Atom Nomenclature for G1L

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for G1L

Atom Name (V3) Atom Name (V2)
F23 F23
C20 C20
F21 F21
F22 F22
C3 C3
C2 C2
C1 C1
C4 C4
C5 C5
C6 C6
N11 N11
C12 C12
O18 O18
C13 C13
C14 C14
C15 C15
C16 C16
CL17 CL17
H2 H2
H1 H1
H4 H4
H5 H5
HN11 HN11
H141 1H14
H142 2H14
H143 3H14
H151 1H15
H152 2H15
H153 3H15
H161 1H16
H162 2H16