PDB Chemical Component G2L

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for G2L

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
OP3 P   1.617
OP3 HOP3   0.981
P OP1 1.480 1.501
P OP2 1.479 1.617
P O5' 1.623 1.619
OP2 HOP2 0.950 0.980
O5' C5' 1.418 1.417
C5' C4' 1.545 1.517
C5' H5' 1.087 1.091
C5' H5'' 1.090 1.091
C4' O4' 1.420 1.437
C4' C3' 1.539 1.519
C4' H4' 1.090 1.097
O4' C1' 1.426 1.444
C3' O3' 1.423 1.412
C3' C2' 1.531 1.517
C3' H3' 1.089 1.097
O3' CA' 1.415 1.419
C2' O2' 1.427 1.426
C2' C1' 1.514 1.529
C2' H2' 1.089 1.095
O2' HO2' 0.950 0.974
C1' N9 1.481 1.464
C1' H1' 1.089 1.095
N9 C8 1.364 1.374
N9 C4 1.371 1.365
C8 N7 1.304 1.318
C8 H8 1.067 1.082
N7 C5 1.391 1.364
C5 C6 1.434 1.437
C5 C4 1.380 1.374
C6 O6 1.230 1.225
C6 N1 1.393 1.402
N1 C2 1.383 1.415
N1 H1 1.011 1.016
C2 N2 1.328 1.371
C2 N3 1.340 1.316
N2 H21 1.009 0.994
N2 H22 1.013 0.994
N3 C4 1.360 1.352
CA' CB' 1.530 1.516
CA' HA'1 1.090 1.095
CA' HA'2 1.089 1.094
CB' OC' 1.418 1.422
CB' HB'1 1.090 1.094
CB' HB'2 1.091 1.095
OC' CD' 1.416 1.421
CD' HD'1 1.090 1.092
CD' HD'2 1.090 1.092
CD' HD'3 1.091 1.093

Bond Angles for G2L

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
P OP3 HOP3   118.9
OP3 P OP1   115.3
OP3 P OP2   103.3
OP3 P O5'   103.7
OP1 P OP2 118.9 115.0
OP1 P O5' 108.8 115.0
OP2 P O5' 107.8 102.9
P OP2 HOP2 83.5 119.0
P O5' C5' 124.9 118.5
O5' C5' C4' 110.8 108.7
O5' C5' H5' 110.9 109.1
O5' C5' H5'' 108.3 109.2
C4' C5' H5' 110.0 110.1
C4' C5' H5'' 108.6 110.1
C5' C4' O4' 111.8 109.8
C5' C4' C3' 115.1 113.5
C5' C4' H4' 107.8 108.7
H5' C5' H5'' 108.0 109.6
O4' C4' C3' 107.8 105.2
O4' C4' H4' 106.1 108.3
C4' O4' C1' 110.9 108.3
C3' C4' H4' 107.9 111.2
C4' C3' O3' 113.5 112.2
C4' C3' C2' 103.0 102.2
C4' C3' H3' 111.4 110.2
O4' C1' C2' 107.1 107.6
O4' C1' N9 107.6 109.4
O4' C1' H1' 108.2 108.2
O3' C3' C2' 108.9 113.5
O3' C3' H3' 111.1 109.0
C3' O3' CA' 115.7 111.3
C2' C3' H3' 108.4 109.5
C3' C2' O2' 111.3 111.2
C3' C2' C1' 104.4 102.9
C3' C2' H2' 111.6 112.6
O3' CA' CB' 108.2 109.1
O3' CA' HA'1 110.2 108.2
O3' CA' HA'2 110.1 108.2
O2' C2' C1' 104.2 109.3
O2' C2' H2' 114.6 106.9
C2' O2' HO2' 111.3 107.3
C1' C2' H2' 110.0 114.0
C2' C1' N9 118.4 113.7
C2' C1' H1' 108.2 112.6
N9 C1' H1' 107.0 105.2
C1' N9 C8 129.6 126.1
C1' N9 C4 125.7 127.3
C8 N9 C4 104.7 106.7
N9 C8 N7 115.0 112.4
N9 C8 H8 121.1 122.0
N9 C4 C5 106.9 104.9
N9 C4 N3 126.0 126.0
N7 C8 H8 123.9 125.5
C8 N7 C5 103.5 103.9
N7 C5 C6 130.5 128.7
N7 C5 C4 109.9 112.1
C6 C5 C4 119.6 119.2
C5 C6 O6 128.8 123.8
C5 C6 N1 112.3 110.8
C5 C4 N3 127.1 129.0
O6 C6 N1 118.9 125.4
C6 N1 C2 124.1 125.3
C6 N1 H1 116.7 117.4
C2 N1 H1 119.2 117.3
N1 C2 N2 117.2 115.4
N1 C2 N3 124.0 122.7
N2 C2 N3 118.9 122.0
C2 N2 H21 119.5 118.3
C2 N2 H22 120.0 118.2
C2 N3 C4 112.9 113.0
H21 N2 H22 120.5 123.5
CB' CA' HA'1 109.7 111.1
CB' CA' HA'2 108.7 110.5
CA' CB' OC' 109.8 109.0
CA' CB' HB'1 108.8 111.1
CA' CB' HB'2 109.2 110.5
HA'1 CA' HA'2 109.9 109.7
OC' CB' HB'1 109.4 108.2
OC' CB' HB'2 110.3 108.3
CB' OC' CD' 112.4 111.5
HB'1 CB' HB'2 109.3 109.7
OC' CD' HD'1 110.0 109.6
OC' CD' HD'2 109.0 109.5
OC' CD' HD'3 110.1 108.9
HD'1 CD' HD'2 109.0 110.1
HD'1 CD' HD'3 109.7 109.3
HD'2 CD' HD'3 109.0 109.4

Torsion Angles for G2L

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
OP1 P OP3 OP2   126.2
OP1 P OP3 O5'   233.4
OP2 P OP3 O5'   107.1
OP3 P OP2 HOP2   78.5
OP3 P O5' C5'   53.2
HOP3 OP3 P OP1   48.7
HOP3 OP3 P OP2   282.5
HOP3 OP3 P O5'   175.4
OP1 P OP3 HOP3   48.7
OP3 P OP1 OP2   240.0
OP3 P OP1 O5'   120.7
OP2 P OP1 O5' 236.1 240.7
OP1 P OP2 HOP2 300.6 312.0
OP1 P O5' C5' 22.1 180.0
OP2 P OP3 HOP3   282.5
OP3 P OP2 OP1   126.5
OP3 P OP2 O5'   252.3
OP1 P OP2 O5' 124.4 125.8
OP2 P O5' C5' 152.4 305.8
O5' P OP3 HOP3   175.4
OP3 P O5' OP1   233.1
OP3 P O5' OP2   107.4
OP1 P O5' OP2 229.8 234.2
O5' P OP2 HOP2 176.2 186.2
P O5' C5' C4' 240.5 180.0
P O5' C5' H5' 3.0 300.1
P O5' C5' H5'' 121.4 59.9
HOP2 OP2 P O5' 176.2 186.2
C4' C5' O5' H5' 237.5 239.9
C4' C5' O5' H5'' 119.1 120.2
O5' C5' C4' O4' 291.4 62.1
O5' C5' C4' C3' 54.8 179.5
O5' C5' C4' H4' 175.2 303.8
H5' C5' O5' H5'' 241.6 240.3
O5' C5' C4' H5' 123.1 119.5
O5' C5' C4' H5'' 241.1 240.4
H5' C5' C4' H5'' 118.1 120.9
O4' C4' C5' C3' 236.6 242.6
O4' C4' C5' H4' 116.2 118.3
C5' C4' O4' C1' 131.6 148.9
C3' C4' C5' H4' 239.6 235.7
C5' C4' C3' O3' 98.2 80.9
C5' C4' C3' C2' 215.8 202.9
C5' C4' C3' H3' 331.8 319.3
O5' C5' H5' C4' 237.0 240.8
O5' C5' H5' H5'' 118.6 119.5
C4' C5' H5' H5'' 241.6 238.7
H5' C5' C4' O4' 168.4 302.6
H5' C5' C4' C3' 291.8 60.1
H5' C5' C4' H4' 52.1 184.3
O5' C5' H5'' C4' 120.5 119.3
O5' C5' H5'' H5' 239.8 240.5
C4' C5' H5'' H5' 119.3 121.3
H5'' C5' C4' O4' 50.3 181.7
H5'' C5' C4' C3' 173.7 299.1
H5'' C5' C4' H4' 294.1 63.4
O4' C4' C5' H5' 168.4 302.6
O4' C4' C5' H5'' 50.3 181.7
C5' C4' O4' C3' 127.4 122.5
C5' C4' O4' H4' 242.7 241.5
C3' C4' O4' H4' 115.3 119.0
O4' C4' C3' O3' 223.7 201.0
O4' C4' C3' C2' 341.4 323.0
O4' C4' C3' H3' 97.3 79.3
C4' O4' C1' C2' 12.5 355.0
C4' O4' C1' N9 244.2 231.0
C4' O4' C1' H1' 128.9 116.9
C3' C4' C5' H5' 291.8 60.1
C3' C4' C5' H5'' 173.7 299.1
C5' C4' C3' O4' 234.5 239.9
C5' C4' C3' H4' 120.3 122.9
O4' C4' C3' H4' 245.9 243.0
C3' C4' O4' C1' 4.2 26.4
O3' C3' C4' C2' 242.4 238.1
O3' C3' C4' H3' 126.4 121.7
C4' C3' O3' CA' 280.6 175.2
C2' C3' C4' H3' 244.0 243.6
C4' C3' C2' O2' 273.4 275.9
C4' C3' C2' C1' 25.2 32.8
C4' C3' C2' H2' 144.0 156.0
H4' C4' C5' H5' 52.1 184.3
H4' C4' C5' H5'' 294.1 63.4
C5' C4' H4' O4' 119.9 119.3
C5' C4' H4' C3' 235.2 234.4
O4' C4' H4' C3' 115.3 115.1
H4' C4' O4' C1' 248.9 267.4
H4' C4' C3' O3' 337.8 318.0
H4' C4' C3' C2' 95.5 79.9
H4' C4' C3' H3' 211.5 196.3
C1' O4' C4' C3' 4.2 26.4
C1' O4' C4' H4' 248.9 267.4
C3' C2' C1' O4' 336.2 341.9
O2' C2' C1' O4' 93.0 100.1
O4' C1' C2' H2' 216.3 219.6
C2' C1' O4' N9 128.3 124.0
C2' C1' O4' H1' 243.5 238.0
N9 C1' O4' H1' 115.3 114.1
O4' C1' N9 C8 58.0 33.9
O4' C1' N9 C4 238.1 213.8
O3' C3' C4' H4' 337.8 318.0
C4' C3' O3' C2' 114.1 115.2
C4' C3' O3' H3' 233.5 237.6
C2' C3' O3' H3' 119.4 122.4
O3' C3' C2' O2' 34.2 36.9
O3' C3' C2' C1' 146.1 153.8
O3' C3' C2' H2' 264.9 276.9
C3' O3' CA' CB' 179.5 179.0
C3' O3' CA' HA'1 299.4 300.0
C3' O3' CA' HA'2 60.8 58.8
C2' C3' C4' H4' 95.5 79.9
C4' C3' C2' O3' 239.2 239.0
C4' C3' C2' H3' 118.1 116.9
O4' C1' C2' C3' 336.2 341.9
O3' C3' C2' H3' 238.9 237.9
C2' C3' O3' CA' 166.4 60.0
O2' C2' C3' C1' 248.2 243.2
O2' C2' C3' H2' 129.4 120.0
C3' C2' O2' HO2' 180.0 167.5
C1' C2' C3' H2' 241.2 236.8
C3' C2' C1' N9 97.9 103.2
C3' C2' C1' H1' 219.7 222.7
H3' C3' C4' H4' 211.5 196.3
C4' C3' H3' O3' 127.7 123.5
C4' C3' H3' C2' 247.4 248.3
O3' C3' H3' C2' 119.7 124.7
H3' C3' O3' CA' 47.1 297.6
H3' C3' C2' O2' 155.3 159.0
H3' C3' C2' C1' 267.1 275.9
H3' C3' C2' H2' 25.9 39.0
CA' O3' C3' C2' 166.4 60.0
CA' O3' C3' H3' 47.1 297.6
CB' CA' O3' HA'1 240.0 239.0
CB' CA' O3' HA'2 118.7 120.2
O3' CA' CB' OC' 69.3 299.2
O3' CA' CB' HB'1 189.0 180.0
O3' CA' CB' HB'2 308.2 58.0
HA'1 CA' O3' HA'2 238.6 241.2
O4' C1' C2' O2' 93.0 100.1
O2' C2' C3' H3' 155.3 159.0
C3' C2' O2' C1' 112.0 112.9
C3' C2' O2' H2' 232.2 236.7
C1' C2' O2' H2' 120.2 123.8
O2' C2' C1' N9 214.8 221.5
O2' C2' C1' H1' 336.5 340.9
O4' C1' C2' N9 238.3 238.7
O4' C1' C2' H1' 116.5 119.2
C1' C2' C3' H3' 267.1 275.9
C3' C2' C1' O2' 243.1 241.8
C3' C2' C1' H2' 119.9 122.2
O2' C2' C1' H2' 236.7 240.5
C1' C2' O2' HO2' 68.0 54.7
N9 C1' C2' H1' 238.2 240.5
C2' C1' N9 C8 296.5 273.6
C2' C1' N9 C4 116.6 93.5
H2' C2' C3' H3' 25.9 39.0
C3' C2' H2' O2' 127.6 122.5
C3' C2' H2' C1' 244.6 243.3
O2' C2' H2' C1' 116.9 120.8
H2' C2' O2' HO2' 307.8 290.8
H2' C2' C1' N9 338.0 341.0
H2' C2' C1' H1' 99.8 100.5
HO2' O2' C2' C1' 68.0 54.7
HO2' O2' C2' H2' 307.8 290.8
O4' C1' N9 C2' 121.5 120.3
O4' C1' N9 H1' 243.9 244.0
N9 C1' C2' H2' 338.0 341.0
C2' C1' N9 H1' 122.4 123.6
C8 N9 C1' C4 179.9 180.1
C1' N9 C8 N7 180.1 180.0
C1' N9 C8 H8 0.2 360.0
C1' N9 C4 C5 179.9 180.1
C1' N9 C4 N3 359.8 0.1
O4' C1' H1' C2' 244.2 241.2
O4' C1' H1' N9 115.6 116.8
H1' C1' C2' H2' 99.8 100.5
C2' C1' H1' N9 231.4 235.7
H1' C1' N9 C8 174.1 150.0
H1' C1' N9 C4 354.2 329.9
C8 N9 C1' H1' 174.1 150.0
C1' N9 C8 C4 180.1 179.9
C8 N9 C4 C5 359.9 360.0
C8 N9 C4 N3 179.9 180.0
N7 C8 N9 H8 179.9 180.0
N9 C8 N7 C5 0.1 360.0
C4 N9 C1' H1' 354.2 329.9
C1' N9 C4 C8 179.9 180.1
C4 N9 C8 N7 360.0 0.0
C4 N9 C8 H8 180.1 180.0
N7 C5 C4 N9 0.1 360.0
C6 C5 C4 N9 180.1 180.1
C5 C4 N9 N3 180.1 180.0
C2 N3 C4 N9 180.2 180.0
N7 C8 N9 C4 360.0 0.0
N9 C8 N7 H8 180.1 180.0
C8 N7 C5 C6 179.9 179.9
C8 N7 C5 C4 359.9 0.0
H8 C8 N9 C4 180.1 180.0
N9 C8 H8 N7 179.9 180.0
H8 C8 N7 C5 180.0 180.0
N9 C4 C5 N7 0.1 360.0
C5 N7 C8 H8 180.0 180.0
C6 C5 N7 C4 180.0 179.9
N7 C5 C6 O6 359.8 0.0
N7 C5 C6 N1 179.8 180.0
N7 C5 C4 N3 180.2 180.0
N9 C4 C5 C6 180.1 180.1
N7 C5 C6 C4 180.0 180.1
C6 C5 C4 N3 0.1 0.1
O6 C6 C5 N1 180.0 180.0
C5 C6 N1 C2 0.0 0.0
C5 C6 N1 H1 179.9 180.0
N9 C4 C5 N3 179.9 180.0
N7 C5 C4 C6 180.0 179.9
C4 C5 C6 O6 179.8 179.9
C4 C5 C6 N1 359.8 359.9
C2 N3 C4 C5 0.1 360.0
O6 C6 C5 C4 179.8 179.9
C5 C6 O6 N1 180.0 180.0
O6 C6 N1 C2 180.0 180.1
O6 C6 N1 H1 359.9 0.0
N1 C6 C5 C4 359.8 359.9
C5 C6 N1 O6 180.0 180.0
C2 N1 C6 H1 180.1 180.0
C6 N1 C2 N2 180.1 180.0
C6 N1 C2 N3 0.2 360.0
C6 N1 C2 H1 179.9 180.0
N2 C2 N1 N3 179.8 180.0
N1 C2 N2 H21 180.1 213.2
N1 C2 N2 H22 0.0 33.2
N1 C2 N3 C4 359.7 360.0
C6 N1 H1 C2 180.1 180.0
H1 N1 C2 N2 0.2 0.0
H1 N1 C2 N3 180.3 180.0
N2 C2 N1 H1 0.2 0.0
N1 C2 N2 N3 180.1 180.0
N2 C2 N3 C4 179.9 180.0
H21 N2 C2 H22 180.0 180.0
N9 C4 N3 C2 180.2 180.0
C5 C4 N3 C2 0.1 360.0
N3 C2 N1 H1 180.3 180.0
N1 C2 N3 N2 179.8 180.0
N3 C2 N2 H21 359.9 33.2
N3 C2 N2 H22 179.9 213.2
H21 N2 C2 N3 359.9 33.2
C2 N2 H21 H22 180.0 180.0
H22 N2 C2 N3 179.9 213.2
C2 N2 H22 H21 180.0 180.0
N9 C4 N3 C5 180.1 180.0
O3' CA' CB' HA'1 120.3 119.2
O3' CA' CB' HA'2 240.5 241.2
HA'1 CA' CB' HA'2 120.2 122.0
OC' CB' CA' HB'1 240.3 119.1
OC' CB' CA' HB'2 121.1 241.1
CA' CB' OC' CD' 180.8 179.0
HB'1 CB' CA' HB'2 240.8 122.0
O3' CA' HA'1 CB' 241.0 240.3
O3' CA' HA'1 HA'2 121.5 117.8
CB' CA' HA'1 HA'2 240.5 237.5
HA'1 CA' CB' OC' 309.0 180.0
HA'1 CA' CB' HB'1 68.7 60.8
HA'1 CA' CB' HB'2 187.9 298.9
O3' CA' HA'2 CB' 118.3 119.3
O3' CA' HA'2 HA'1 238.4 242.2
CB' CA' HA'2 HA'1 120.1 122.8
HA'2 CA' CB' OC' 188.8 58.0
HA'2 CA' CB' HB'1 308.5 298.8
HA'2 CA' CB' HB'2 67.7 176.9
OC' CB' CA' HA'1 309.0 180.0
OC' CB' CA' HA'2 188.8 58.0
CA' CB' OC' HB'1 119.3 239.0
CA' CB' OC' HB'2 239.6 120.2
HB'1 CB' OC' HB'2 120.3 241.2
CB' OC' CD' HD'1 300.2 278.7
CB' OC' CD' HD'2 180.8 157.9
CB' OC' CD' HD'3 61.3 38.3
HB'1 CB' CA' HA'1 68.7 60.8
HB'1 CB' CA' HA'2 308.5 298.8
CA' CB' HB'1 OC' 240.1 119.7
CA' CB' HB'1 HB'2 119.1 237.5
OC' CB' HB'1 HB'2 239.1 117.9
HB'1 CB' OC' CD' 61.5 300.0
HB'2 CB' CA' HA'1 187.9 298.9
HB'2 CB' CA' HA'2 67.7 176.9
CA' CB' HB'2 OC' 120.7 240.7
CA' CB' HB'2 HB'1 241.1 122.9
OC' CB' HB'2 HB'1 120.4 242.2
HB'2 CB' OC' CD' 301.2 58.8
CD' OC' CB' HB'1 61.5 300.0
CD' OC' CB' HB'2 301.2 58.8
HD'1 CD' OC' HD'2 119.4 120.8
HD'1 CD' OC' HD'3 238.9 240.4
HD'2 CD' OC' HD'3 119.5 119.6
OC' CD' HD'1 HD'2 240.6 239.5
OC' CD' HD'1 HD'3 121.3 119.3
HD'2 CD' HD'1 HD'3 240.8 239.8
OC' CD' HD'2 HD'1 120.1 120.5
OC' CD' HD'2 HD'3 239.8 240.7
HD'1 CD' HD'2 HD'3 119.7 120.1
OC' CD' HD'3 HD'1 238.7 240.3
OC' CD' HD'3 HD'2 119.5 119.7
HD'1 CD' HD'3 HD'2 240.8 239.4