Atom Nomenclature for G1O

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for G1O

Atom Name (V3) Atom Name (V2)
CAA CAA
CAB CAB
CAC CAC
CAD CAD
CAE CAE
CAF CAF
CAG CAG
CAH CAH
CAI CAI
NAJ NAJ
OAK OAK
NAL NAL
CAM CAM
HAA HAA
HAB HAB
HAC HAC
HAI HAI
HNAJ HNAJ
HNAL HNAL
HNAA HNAA
HAM HAM
HAMA HAMA
HAMB HAMB