Atom Nomenclature for G26

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for G26

Atom Name (V3) Atom Name (V2)
C C
C1 C1
C2 C2
C3 C3
C4 C4
C5 C5
C6 C6
C7 C7
C8 C8
C9 C9
C10 C10
C11 C11
C12 C12
C13 C13
C14 C14
C15 C15
C16 C16
C17 C17
C18 C18
C19 C19
C20 C20
C21 C21
C22 C22
C23 C23
C24 C24
C25 C25
C26 C26
C27 C27
C28 C28
C29 C29
C30 C30
C31 C31
N N
N1 N1
N2 N2
N3 N3
O O
O1 O1
O2 O2
O4 O4
S S
H1 H1
H2 H2
H3 H3
H51 1H5
H52 2H5
H53 3H5
H61 1H6
H62 2H6
H63 3H6
H8 H8
H91 1H9
H92 2H9
H101 1H10
H102 2H10
H121 1H12
H122 2H12
H13 H13
H15 H15
H16 H16
H17 H17
H18 H18
H191 1H19
H192 2H19
H20 H20
H21 H21
H22 H22
H24 H24
H25 H25
H26 H26
H27 H27
H28 H28
H29 H29
H31 H31
HN HN
HN1 HN1
HN2 HN2
HN3 HN3
HO4 HO4