PDB Chemical Component G2Y
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for G2Y
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O08 |
C02 |
1.456 |
1.429 |
| CL1 |
C01 |
1.849 |
1.803 |
| C01 |
C02 |
1.507 |
1.532 |
| C01 |
C06 |
1.541 |
1.531 |
| C02 |
C03 |
1.503 |
1.532 |
| C10 |
C06 |
1.489 |
1.530 |
| C10 |
O11 |
1.419 |
1.430 |
| C06 |
O05 |
1.488 |
1.430 |
| C03 |
O09 |
1.442 |
1.429 |
| C03 |
C04 |
1.526 |
1.530 |
| O05 |
C04 |
1.504 |
1.429 |
| C04 |
O12 |
1.349 |
1.429 |
| O19 |
C15 |
1.369 |
1.429 |
| O12 |
C13 |
1.458 |
1.429 |
| C15 |
C14 |
1.536 |
1.549 |
| C15 |
C13 |
1.568 |
1.541 |
| C14 |
C17 |
1.380 |
1.550 |
| C14 |
O20 |
1.493 |
1.429 |
| C18 |
C13 |
1.526 |
1.530 |
| C18 |
CL3 |
1.773 |
1.804 |
| C13 |
O16 |
1.298 |
1.438 |
| C17 |
O16 |
1.611 |
1.444 |
| C17 |
C21 |
1.507 |
1.530 |
| C21 |
CL2 |
1.809 |
1.804 |
| C01 |
H011 |
1.100 |
1.091 |
| C02 |
H021 |
1.100 |
1.090 |
| C03 |
H031 |
1.101 |
1.090 |
| C04 |
H041 |
1.100 |
1.090 |
| C06 |
H061 |
1.100 |
1.090 |
| C10 |
H102 |
1.099 |
1.090 |
| C10 |
H101 |
1.100 |
1.089 |
| C14 |
H141 |
1.100 |
1.091 |
| C15 |
H151 |
1.100 |
1.090 |
| C17 |
H171 |
1.100 |
1.090 |
| C18 |
H182 |
1.100 |
1.090 |
| C18 |
H181 |
1.100 |
1.090 |
| C21 |
H211 |
1.100 |
1.089 |
| C21 |
H212 |
1.100 |
1.089 |
| O08 |
H081 |
0.950 |
0.967 |
| O09 |
H091 |
0.950 |
0.967 |
| O11 |
H111 |
0.950 |
0.967 |
| O19 |
H191 |
0.949 |
0.967 |
| O20 |
H201 |
0.950 |
0.967 |
Bond Angles for G2Y
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O08 |
C02 |
H021 |
108.6 |
109.6 |
| CL1 |
C01 |
H011 |
106.1 |
109.6 |
| C02 |
C01 |
C06 |
112.1 |
109.2 |
| C01 |
C02 |
C03 |
110.0 |
109.0 |
| C02 |
C01 |
H011 |
109.9 |
109.5 |
| C01 |
C02 |
H021 |
107.9 |
109.6 |
| C01 |
C06 |
O05 |
112.3 |
109.4 |
| C06 |
C01 |
H011 |
109.4 |
109.5 |
| C01 |
C06 |
H061 |
107.7 |
109.5 |
| C02 |
C03 |
O09 |
114.0 |
109.5 |
| C02 |
C03 |
C04 |
106.0 |
109.2 |
| C03 |
C02 |
H021 |
108.0 |
109.5 |
| C02 |
C03 |
H031 |
107.9 |
109.5 |
| C10 |
C06 |
O05 |
108.4 |
109.5 |
| C10 |
C06 |
H061 |
108.4 |
109.5 |
| O11 |
C10 |
H102 |
110.5 |
109.4 |
| O11 |
C10 |
H101 |
110.5 |
109.5 |
| C10 |
O11 |
H111 |
109.5 |
114.0 |
| O05 |
C06 |
H061 |
108.4 |
109.5 |
| C04 |
C03 |
O09 |
112.3 |
109.6 |
| O09 |
C03 |
H031 |
108.7 |
109.5 |
| C03 |
O09 |
H091 |
109.5 |
114.0 |
| C03 |
C04 |
O12 |
110.1 |
109.4 |
| C04 |
C03 |
H031 |
107.6 |
109.6 |
| C03 |
C04 |
H041 |
109.4 |
109.5 |
| O05 |
C04 |
O12 |
113.7 |
109.5 |
| O05 |
C04 |
H041 |
109.7 |
109.5 |
| C04 |
O12 |
C13 |
127.3 |
114.0 |
| O12 |
C04 |
H041 |
112.1 |
109.5 |
| O19 |
C15 |
H151 |
108.2 |
110.5 |
| O12 |
C13 |
O16 |
87.0 |
109.9 |
| C15 |
C14 |
C17 |
108.3 |
102.1 |
| C15 |
C14 |
O20 |
105.2 |
110.9 |
| C15 |
C14 |
H141 |
108.6 |
110.9 |
| C15 |
C13 |
O16 |
111.6 |
107.3 |
| C17 |
C14 |
O20 |
114.6 |
110.9 |
| C14 |
C17 |
O16 |
108.0 |
103.5 |
| C14 |
C17 |
C21 |
117.0 |
110.6 |
| C17 |
C14 |
H141 |
110.8 |
110.9 |
| C14 |
C17 |
H171 |
108.7 |
110.6 |
| O20 |
C14 |
H141 |
109.1 |
110.8 |
| C14 |
O20 |
H201 |
109.5 |
114.0 |
| C18 |
C13 |
O16 |
129.1 |
109.8 |
| CL3 |
C18 |
H182 |
112.8 |
109.4 |
| CL3 |
C18 |
H181 |
112.8 |
109.4 |
| C13 |
O16 |
C17 |
106.1 |
106.9 |
| C21 |
C17 |
O16 |
109.7 |
110.6 |
| O16 |
C17 |
H171 |
105.9 |
110.7 |
| C17 |
C21 |
CL2 |
114.4 |
109.4 |
| C21 |
C17 |
H171 |
107.0 |
110.7 |
| C17 |
C21 |
H211 |
108.2 |
109.5 |
| C17 |
C21 |
H212 |
108.2 |
109.5 |
| CL2 |
C21 |
H211 |
108.2 |
109.4 |
| CL2 |
C21 |
H212 |
108.2 |
109.4 |
| H102 |
C10 |
H101 |
109.5 |
109.5 |
| H182 |
C18 |
H181 |
109.5 |
109.4 |
| H211 |
C21 |
H212 |
109.5 |
109.5 |
Torsion Angles for G2Y
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O08 |
C02 |
C01 |
H011 |
291.9 |
296.7 |
| C01 |
C02 |
O08 |
H021 |
118.7 |
120.3 |
| O08 |
C02 |
C03 |
O09 |
49.0 |
63.2 |
| C03 |
C02 |
O08 |
H021 |
241.5 |
239.8 |
| O08 |
C02 |
C03 |
H031 |
288.1 |
303.1 |
| C02 |
C01 |
CL1 |
H011 |
240.9 |
239.9 |
| CL1 |
C01 |
C02 |
H021 |
167.8 |
177.2 |
| C06 |
C01 |
CL1 |
H011 |
117.5 |
120.2 |
| CL1 |
C01 |
C06 |
H061 |
196.1 |
182.3 |
| O08 |
C02 |
C01 |
H021 |
240.9 |
239.7 |
| CL1 |
C01 |
C02 |
H011 |
116.8 |
120.2 |
| C02 |
C01 |
C06 |
O05 |
314.4 |
302.4 |
| C06 |
C01 |
C02 |
H011 |
238.1 |
240.2 |
| C02 |
C01 |
C06 |
H061 |
73.7 |
62.3 |
| C01 |
C02 |
C03 |
O09 |
172.6 |
183.1 |
| C01 |
C02 |
C03 |
C04 |
296.6 |
303.0 |
| C03 |
C02 |
C01 |
H021 |
117.6 |
119.9 |
| C01 |
C02 |
C03 |
H031 |
51.7 |
63.0 |
| CL1 |
C01 |
C06 |
H011 |
244.6 |
239.8 |
| C06 |
C01 |
C02 |
C03 |
46.6 |
57.0 |
| C02 |
C01 |
C06 |
H011 |
122.2 |
119.8 |
| C06 |
C01 |
C02 |
H021 |
289.0 |
297.1 |
| C10 |
C06 |
C01 |
O05 |
238.0 |
240.0 |
| C10 |
C06 |
C01 |
H061 |
118.8 |
120.1 |
| O05 |
C06 |
C01 |
H061 |
240.8 |
240.0 |
| O08 |
C02 |
C03 |
H021 |
118.8 |
120.2 |
| C03 |
C02 |
C01 |
C06 |
46.6 |
57.0 |
| C03 |
C02 |
C01 |
H011 |
168.6 |
176.8 |
| C01 |
C02 |
C03 |
H021 |
242.5 |
240.1 |
| C04 |
C03 |
C02 |
O09 |
124.0 |
119.9 |
| O09 |
C03 |
C02 |
H031 |
120.9 |
120.1 |
| C02 |
C03 |
O09 |
H091 |
180.0 |
300.0 |
| C02 |
C03 |
C04 |
O12 |
197.5 |
177.6 |
| C04 |
C03 |
C02 |
H031 |
244.9 |
240.0 |
| C02 |
C03 |
C04 |
H041 |
321.1 |
297.6 |
| C01 |
C06 |
C10 |
O05 |
124.2 |
119.9 |
| C10 |
C06 |
C01 |
H011 |
70.3 |
62.6 |
| C01 |
C06 |
C10 |
H061 |
241.6 |
240.0 |
| O05 |
C06 |
C10 |
H061 |
117.4 |
120.0 |
| O11 |
C10 |
C06 |
O05 |
69.3 |
62.6 |
| O11 |
C10 |
C06 |
H061 |
311.9 |
302.6 |
| H102 |
C10 |
O11 |
H101 |
121.3 |
120.0 |
| O05 |
C06 |
C01 |
H011 |
192.3 |
182.5 |
| C01 |
C06 |
O05 |
H061 |
118.8 |
120.0 |
| C10 |
C06 |
O05 |
H061 |
242.6 |
239.9 |
| C06 |
O05 |
C04 |
O12 |
167.7 |
178.9 |
| C06 |
O05 |
C04 |
H041 |
41.3 |
58.8 |
| C02 |
C03 |
O09 |
C04 |
120.6 |
119.7 |
| O09 |
C03 |
C02 |
H021 |
290.1 |
303.0 |
| C02 |
C03 |
O09 |
H031 |
239.6 |
240.0 |
| O09 |
C03 |
C04 |
O12 |
322.6 |
297.5 |
| C04 |
C03 |
O09 |
H031 |
119.0 |
120.3 |
| O09 |
C03 |
C04 |
H041 |
86.2 |
57.5 |
| C02 |
C03 |
C04 |
O09 |
234.9 |
240.1 |
| C04 |
C03 |
C02 |
H021 |
54.1 |
62.9 |
| C02 |
C03 |
C04 |
H031 |
115.3 |
119.9 |
| O09 |
C03 |
C04 |
H031 |
240.4 |
239.8 |
| C04 |
C03 |
O09 |
H091 |
59.5 |
180.4 |
| O05 |
C04 |
C03 |
O12 |
239.3 |
240.1 |
| O05 |
C04 |
C03 |
H041 |
115.8 |
120.0 |
| C03 |
C04 |
O12 |
C13 |
155.0 |
144.7 |
| O12 |
C04 |
C03 |
H041 |
236.4 |
240.0 |
| C01 |
C06 |
O05 |
C04 |
59.9 |
61.2 |
| O05 |
C04 |
C03 |
O09 |
201.9 |
177.5 |
| C03 |
C04 |
O05 |
O12 |
118.1 |
119.9 |
| O05 |
C04 |
C03 |
H031 |
321.6 |
297.7 |
| C03 |
C04 |
O05 |
H041 |
244.5 |
240.0 |
| O05 |
C04 |
O12 |
C13 |
268.0 |
264.6 |
| O12 |
C04 |
O05 |
H041 |
126.3 |
120.0 |
| O12 |
C04 |
C03 |
O09 |
322.6 |
297.5 |
| O12 |
C04 |
C03 |
H031 |
82.2 |
57.7 |
| C03 |
C04 |
O12 |
H041 |
122.0 |
120.0 |
| O05 |
C04 |
O12 |
H041 |
234.9 |
240.0 |
| C04 |
O12 |
C13 |
O16 |
95.2 |
306.2 |
| O19 |
C15 |
C14 |
O20 |
251.8 |
216.0 |
| O19 |
C15 |
C14 |
H141 |
8.5 |
339.6 |
| C13 |
O12 |
C04 |
H041 |
33.0 |
24.6 |
| C15 |
C13 |
O12 |
O16 |
247.6 |
242.1 |
| C18 |
C13 |
O12 |
O16 |
131.3 |
121.0 |
| O12 |
C13 |
O16 |
C17 |
262.3 |
267.1 |
| C14 |
C15 |
C13 |
O16 |
347.6 |
357.9 |
| C17 |
C14 |
C15 |
O20 |
237.0 |
241.8 |
| C15 |
C14 |
C17 |
O16 |
9.0 |
37.0 |
| C15 |
C14 |
C17 |
C21 |
133.2 |
155.5 |
| C17 |
C14 |
C15 |
H141 |
120.3 |
118.2 |
| C15 |
C14 |
C17 |
H171 |
254.5 |
278.5 |
| O20 |
C14 |
C15 |
H141 |
243.3 |
236.5 |
| C15 |
C14 |
O20 |
H201 |
180.0 |
185.8 |
| C04 |
O12 |
C13 |
C15 |
342.8 |
188.3 |
| O12 |
C13 |
C15 |
O16 |
96.8 |
119.5 |
| C18 |
C13 |
C15 |
O16 |
185.0 |
240.6 |
| C15 |
C13 |
O16 |
C17 |
17.4 |
26.6 |
| C15 |
C14 |
C17 |
O20 |
117.1 |
118.2 |
| C15 |
C14 |
C17 |
H141 |
241.0 |
241.7 |
| O20 |
C14 |
C17 |
H141 |
123.9 |
123.6 |
| C17 |
C14 |
O20 |
H201 |
298.9 |
298.5 |
| C13 |
O16 |
C17 |
C14 |
342.9 |
319.9 |
| C21 |
C17 |
C14 |
O16 |
124.3 |
118.5 |
| O16 |
C17 |
C14 |
H171 |
114.5 |
118.6 |
| C14 |
C17 |
C21 |
CL2 |
193.1 |
175.0 |
| C21 |
C17 |
C14 |
H171 |
238.7 |
237.1 |
| C14 |
C17 |
C21 |
H211 |
313.8 |
294.9 |
| C14 |
C17 |
C21 |
H212 |
72.4 |
55.0 |
| C15 |
C14 |
O20 |
C17 |
241.1 |
247.3 |
| C15 |
C14 |
O20 |
H141 |
116.3 |
123.6 |
| O20 |
C14 |
C17 |
O16 |
251.8 |
278.9 |
| O20 |
C14 |
C17 |
C21 |
16.1 |
37.4 |
| C17 |
C14 |
O20 |
H141 |
235.2 |
236.3 |
| O20 |
C14 |
C17 |
H171 |
137.4 |
160.3 |
| C04 |
O12 |
C13 |
C18 |
226.5 |
67.3 |
| O12 |
C13 |
C18 |
O16 |
284.8 |
238.9 |
| C15 |
C13 |
C18 |
O16 |
173.9 |
117.8 |
| C18 |
C13 |
O16 |
C17 |
191.7 |
145.9 |
| CL3 |
C18 |
C13 |
O16 |
279.0 |
51.6 |
| H182 |
C18 |
CL3 |
H181 |
124.6 |
119.9 |
| C14 |
C17 |
O16 |
C13 |
342.9 |
319.9 |
| C21 |
C17 |
O16 |
C13 |
214.3 |
201.4 |
| C13 |
O16 |
C17 |
H171 |
99.1 |
78.4 |
| O16 |
C17 |
C14 |
O20 |
251.8 |
278.9 |
| C14 |
C17 |
O16 |
C21 |
128.6 |
118.5 |
| O16 |
C17 |
C14 |
H141 |
127.9 |
155.3 |
| C14 |
C17 |
O16 |
H171 |
243.7 |
241.5 |
| O16 |
C17 |
C21 |
CL2 |
316.5 |
289.0 |
| C21 |
C17 |
O16 |
H171 |
115.2 |
123.0 |
| O16 |
C17 |
C21 |
H211 |
77.3 |
49.0 |
| O16 |
C17 |
C21 |
H212 |
195.8 |
169.1 |
| C21 |
C17 |
C14 |
O20 |
16.1 |
37.4 |
| C14 |
C17 |
C21 |
O16 |
236.6 |
245.9 |
| C21 |
C17 |
C14 |
H141 |
252.2 |
273.8 |
| C14 |
C17 |
C21 |
H171 |
122.1 |
122.9 |
| C13 |
O16 |
C17 |
C21 |
214.3 |
201.4 |
| O16 |
C17 |
C21 |
H171 |
245.6 |
237.0 |
| CL2 |
C21 |
C17 |
H211 |
239.3 |
240.0 |
| CL2 |
C21 |
C17 |
H212 |
120.7 |
120.0 |
| H211 |
C21 |
C17 |
H212 |
241.5 |
239.9 |
| CL2 |
C21 |
C17 |
O16 |
316.5 |
289.0 |
| CL2 |
C21 |
C17 |
H171 |
71.0 |
52.1 |
| C17 |
C21 |
CL2 |
H211 |
120.7 |
120.0 |
| C17 |
C21 |
CL2 |
H212 |
239.3 |
240.0 |
| H211 |
C21 |
CL2 |
H212 |
118.6 |
120.0 |
| C02 |
C01 |
H011 |
C06 |
236.5 |
240.4 |
| H011 |
C01 |
C02 |
C03 |
168.6 |
176.8 |
| H011 |
C01 |
C02 |
H021 |
51.0 |
57.0 |
| H011 |
C01 |
C06 |
O05 |
192.3 |
182.5 |
| H011 |
C01 |
C06 |
H061 |
311.5 |
302.5 |
| H021 |
C02 |
C01 |
C06 |
289.0 |
297.1 |
| C01 |
C02 |
H021 |
C03 |
118.9 |
119.6 |
| H021 |
C02 |
C01 |
H011 |
51.0 |
57.0 |
| H021 |
C02 |
C03 |
O09 |
290.1 |
303.0 |
| H021 |
C02 |
C03 |
C04 |
54.1 |
62.9 |
| H021 |
C02 |
C03 |
H031 |
169.2 |
182.9 |
| C02 |
C03 |
H031 |
O09 |
124.1 |
120.1 |
| C02 |
C03 |
H031 |
C04 |
246.0 |
240.3 |
| H031 |
C03 |
C02 |
H021 |
169.2 |
182.9 |
| C04 |
C03 |
H031 |
O09 |
238.2 |
239.8 |
| H031 |
C03 |
O09 |
H091 |
300.5 |
60.1 |
| H031 |
C03 |
C04 |
O12 |
82.2 |
57.7 |
| H031 |
C03 |
C04 |
H041 |
205.8 |
177.7 |
| H041 |
C04 |
C03 |
O09 |
86.2 |
57.5 |
| C03 |
C04 |
H041 |
O12 |
237.6 |
240.0 |
| H041 |
C04 |
C03 |
H031 |
205.8 |
177.7 |
| O05 |
C04 |
H041 |
O12 |
127.3 |
120.0 |
| H041 |
C04 |
O12 |
C13 |
33.0 |
24.6 |
| C01 |
C06 |
H061 |
O05 |
238.3 |
240.1 |
| H061 |
C06 |
C01 |
H011 |
311.5 |
302.5 |
| C10 |
C06 |
H061 |
O05 |
117.4 |
120.0 |
| H102 |
C10 |
C06 |
O05 |
188.7 |
182.6 |
| H102 |
C10 |
C06 |
H061 |
71.3 |
62.6 |
| O11 |
C10 |
H102 |
H101 |
238.1 |
240.0 |
| H102 |
C10 |
O11 |
H111 |
60.6 |
60.1 |
| H101 |
C10 |
C06 |
O05 |
310.0 |
302.6 |
| H101 |
C10 |
C06 |
H061 |
192.6 |
182.6 |
| O11 |
C10 |
H101 |
H102 |
121.9 |
120.0 |
| H101 |
C10 |
O11 |
H111 |
299.3 |
300.1 |
| C15 |
C14 |
H141 |
C17 |
118.8 |
112.7 |
| C15 |
C14 |
H141 |
O20 |
245.8 |
236.4 |
| C17 |
C14 |
H141 |
O20 |
127.0 |
123.7 |
| H141 |
C14 |
C17 |
O16 |
127.9 |
155.3 |
| H141 |
C14 |
C17 |
C21 |
252.2 |
273.8 |
| H141 |
C14 |
C17 |
H171 |
13.5 |
36.7 |
| H141 |
C14 |
O20 |
H201 |
63.7 |
62.2 |
| H151 |
C15 |
C14 |
C17 |
249.5 |
220.4 |
| H151 |
C15 |
C14 |
O20 |
12.5 |
338.6 |
| H151 |
C15 |
C14 |
H141 |
129.2 |
102.2 |
| H151 |
C15 |
C13 |
O16 |
98.8 |
116.6 |
| H171 |
C17 |
C14 |
O20 |
137.4 |
160.3 |
| C14 |
C17 |
H171 |
O16 |
115.8 |
114.1 |
| C14 |
C17 |
H171 |
C21 |
232.8 |
237.1 |
| H171 |
C17 |
C14 |
H141 |
13.5 |
36.7 |
| C21 |
C17 |
H171 |
O16 |
243.0 |
237.0 |
| H171 |
C17 |
C21 |
CL2 |
71.0 |
52.1 |
| H171 |
C17 |
C21 |
H211 |
191.7 |
172.1 |
| H171 |
C17 |
C21 |
H212 |
310.3 |
292.1 |
| H182 |
C18 |
C13 |
O16 |
36.7 |
171.6 |
| CL3 |
C18 |
H182 |
H181 |
233.6 |
240.1 |
| H181 |
C18 |
C13 |
O16 |
161.4 |
291.6 |
| CL3 |
C18 |
H181 |
H182 |
126.4 |
119.9 |
| H211 |
C21 |
C17 |
O16 |
77.3 |
49.0 |
| C17 |
C21 |
H211 |
CL2 |
235.5 |
240.0 |
| H211 |
C21 |
C17 |
H171 |
191.7 |
172.1 |
| C17 |
C21 |
H211 |
H212 |
117.7 |
120.1 |
| CL2 |
C21 |
H211 |
H212 |
242.2 |
240.0 |
| H212 |
C21 |
C17 |
O16 |
195.8 |
169.1 |
| C17 |
C21 |
H212 |
CL2 |
124.5 |
120.0 |
| H212 |
C21 |
C17 |
H171 |
310.3 |
292.1 |
| C17 |
C21 |
H212 |
H211 |
242.3 |
239.9 |
| CL2 |
C21 |
H212 |
H211 |
117.8 |
120.0 |
| H081 |
O08 |
C02 |
H021 |
61.3 |
299.7 |
| H091 |
O09 |
C03 |
H031 |
300.5 |
60.1 |
| H111 |
O11 |
C10 |
H102 |
60.6 |
60.1 |
| H111 |
O11 |
C10 |
H101 |
299.3 |
300.1 |
| H191 |
O19 |
C15 |
H151 |
60.4 |
298.9 |
| H201 |
O20 |
C14 |
H141 |
63.7 |
62.2 |