PDB Chemical Component G2P

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for G2P

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
PG O1G 1.461 1.617
PG O2G 1.458 1.501
PG O3G 1.548 1.616
PG O3B 1.642 1.615
O3B PB 1.659 1.613
PB O1B 1.466 1.615
PB O2B 1.439 1.499
PB C3A 1.776 1.807
C3A PA 1.792 1.808
C3A H3A1 1.115 1.096
C3A H3A2 1.115 1.097
PA O1A 1.477 1.617
PA O2A 1.467 1.501
PA O5' 1.582 1.616
O5' C5' 1.399 1.417
C5' C4' 1.550 1.522
C5' H5'1 1.115 1.094
C5' H5'2 1.115 1.095
C4' O4' 1.476 1.446
C4' C3' 1.532 1.525
C4' H4' 1.115 1.095
O4' C1' 1.456 1.441
C3' O3' 1.433 1.428
C3' C2' 1.535 1.516
C3' H3' 1.115 1.093
O3' HA 0.950 0.969
C2' O2' 1.410 1.413
C2' C1' 1.530 1.522
C2' H2' 1.115 1.097
O2' HB 0.950 0.973
C1' N9 1.500 1.461
C1' H1' 1.115 1.096
N9 C8 1.392 1.374
N9 C4 1.396 1.365
C8 N7 1.292 1.319
C8 H8 1.103 1.082
N7 C5 1.402 1.363
C5 C6 1.461 1.436
C5 C4 1.400 1.375
C6 O6 1.244 1.225
C6 N1 1.408 1.402
N1 C2 1.393 1.414
N1 H1 1.019 1.016
C2 N2 1.346 1.371
C2 N3 1.354 1.316
N2 H2N1 1.020 0.993
N2 H2N2 1.020 0.994
N3 C4 1.370 1.352
HO1 O1G 0.950 0.982
HO2 O3G 0.950 0.980
HO3 O1A 0.950 0.980
HO4 O1B 0.950 0.981

Bond Angles for G2P

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O1G PG O2G 110.3 114.5
O1G PG O3G 110.2 103.3
O1G PG O3B 108.4 103.7
O2G PG O3G 103.2 115.1
O2G PG O3B 115.4 114.8
O3G PG O3B 109.3 103.9
PG O3B PB 128.0 132.2
O3B PB O1B 109.9 103.8
O3B PB O2B 118.3 115.5
O3B PB C3A 102.7 103.2
O1B PB O2B 110.8 115.0
O1B PB C3A 104.5 103.4
O2B PB C3A 109.5 114.3
PB C3A PA 115.2 124.4
PB C3A H3A1 110.1 106.7
PB C3A H3A2 110.1 106.0
PA C3A H3A1 110.1 106.6
PA C3A H3A2 110.1 105.8
C3A PA O1A 114.0 102.8
C3A PA O2A 113.4 114.5
C3A PA O5' 93.7 104.4
H3A1 C3A H3A2 100.1 106.1
O1A PA O2A 116.5 114.6
O1A PA O5' 104.0 103.1
O2A PA O5' 112.5 115.8
PA O5' C5' 126.0 118.9
O5' C5' C4' 108.1 109.1
O5' C5' H5'1 112.7 108.8
O5' C5' H5'2 112.7 108.8
C4' C5' H5'1 112.7 110.5
C4' C5' H5'2 112.7 110.6
C5' C4' O4' 111.1 108.4
C5' C4' C3' 109.3 112.9
C5' C4' H4' 109.4 109.3
H5'1 C5' H5'2 97.7 109.1
O4' C4' C3' 108.3 106.4
O4' C4' H4' 109.4 107.6
C4' O4' C1' 110.0 108.8
C3' C4' H4' 109.4 112.1
C4' C3' O3' 107.3 108.8
C4' C3' C2' 104.1 102.3
C4' C3' H3' 109.8 114.5
O4' C1' C2' 106.4 106.1
O4' C1' N9 109.4 109.7
O4' C1' H1' 109.7 108.9
O3' C3' C2' 115.8 109.5
O3' C3' H3' 109.8 107.7
C3' O3' HA 107.3 106.4
C2' C3' H3' 109.8 113.8
C3' C2' O2' 112.1 113.1
C3' C2' C1' 106.6 101.5
C3' C2' H2' 109.6 110.3
O2' C2' C1' 109.3 111.9
O2' C2' H2' 109.6 108.9
C2' O2' HB 112.1 107.3
C1' C2' H2' 109.6 111.1
C2' C1' N9 111.9 114.0
C2' C1' H1' 109.7 112.6
N9 C1' H1' 109.7 105.3
C1' N9 C8 129.5 126.0
C1' N9 C4 126.6 127.3
C8 N9 C4 103.9 106.7
N9 C8 N7 115.8 112.4
N9 C8 H8 122.1 122.0
N9 C4 C5 106.3 104.9
N9 C4 N3 126.8 126.1
N7 C8 H8 122.1 125.5
C8 N7 C5 104.0 103.9
N7 C5 C6 131.1 128.7
N7 C5 C4 110.1 112.1
C6 C5 C4 118.8 119.2
C5 C6 O6 128.9 123.8
C5 C6 N1 112.1 110.8
C5 C4 N3 126.9 129.0
O6 C6 N1 119.0 125.4
C6 N1 C2 125.5 125.2
C6 N1 H1 117.3 117.3
C2 N1 H1 117.3 117.4
N1 C2 N2 117.9 115.3
N1 C2 N3 122.3 122.7
N2 C2 N3 119.8 122.0
C2 N2 H2N1 117.9 118.3
C2 N2 H2N2 119.8 118.3
C2 N3 C4 114.4 113.0
H2N1 N2 H2N2 122.3 123.4

Torsion Angles for G2P

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O2G PG O1G O3G 113.2 126.0
O2G PG O1G O3B 232.8 234.1
O3G PG O1G O3B 119.5 108.2
O1G PG O3B PB 182.3 174.3
O1G PG O2G O3G 242.3 240.4
O1G PG O2G O3B 123.2 119.8
O3G PG O2G O3B 240.9 239.4
O2G PG O3B PB 306.5 299.9
O1G PG O3G O2G 117.7 125.6
O1G PG O3G O3B 241.0 252.0
O2G PG O3G O3B 123.3 126.4
O3G PG O3B PB 62.2 66.5
O1G PG O3B O2G 235.8 234.3
O1G PG O3B O3G 120.1 107.8
O2G PG O3B O3G 244.3 233.4
PG O3B PB O1B 217.9 287.7
PG O3B PB O2B 346.4 54.6
PG O3B PB C3A 107.1 180.1
O1B PB O3B O2B 231.5 233.2
O1B PB O3B C3A 110.8 107.7
O2B PB O3B C3A 239.3 234.5
O3B PB C3A PA 211.6 58.3
O3B PB C3A H3A1 86.3 293.8
O3B PB C3A H3A2 336.8 181.0
O3B PB O1B O2B 132.6 127.1
O3B PB O1B C3A 250.4 252.5
O2B PB O1B C3A 117.9 125.4
O1B PB C3A PA 96.8 310.4
O1B PB C3A H3A1 331.5 185.8
O1B PB C3A H3A2 222.1 73.1
O3B PB O2B O1B 231.9 239.1
O3B PB O2B C3A 117.1 119.6
O1B PB O2B C3A 245.2 240.5
O2B PB C3A PA 338.1 184.5
O2B PB C3A H3A1 212.8 60.0
O2B PB C3A H3A2 103.4 307.2
O3B PB C3A O1B 114.8 107.9
O3B PB C3A O2B 233.5 233.8
O1B PB C3A O2B 118.7 125.8
PA C3A PB H3A1 125.3 124.5
PA C3A PB H3A2 234.7 237.3
PB C3A PA O1A 321.6 50.5
PB C3A PA O2A 98.0 175.4
PB C3A PA O5' 214.5 303.1
H3A1 C3A PB H3A2 109.5 112.8
PB C3A PA H3A1 234.8 235.4
PB C3A PA H3A2 125.3 122.7
H3A1 C3A PA H3A2 250.5 247.4
O1A PA C3A O2A 223.6 235.1
O1A PA C3A O5' 107.1 107.4
O2A PA C3A O5' 243.5 232.3
C3A PA O5' C5' 298.5 180.0
PB C3A H3A1 PA 128.1 134.9
PB C3A H3A1 H3A2 244.0 247.3
PA C3A H3A1 H3A2 116.0 112.5
H3A1 C3A PA O1A 86.8 175.1
H3A1 C3A PA O2A 223.3 300.0
H3A1 C3A PA O5' 339.8 67.7
PB C3A H3A2 PA 231.9 226.2
PB C3A H3A2 H3A1 115.9 113.2
PA C3A H3A2 H3A1 244.0 247.0
H3A2 C3A PA O1A 196.3 287.7
H3A2 C3A PA O2A 332.8 52.6
H3A2 C3A PA O5' 89.3 180.3
O1A PA C3A H3A1 86.8 175.1
O1A PA C3A H3A2 196.3 287.7
C3A PA O1A O2A 135.0 124.9
C3A PA O1A O5' 259.4 251.6
O2A PA O1A O5' 124.4 126.8
O1A PA O5' C5' 182.7 72.8
O2A PA C3A H3A1 223.3 300.0
O2A PA C3A H3A2 332.8 52.6
C3A PA O2A O1A 224.7 241.5
C3A PA O2A O5' 104.8 121.6
O1A PA O2A O5' 240.1 240.1
O2A PA O5' C5' 55.8 306.9
O5' PA C3A H3A1 339.8 67.7
O5' PA C3A H3A2 89.3 180.3
C3A PA O5' O1A 115.9 107.2
C3A PA O5' O2A 242.8 233.1
O1A PA O5' O2A 126.9 126.0
PA O5' C5' C4' 185.9 180.0
PA O5' C5' H5'1 60.7 300.6
PA O5' C5' H5'2 311.2 59.3
C4' C5' O5' H5'1 125.3 239.4
C4' C5' O5' H5'2 234.8 120.7
O5' C5' C4' O4' 17.9 61.9
O5' C5' C4' C3' 137.3 179.5
O5' C5' C4' H4' 257.0 305.0
H5'1 C5' O5' H5'2 109.5 241.3
O5' C5' C4' H5'1 234.7 119.6
O5' C5' C4' H5'2 125.3 240.5
H5'1 C5' C4' H5'2 250.5 120.9
O4' C4' C5' C3' 240.5 242.4
O4' C4' C5' H4' 120.8 116.9
C5' C4' O4' C1' 118.9 114.3
C3' C4' C5' H4' 240.3 234.6
C5' C4' C3' O3' 103.5 154.1
C5' C4' C3' C2' 226.7 269.8
C5' C4' C3' H3' 344.2 33.5
O5' C5' H5'1 C4' 122.7 240.3
O5' C5' H5'1 H5'2 241.3 118.5
C4' C5' H5'1 H5'2 118.6 238.2
H5'1 C5' C4' O4' 143.1 302.3
H5'1 C5' C4' C3' 262.6 60.0
H5'1 C5' C4' H4' 22.3 185.4
O5' C5' H5'2 C4' 237.3 119.7
O5' C5' H5'2 H5'1 118.7 241.5
C4' C5' H5'2 H5'1 241.4 121.8
H5'2 C5' C4' O4' 252.6 181.4
H5'2 C5' C4' C3' 12.1 299.1
H5'2 C5' C4' H4' 131.8 64.5
O4' C4' C5' H5'1 143.1 302.3
O4' C4' C5' H5'2 252.6 181.4
C5' C4' O4' C3' 120.0 121.7
C5' C4' O4' H4' 239.2 242.0
C3' C4' O4' H4' 119.1 120.3
O4' C4' C3' O3' 224.6 272.8
O4' C4' C3' C2' 347.9 28.6
O4' C4' C3' H3' 105.3 152.3
C4' O4' C1' C2' 14.0 343.1
C4' O4' C1' N9 253.0 219.4
C4' O4' C1' H1' 132.6 104.6
C3' C4' C5' H5'1 262.6 60.0
C3' C4' C5' H5'2 12.1 299.1
C5' C4' C3' O4' 238.9 241.2
C5' C4' C3' H4' 119.7 123.9
O4' C4' C3' H4' 240.9 242.7
C3' C4' O4' C1' 358.9 352.6
O3' C3' C4' C2' 236.8 244.2
O3' C3' C4' H3' 119.3 120.5
C4' C3' O3' HA 180.0 262.8
C2' C3' C4' H3' 242.5 236.3
C4' C3' C2' O2' 260.8 202.6
C4' C3' C2' C1' 20.3 322.6
C4' C3' C2' H2' 138.8 80.4
H4' C4' C5' H5'1 22.3 185.4
H4' C4' C5' H5'2 131.8 64.5
C5' C4' H4' O4' 121.9 117.4
C5' C4' H4' C3' 240.3 234.1
O4' C4' H4' C3' 118.5 116.6
H4' C4' O4' C1' 239.8 232.3
H4' C4' C3' O3' 343.8 30.1
H4' C4' C3' C2' 107.0 145.9
H4' C4' C3' H3' 224.5 269.6
C1' O4' C4' C3' 358.9 352.6
C1' O4' C4' H4' 239.8 232.3
C3' C2' C1' O4' 338.5 34.2
O2' C2' C1' O4' 99.8 155.0
O4' C1' C2' H2' 220.0 277.0
C2' C1' O4' N9 121.0 123.7
C2' C1' O4' H1' 241.4 238.5
N9 C1' O4' H1' 120.4 114.8
O4' C1' N9 C8 60.8 32.9
O4' C1' N9 C4 241.2 212.9
O3' C3' C4' H4' 343.8 30.1
C4' C3' O3' C2' 115.7 111.1
C4' C3' O3' H3' 240.7 235.4
C2' C3' O3' H3' 125.0 124.3
O3' C3' C2' O2' 18.3 317.9
O3' C3' C2' C1' 137.8 77.9
O3' C3' C2' H2' 256.3 195.7
C2' C3' C4' H4' 107.0 145.9
C4' C3' C2' O3' 242.5 244.7
C4' C3' C2' H3' 117.5 124.1
O4' C1' C2' C3' 338.5 34.2
O3' C3' C2' H3' 235.0 239.4
C2' C3' O3' HA 64.3 151.7
O2' C2' C3' C1' 240.4 240.0
O2' C2' C3' H2' 122.0 122.2
C3' C2' O2' HB 180.0 296.5
C1' C2' C3' H2' 241.5 242.2
C3' C2' C1' N9 97.9 155.2
C3' C2' C1' H1' 219.9 275.1
H3' C3' C4' H4' 224.5 269.6
C4' C3' H3' O3' 117.8 121.1
C4' C3' H3' C2' 246.2 242.7
O3' C3' H3' C2' 128.4 121.6
H3' C3' O3' HA 299.3 27.5
H3' C3' C2' O2' 143.3 78.5
H3' C3' C2' C1' 262.9 198.5
H3' C3' C2' H2' 21.3 316.3
HA O3' C3' C2' 64.3 151.7
HA O3' C3' H3' 299.3 27.5
O4' C1' C2' O2' 99.8 155.0
O2' C2' C3' H3' 143.3 78.5
C3' C2' O2' C1' 118.0 113.8
C3' C2' O2' H2' 238.0 237.0
C1' C2' O2' H2' 120.1 123.1
O2' C2' C1' N9 219.2 276.0
O2' C2' C1' H1' 341.3 35.9
O4' C1' C2' N9 240.6 239.1
O4' C1' C2' H1' 118.6 119.1
C1' C2' C3' H3' 262.9 198.5
C3' C2' C1' O2' 238.6 239.2
C3' C2' C1' H2' 118.5 117.3
O2' C2' C1' H2' 239.9 238.1
C1' C2' O2' HB 62.0 182.7
N9 C1' C2' H1' 238.0 240.1
C2' C1' N9 C8 303.2 274.0
C2' C1' N9 C4 123.6 93.9
H2' C2' C3' H3' 21.3 316.3
C3' C2' H2' O2' 123.5 124.7
C3' C2' H2' C1' 243.4 248.3
O2' C2' H2' C1' 119.9 123.6
H2' C2' O2' HB 302.0 59.5
H2' C2' C1' N9 339.4 37.9
H2' C2' C1' H1' 101.4 157.8
HB O2' C2' C1' 62.0 182.7
HB O2' C2' H2' 302.0 59.5
O4' C1' N9 C2' 117.6 118.9
O4' C1' N9 H1' 239.6 242.9
N9 C1' C2' H2' 339.4 37.9
C2' C1' N9 H1' 122.0 124.0
C8 N9 C1' C4 179.6 180.0
C1' N9 C8 N7 180.5 180.0
C1' N9 C8 H8 0.5 0.0
C1' N9 C4 C5 179.6 180.0
C1' N9 C4 N3 359.7 0.1
O4' C1' H1' C2' 243.5 242.5
O4' C1' H1' N9 120.2 117.7
H1' C1' C2' H2' 101.4 157.8
C2' C1' H1' N9 236.7 235.1
H1' C1' N9 C8 181.2 150.0
H1' C1' N9 C4 1.6 330.0
C8 N9 C1' H1' 181.2 150.0
C1' N9 C8 C4 180.3 180.0
C8 N9 C4 C5 359.9 359.9
C8 N9 C4 N3 180.1 180.0
N7 C8 N9 H8 180.0 180.0
N9 C8 N7 C5 359.9 360.0
C4 N9 C1' H1' 1.6 330.0
C1' N9 C4 C8 179.7 180.0
C4 N9 C8 N7 0.1 0.0
C4 N9 C8 H8 180.1 180.0
N7 C5 C4 N9 0.0 0.1
C6 C5 C4 N9 180.2 180.1
C5 C4 N9 N3 179.9 179.9
C2 N3 C4 N9 180.0 180.0
N7 C8 N9 C4 0.1 0.0
N9 C8 N7 H8 180.0 180.0
C8 N7 C5 C6 179.9 180.0
C8 N7 C5 C4 0.1 360.0
H8 C8 N9 C4 180.1 180.0
N9 C8 H8 N7 180.0 180.0
H8 C8 N7 C5 179.9 180.0
N9 C4 C5 N7 0.0 0.1
C5 N7 C8 H8 179.9 180.0
C6 C5 N7 C4 179.8 180.0
N7 C5 C6 O6 0.1 360.0
N7 C5 C6 N1 180.0 180.0
N7 C5 C4 N3 179.9 180.0
N9 C4 C5 C6 180.2 180.1
N7 C5 C6 C4 180.2 180.0
C6 C5 C4 N3 0.0 360.0
O6 C6 C5 N1 180.1 180.0
C5 C6 N1 C2 0.2 360.0
C5 C6 N1 H1 180.2 180.0
N9 C4 C5 N3 180.1 180.1
N7 C5 C4 C6 179.8 180.0
C4 C5 C6 O6 179.9 180.0
C4 C5 C6 N1 359.8 0.0
C2 N3 C4 C5 0.1 0.1
O6 C6 C5 C4 179.9 180.0
C5 C6 O6 N1 179.9 180.0
O6 C6 N1 C2 180.1 180.0
O6 C6 N1 H1 0.1 0.0
N1 C6 C5 C4 359.8 0.0
C5 C6 N1 O6 180.1 180.0
C2 N1 C6 H1 180.0 180.0
C6 N1 C2 N2 180.0 180.0
C6 N1 C2 N3 360.0 0.1
C6 N1 C2 H1 180.0 180.0
N2 C2 N1 N3 180.0 179.9
N1 C2 N2 H2N1 180.0 212.3
N1 C2 N2 H2N2 0.0 32.2
N1 C2 N3 C4 359.9 359.9
C6 N1 H1 C2 180.0 180.0
H1 N1 C2 N2 359.9 360.0
H1 N1 C2 N3 180.0 180.0
N2 C2 N1 H1 359.9 360.0
N1 C2 N2 N3 180.0 180.1
N2 C2 N3 C4 179.9 180.0
H2N1 N2 C2 H2N2 180.0 180.1
N9 C4 N3 C2 180.0 180.0
C5 C4 N3 C2 0.1 0.1
N3 C2 N1 H1 180.0 180.0
N1 C2 N3 N2 180.0 179.9
N3 C2 N2 H2N1 360.0 32.3
N3 C2 N2 H2N2 180.0 212.2
H2N1 N2 C2 N3 360.0 32.3
C2 N2 H2N1 H2N2 180.0 179.9
H2N2 N2 C2 N3 180.0 212.2
C2 N2 H2N2 H2N1 180.0 180.1
N9 C4 N3 C5 179.8 179.9