8 C9 H8 117.5 120.0
C9 C8 C81 C82 181.8 185.0
C9 C8 C81 H811 301.8 305.0
C9 C8 C81 H812 61.8 65.0
C91 C9 C8 H91 240.0 240.0
C91 C9 C8 H92 120.0 120.0
C8 C9 C91 H911 180.0 300.0
C8 C9 C91 H912 300.0 60.0
C8 C9 C91 H913 60.0 180.0
H91 C9 C8 H92 240.0 240.1
O7 C8 C81 C9 241.2 240.0
O7 C8 C81 H8 126.5 120.0
C9 C8 C81 H8 245.3 240.0
C81 C8 C9 C91 302.8 175.0
C81 C8 C9 H91 62.9 295.0
C81 C8 C9 H92 182.8 55.0
C82 C81 C8 H811 240.0 240.0
C82 C81 C8 H812 120.0 120.0
C8 C81 C82 H821 180.0 300.0
C8 C81 C82 H822 300.0 60.0
C8 C81 C82 H823 60.0 180.0
H811 C81 C8 H812 240.0 240.0
O7 C8 H8 C9 118.0 119.9
O7 C8 H8 C81 244.7 240.0
C9 C8 H8 C81 126.7 120.0
H8 C8 C9 C91 185.3 55.0
H8 C8 C9 H91 305.4 175.0
H8 C8 C9 H92 65.3 294.9
H8 C8 C81 C82 296.5 305.0
H8 C8 C81 H811 56.5 65.0
H8 C8 C81 H812 176.5 185.0
C91 C9 C8 C81 302.8 175.0
C91 C9 C8 H8 185.3 55.0
C8 C9 C91 H91 120.0 120.0
C8 C9 C91 H92 240.0 240.0
H91 C9 C91 H92 120.0 120.0
H911 C91 C9 H912 240.0 240.0
H911 C91 C9 H913 120.0 120.0
H912 C91 C9 H913 240.0 240.0
H91 C9 C8 C81 62.9 295.0
H91 C9 C8 H8 305.4 175.0
C8 C9 H91 C91 237.5 240.0
C8 C9 H91 H92 118.7 119.9
C91 C9 H91 H92 241.2 240.0
H91 C9 C91 H911 60.0 180.0
H91 C9 C91 H912 180.0 300.0
H91 C9 C91 H913 300.0 60.0
H92 C9 C8 C81 182.8 55.0
H92 C9 C8 H8 65.3 294.9
C8 C9 H92 C91 122.5 120.0
C8 C9 H92 H91 241.3 240.1
C91 C9 H92 H91 118.8 120.0
H92 C9 C91 H911 300.0 60.0
H92 C9 C91 H912 60.0 180.0
H92 C9 C91 H913 180.0 300.0
C82 C81 C8 H8 296.5 305.0
C8 C81 C82 H811 120.0 120.0
C8 C81 C82 H812 240.0 240.0
H811 C81 C82 H812 120.0 120.0
H821 C82 C81 H822 240.0 239.9
H821 C82 C81 H823 120.0 119.9
H822 C82 C81 H823 240.0 240.0
H811 C81 C8 H8 56.5 65.0
C8 C81 H811 C82 237.6 240.0
C8 C81 H811 H812 118.8 120.0
C82 C81 H811 H812 241.2 240.0
H811 C81 C82 H821 60.0 180.0
H811 C81 C82 H822 180.0 300.0
H811 C81 C82 H823 300.0 60.0
H812 C81 C8 H8 176.5 185.0
C8 C81 H812 C82 122.4 120.0
C8 C81 H812 H811 241.2 240.0
C82 C81 H812 H811 118.8 120.0
H812 C81 C82 H821 300.0 59.9
H812 C81 C82 H822 60.0 180.0
H812 C81 C82 H823 180.0 300.0
H821 C82 C81 H811 60.0 180.0
H821 C82 C81 H812 300.0 59.9
C81 C82 H821 H822 120.0 120.1
C81 C82 H821 H823 240.0 240.0
H822 C82 H821 H823 120.0 120.0
H822 C82 C81 H811 180.0 300.0
H822 C82 C81 H812 60.0 180.0
C81 C82 H822 H821 240.0 239.9
C81 C82 H822 H823 120.0 120.0
H821 C82 H822 H823 240.0 240.0
H823 C82 C81 H811 300.0 60.0
H823 C82 C81 H812 180.0 300.0
C81 C82 H823 H821 120.0 120.0
C81 C82 H823 H822 240.0 240.0
H821 C82 H823 H822 120.0 120.0
H911 C91 C9 H91 60.0 180.0
H911 C91 C9 H92 300.0 60.0
C9 C91 H911 H912 120.0 119.9
C9 C91 H911 H913 240.0 240.0
H912 C91 H911 H913 120.0 120.1
H912 C91 C9 H91 180.0 300.0
H912 C91 C9 H92 60.0 180.0
C9 C91 H912 H911 240.0 240.0
C9 C91 H912 H913 120.0 120.0
H911 C91 H912 H913 240.0 239.9
H913 C91 C9 H91 300.0 60.0
H913 C91 C9 H92 180.0 300.0
C9 C91 H913 H911 120.0 119.9
C9 C91 H913 H912 240.0 240.1
H911 C91 H913 H912 120.0 120.1
HN41 N4 C4 H4 59.6 299.5
C4 N4 HN41 HN42 120.0 124.0
HN42 N4 C4 H4 179.6 63.5
C4 N4 HN42 HN41 240.0 236.0