Atom Nomenclature for G24

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for G24

Atom Name (V3) Atom Name (V2)
CAF CAF
CAB CAB
CAC CAC
CAD CAD
CAH CAH
CAG CAG
CAQ CAQ
CAP CAP
CAO CAO
CBA CBA
OBC OBC
CAZ CAZ
CAY CAY
CAN CAN
CAM CAM
CAL CAL
CAX CAX
CBB CBB
CAW CAW
CAK CAK
CAE CAE
CAJ CAJ
CAV CAV
OAU OAU
CAT CAT
CAS CAS
OAR OAR
OAI OAI
HAF HAF
HAB HAB
HAC HAC
HAD HAD
HAH HAH
HAQ1 1HAQ
HAQ2 2HAQ
HAO HAO
HBC HBC
HAZ HAZ
HAY HAY
HAM1 1HAM
HAM2 2HAM
HBB1 1HBB
HBB2 2HBB
HBB3 3HBB
HAW HAW
HAE1 1HAE
HAE2 2HAE
HAE3 3HAE
HAJ HAJ
HAT1 1HAT
HAT2 2HAT
HAR HAR