PDB Chemical Component G36

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for G36

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
P O1P 1.497 1.479
P O2P 1.521 1.610
P O3P 1.622 1.610
P O5' 1.590 1.610
O2P H2P 0.950 0.967
O3P H3P 0.950 0.967
O5' C5' 1.472 1.429
C5' C4' 1.550 1.530
C5' H5'1 1.115 1.090
C5' H5'2 1.115 1.090
C4' O4' 1.436 1.446
C4' C3' 1.504 1.549
C4' H4' 1.115 1.090
O4' C1' 1.482 1.438
C3' O3' 1.448 1.429
C3' C2' 1.553 1.548
C3' H3' 1.115 1.090
O3' HA 0.950 0.967
C2' C1' 1.500 1.542
C2' H2'1 1.115 1.090
C2' H2'2 1.115 1.090
CM2 C1M 1.551 1.530
CM2 HM21 1.115 1.090
CM2 HM22 1.115 1.090
CM2 HM23 1.115 1.091
C1' N9 1.473 1.465
C1' H1' 1.115 1.090
N9 C8 1.383 1.365
N9 C4 1.388 1.372
C8 N7 1.310 1.301
C8 H8 1.103 1.080
N7 C5 1.402 1.356
C5 C6 1.409 1.403
C5 C4 1.374 1.406
C6 O6 1.338 1.354
C6 N1 1.373 1.326
O6 C1M 1.328 1.429
N1 C2 1.340 1.327
C2 N2 1.341 1.385
C2 N3 1.340 1.323
N2 H2N1 1.020 0.970
N2 H2N2 1.021 0.970
C1M H1M1 1.115 1.090
C1M H1M2 1.115 1.090
N3 C4 1.341 1.329

Bond Angles for G36

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O1P P O2P 114.3 109.5
O1P P O3P 100.3 109.5
O1P P O5' 114.5 109.5
O2P P O3P 107.5 109.4
O2P P O5' 110.7 109.5
P O2P H2P 114.3 106.8
O3P P O5' 108.5 109.5
P O3P H3P 100.3 106.8
P O5' C5' 121.5 106.8
O5' C5' C4' 104.7 109.5
O5' C5' H5'1 114.0 109.5
O5' C5' H5'2 114.0 109.5
C4' C5' H5'1 114.0 109.4
C4' C5' H5'2 114.0 109.5
C5' C4' O4' 107.1 110.7
C5' C4' C3' 115.5 110.6
C5' C4' H4' 108.9 110.5
H5'1 C5' H5'2 96.5 109.4
O4' C4' C3' 107.5 103.6
O4' C4' H4' 108.9 110.5
C4' O4' C1' 107.7 106.8
C3' C4' H4' 108.9 110.7
C4' C3' O3' 117.6 110.9
C4' C3' C2' 103.8 102.1
C4' C3' H3' 108.0 110.9
O4' C1' C2' 102.9 107.4
O4' C1' N9 112.5 109.9
O4' C1' H1' 108.5 109.9
O3' C3' C2' 110.9 110.9
O3' C3' H3' 108.1 110.8
C3' O3' HA 117.6 106.7
C2' C3' H3' 108.0 110.9
C3' C2' C1' 101.3 104.2
C3' C2' H2'1 115.4 110.5
C3' C2' H2'2 115.3 110.5
C1' C2' H2'1 115.3 110.5
C1' C2' H2'2 115.3 110.4
C2' C1' N9 115.8 109.9
C2' C1' H1' 108.4 109.8
H2'1 C2' H2'2 95.1 110.6
C1M CM2 HM21 108.8 109.5
C1M CM2 HM22 112.4 109.5
C1M CM2 HM23 112.4 109.4
CM2 C1M O6 108.9 109.5
CM2 C1M H1M1 112.4 109.4
CM2 C1M H1M2 112.4 109.5
HM21 CM2 HM22 112.5 109.5
HM21 CM2 HM23 112.4 109.4
HM22 CM2 HM23 98.0 109.5
N9 C1' H1' 108.4 109.9
C1' N9 C8 130.5 126.3
C1' N9 C4 124.7 126.3
C8 N9 C4 104.8 107.4
N9 C8 N7 114.0 110.0
N9 C8 H8 123.0 125.0
N9 C4 C5 107.0 106.0
N9 C4 N3 125.5 134.8
N7 C8 H8 123.0 125.0
C8 N7 C5 104.3 109.5
N7 C5 C6 132.0 134.6
N7 C5 C4 110.0 107.1
C6 C5 C4 118.0 118.3
C5 C6 O6 131.6 120.7
C5 C6 N1 114.5 118.6
C5 C4 N3 127.5 119.2
O6 C6 N1 113.8 120.7
C6 O6 C1M 131.7 106.8
C6 N1 C2 122.4 121.2
O6 C1M H1M1 112.4 109.5
O6 C1M H1M2 112.4 109.4
N1 C2 N2 115.1 118.9
N1 C2 N3 125.6 122.2
N2 C2 N3 119.4 118.9
C2 N2 H2N1 115.1 120.0
C2 N2 H2N2 119.3 120.0
C2 N3 C4 111.9 120.5
H2N1 N2 H2N2 125.6 120.0
H1M1 C1M H1M2 98.0 109.5

Torsion Angles for G36

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O2P P O1P O3P 245.3 120.0
O2P P O1P O5' 129.3 240.0
O1P P O2P H2P 180.0 300.0
O3P P O1P O5' 244.0 120.0
O1P P O3P H3P 180.0 180.0
O1P P O5' C5' 229.7 55.0
O1P P O2P O3P 110.4 240.0
O1P P O2P O5' 228.8 120.0
O3P P O2P O5' 118.4 240.0
O2P P O3P H3P 299.8 60.0
O2P P O5' C5' 98.6 175.0
O1P P O3P O2P 240.2 120.0
O1P P O3P O5' 120.4 240.0
O2P P O3P O5' 240.2 120.0
O3P P O2P H2P 69.5 60.1
O3P P O5' C5' 340.8 295.0
O1P P O5' O2P 131.1 240.0
O1P P O5' O3P 248.9 120.0
O2P P O5' O3P 117.8 240.1
O5' P O2P H2P 311.1 180.0
O5' P O3P H3P 59.6 300.0
P O5' C5' C4' 114.7 180.0
P O5' C5' H5'1 349.4 60.0
P O5' C5' H5'2 240.0 300.0
H2P O2P P O3P 69.5 60.1
H2P O2P P O5' 311.1 180.0
H3P O3P P O5' 59.6 300.0
C4' C5' O5' H5'1 125.3 120.0
C4' C5' O5' H5'2 234.7 240.0
O5' C5' C4' O4' 295.2 70.7
O5' C5' C4' C3' 54.8 185.0
O5' C5' C4' H4' 177.6 307.9
H5'1 C5' O5' H5'2 109.5 120.0
O5' C5' C4' H5'1 234.7 239.9
O5' C5' C4' H5'2 125.3 120.0
H5'1 C5' C4' H5'2 250.6 240.1
O4' C4' C5' C3' 240.4 245.7
O4' C4' C5' H4' 117.5 122.8
C5' C4' O4' C1' 137.8 158.5
C3' C4' C5' H4' 237.2 237.1
C5' C4' C3' O3' 130.3 86.1
C5' C4' C3' C2' 253.3 204.3
C5' C4' C3' H3' 7.8 322.5
O5' C5' H5'1 C4' 120.2 120.1
O5' C5' H5'1 H5'2 240.1 240.0
C4' C5' H5'1 H5'2 119.9 119.9
H5'1 C5' C4' O4' 60.4 190.7
H5'1 C5' C4' C3' 180.1 305.0
H5'1 C5' C4' H4' 302.9 68.0
O5' C5' H5'2 C4' 239.8 240.0
O5' C5' H5'2 H5'1 119.9 120.0
C4' C5' H5'2 H5'1 240.1 240.1
H5'2 C5' C4' O4' 169.9 310.7
H5'2 C5' C4' C3' 289.5 65.0
H5'2 C5' C4' H4' 52.3 187.9
O4' C4' C5' H5'1 60.4 190.7
O4' C4' C5' H5'2 169.9 310.7
C5' C4' O4' C3' 124.7 118.6
C5' C4' O4' H4' 242.4 237.2
C3' C4' O4' H4' 117.7 118.6
O4' C4' C3' O3' 249.8 204.8
O4' C4' C3' C2' 12.7 323.0
O4' C4' C3' H3' 127.2 81.2
C4' O4' C1' C2' 325.5 333.7
C4' O4' C1' N9 200.2 214.1
C4' O4' C1' H1' 80.3 93.2
C3' C4' C5' H5'1 180.1 305.0
C3' C4' C5' H5'2 289.5 65.0
C5' C4' C3' O4' 240.6 241.3
C5' C4' C3' H4' 122.8 122.8
O4' C4' C3' H4' 242.2 241.6
C3' C4' O4' C1' 13.1 39.9
O3' C3' C4' C2' 237.0 241.8
O3' C3' C4' H3' 122.5 123.6
C4' C3' O3' HA 180.0 174.1
C2' C3' C4' H3' 245.5 241.8
C4' C3' C2' C1' 327.1 20.9
C4' C3' C2' H2'1 201.9 262.2
C4' C3' C2' H2'2 92.4 139.5
H4' C4' C5' H5'1 302.9 68.0
H4' C4' C5' H5'2 52.3 187.9
C5' C4' H4' O4' 116.4 122.9
C5' C4' H4' C3' 233.3 237.1
O4' C4' H4' C3' 116.9 114.2
H4' C4' O4' C1' 255.3 281.3
H4' C4' C3' O3' 7.5 323.3
H4' C4' C3' C2' 130.5 81.5
H4' C4' C3' H3' 245.0 199.6
C1' O4' C4' C3' 13.1 39.9
C1' O4' C4' H4' 255.3 281.3
C3' C2' C1' O4' 40.6 1.9
O4' C1' C2' H2'1 165.9 120.6
O4' C1' C2' H2'2 275.3 243.3
C2' C1' O4' N9 125.3 119.5
C2' C1' O4' H1' 245.3 240.5
N9 C1' O4' H1' 119.9 121.0
O4' C1' N9 C8 67.3 23.4
O4' C1' N9 C4 249.4 203.2
O3' C3' C4' H4' 7.5 323.3
C4' C3' O3' C2' 119.2 112.7
C4' C3' O3' H3' 237.5 236.3
C2' C3' O3' H3' 118.2 123.6
O3' C3' C2' C1' 94.3 139.1
O3' C3' C2' H2'1 329.1 20.5
O3' C3' C2' H2'2 219.6 257.8
C2' C3' C4' H4' 130.5 81.5
C4' C3' C2' O3' 232.8 241.8
C4' C3' C2' H3' 114.5 118.2
O4' C1' C2' C3' 40.6 1.9
O3' C3' C2' H3' 241.8 236.4
C2' C3' O3' HA 60.8 61.4
C1' C2' C3' H2'1 125.3 118.7
C1' C2' C3' H2'2 234.7 241.4
C3' C2' C1' N9 163.7 121.5
C3' C2' C1' H1' 285.8 242.5
H2'1 C2' C3' H2'2 109.5 122.7
H3' C3' C4' H4' 245.0 199.6
C4' C3' H3' O3' 128.2 123.7
C4' C3' H3' C2' 248.3 247.3
O3' C3' H3' C2' 120.1 123.6
H3' C3' O3' HA 302.5 297.8
H3' C3' C2' C1' 212.6 262.7
H3' C3' C2' H2'1 87.3 144.1
H3' C3' C2' H2'2 337.9 21.4
HA O3' C3' C2' 60.8 61.4
HA O3' C3' H3' 302.5 297.8
O4' C1' C2' N9 236.9 240.5
O4' C1' C2' H1' 114.8 119.5
C1' C2' C3' H3' 212.6 262.7
C3' C2' C1' H2'1 234.7 241.3
C3' C2' C1' H2'2 125.3 118.6
H2'1 C2' C1' H2'2 250.5 237.3
N9 C1' C2' H1' 237.9 239.0
C2' C1' N9 C8 309.4 265.3
C2' C1' N9 C4 131.5 85.2
H2'1 C2' C3' H3' 87.3 144.1
C3' C2' H2'1 C1' 117.7 114.7
C3' C2' H2'1 H2'2 238.8 237.3
C1' C2' H2'1 H2'2 121.2 122.6
H2'1 C2' C1' N9 289.0 240.1
H2'1 C2' C1' H1' 51.1 1.1
H2'2 C2' C3' H3' 337.9 21.4
C3' C2' H2'2 C1' 242.3 245.3
C3' C2' H2'2 H2'1 121.2 122.7
C1' C2' H2'2 H2'1 238.8 237.4
H2'2 C2' C1' N9 38.5 2.8
H2'2 C2' C1' H1' 160.6 123.8
HM21 CM2 C1M HM22 125.3 239.9
HM21 CM2 C1M HM23 234.8 119.9
HM22 CM2 C1M HM23 109.5 240.0
C6 O6 C1M CM2 55.8 180.0
O6 C1M CM2 H1M1 234.7 240.0
O6 C1M CM2 H1M2 125.2 120.0
H1M1 C1M CM2 H1M2 250.5 240.0
C1M CM2 HM21 HM22 234.8 120.1
C1M CM2 HM21 HM23 125.2 240.1
HM21 CM2 C1M O6 180.0 179.9
HM21 CM2 C1M H1M1 305.3 299.9
HM21 CM2 C1M H1M2 54.8 60.0
HM22 CM2 HM21 HM23 250.5 120.0
C1M CM2 HM22 HM21 123.3 240.0
C1M CM2 HM22 HM23 241.7 120.0
HM22 CM2 C1M O6 54.7 300.0
HM22 CM2 C1M H1M1 180.0 60.0
HM22 CM2 C1M H1M2 289.5 180.0
HM21 CM2 HM22 HM23 118.4 240.0
C1M CM2 HM23 HM21 236.8 119.9
C1M CM2 HM23 HM22 118.3 240.0
HM23 CM2 C1M O6 305.2 60.0
HM23 CM2 C1M H1M1 70.5 180.0
HM23 CM2 C1M H1M2 180.0 300.0
HM21 CM2 HM23 HM22 241.6 120.0
O4' C1' N9 C2' 117.9 118.0
O4' C1' N9 H1' 240.0 239.0
N9 C1' C2' H2'1 289.0 240.1
N9 C1' C2' H2'2 38.5 2.8
C2' C1' N9 H1' 122.1 121.0
C8 N9 C1' C4 178.0 180.1
C1' N9 C8 N7 182.0 180.0
C1' N9 C8 H8 2.0 359.9
C1' N9 C4 C5 178.1 180.3
C1' N9 C4 N3 359.7 0.1
O4' C1' H1' C2' 249.0 242.0
O4' C1' H1' N9 122.4 121.0
H1' C1' C2' H2'1 51.1 1.1
H1' C1' C2' H2'2 160.6 123.8
C2' C1' H1' N9 233.5 239.0
H1' C1' N9 C8 187.3 144.4
H1' C1' N9 C4 9.3 324.2
C8 N9 C1' H1' 187.3 144.4
C1' N9 C8 C4 181.7 179.9
C8 N9 C4 C5 359.7 0.2
C8 N9 C4 N3 181.3 180.0
N7 C8 N9 H8 180.0 180.1
N9 C8 N7 C5 359.8 359.7
C4 N9 C1' H1' 9.3 324.2
C1' N9 C4 C8 178.4 180.1
C4 N9 C8 N7 0.3 0.1
C4 N9 C8 H8 180.3 180.0
N7 C5 C4 N9 0.2 359.6
C6 C5 C4 N9 180.8 180.4
C5 C4 N9 N3 178.4 180.2
C2 N3 C4 N9 179.8 180.0
N7 C8 N9 C4 0.3 0.1
N9 C8 N7 H8 180.0 179.9
C8 N7 C5 C6 179.3 179.5
C8 N7 C5 C4 0.0 0.4
H8 C8 N9 C4 180.3 180.0
N9 C8 H8 N7 180.0 180.1
H8 C8 N7 C5 179.8 179.7
N9 C4 C5 N7 0.2 359.6
C5 N7 C8 H8 179.8 179.7
C6 C5 N7 C4 179.3 179.1
N7 C5 C6 O6 3.2 0.8
N7 C5 C6 N1 179.5 180.4
N7 C5 C4 N3 178.5 179.8
N9 C4 C5 C6 180.8 180.4
N7 C5 C6 C4 180.8 181.0
C6 C5 C4 N3 359.2 0.5
O6 C6 C5 N1 183.8 180.3
C5 C6 O6 C1M 311.8 179.7
C5 C6 N1 C2 2.5 0.3
N9 C4 C5 N3 181.6 179.9
N7 C5 C4 C6 179.4 179.2
C4 C5 C6 O6 182.4 179.8
C4 C5 C6 N1 358.7 359.4
C2 N3 C4 C5 1.8 359.8
CM2 C1M O6 C6 55.8 180.0
O6 C6 C5 C4 182.4 179.8
C5 C6 O6 N1 176.3 179.6
O6 C6 N1 C2 179.4 180.0
C6 O6 C1M H1M1 290.6 60.0
C6 O6 C1M H1M2 181.1 299.9
N1 C6 C5 C4 358.7 359.4
C5 C6 N1 O6 183.1 180.3
N1 C6 O6 C1M 135.5 0.1
C6 N1 C2 N2 177.3 180.0
C6 N1 C2 N3 358.3 0.0
O6 C1M CM2 HM21 180.0 179.9
O6 C1M CM2 HM22 54.7 300.0
O6 C1M CM2 HM23 305.2 60.0
CM2 C1M O6 H1M1 125.2 120.0
CM2 C1M O6 H1M2 234.8 240.0
C1M O6 C6 N1 135.5 0.1
H1M1 C1M O6 H1M2 109.5 120.1
N2 C2 N1 N3 178.9 180.0
N1 C2 N2 H2N1 180.0 0.0
N1 C2 N2 H2N2 1.0 180.0
N1 C2 N3 C4 359.5 359.9
N1 C2 N2 N3 181.0 180.0
N2 C2 N3 C4 180.6 180.0
H2N1 N2 C2 H2N2 179.0 180.0
N9 C4 N3 C2 179.8 180.0
C5 C4 N3 C2 1.8 359.8
N1 C2 N3 N2 178.9 180.0
N3 C2 N2 H2N1 359.0 180.0
N3 C2 N2 H2N2 180.0 359.9
H2N1 N2 C2 N3 359.0 180.0
C2 N2 H2N1 H2N2 181.1 180.0
H2N2 N2 C2 N3 180.0 359.9
C2 N2 H2N2 H2N1 178.9 180.0
H1M1 C1M CM2 HM21 305.3 299.9
H1M1 C1M CM2 HM22 180.0 60.0
H1M1 C1M CM2 HM23 70.5 180.0
CM2 C1M H1M1 O6 236.7 240.0
CM2 C1M H1M1 H1M2 118.3 120.0
O6 C1M H1M1 H1M2 241.6 240.0
H1M2 C1M CM2 HM21 54.8 60.0
H1M2 C1M CM2 HM22 289.5 180.0
H1M2 C1M CM2 HM23 180.0 300.0
CM2 C1M H1M2 O6 123.3 120.0
CM2 C1M H1M2 H1M1 241.7 240.0
O6 C1M H1M2 H1M1 118.4 120.0
N9 C4 N3 C5 178.1 180.2