PDB Chemical Component G1C

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for G1C

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N1 C2 1.367 1.363
N1 C6 1.364 1.351
N1 HN1 1.000 0.970
C2 N2 1.391 1.373
C2 N3 1.360 1.314
N2 HN2 1.000 0.970
N2 HN2A 1.000 0.970
N3 C4 1.355 1.338
C4 C5 1.389 1.399
C4 N9 1.344 1.369
C5 C6 1.405 1.415
C5 N7 1.339 1.355
C6 O6 1.251 1.219
N7 C8 1.347 1.300
C8 N9 1.355 1.365
C8 H8 1.080 1.080
N9 C1' 1.443 1.465
PA O1A 1.513 1.610
PA O2A 1.478 1.480
PA O3A 1.520 1.610
PA O5' 1.522 1.610
PB O1B 1.513 1.611
PB O2B 1.476 1.480
PB O3A 1.520 1.610
PB C3B 1.731 1.822
PG O1G 1.510 1.611
PG O2G 1.512 1.609
PG C3B 1.728 1.824
PG O3G 1.478 1.480
C1' C2' 1.552 1.541
C1' O4' 1.441 1.437
C1' H1' 1.100 1.090
C2' C3' 1.534 1.548
C2' H2' 1.100 1.090
C2' H2'A 1.100 1.090
C3' O3' 1.427 1.430
C3' C4' 1.543 1.550
C3' H3' 1.100 1.090
O3' HO3' 0.950 0.967
C3B CL3B 1.762 1.802
C3B H3B 1.100 1.091
C4' O4' 1.433 1.444
C4' C5' 1.554 1.530
C4' H4' 1.100 1.090
C5' O5' 1.342 1.429
C5' H5' 1.100 1.090
C5' H5'A 1.100 1.089
O1A H14 0.950 0.967
O1B H15 0.950 0.967
O1G H16 0.949 0.967
O2G H17 0.950 0.967

Bond Angles for G1C

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C2 N1 C6 121.5 120.4
C2 N1 HN1 119.3 119.8
N1 C2 N2 120.6 119.0
N1 C2 N3 120.6 121.9
C6 N1 HN1 119.2 119.8
N1 C6 C5 118.3 118.3
N1 C6 O6 120.5 120.9
N2 C2 N3 118.8 119.1
C2 N2 HN2 120.0 120.0
C2 N2 HN2A 120.0 120.0
C2 N3 C4 119.4 121.1
HN2 N2 HN2A 120.0 120.0
N3 C4 C5 121.3 119.7
N3 C4 N9 130.7 134.2
C5 C4 N9 108.0 106.1
C4 C5 C6 118.8 118.6
C4 C5 N7 109.1 107.3
C4 N9 C8 105.5 107.5
C4 N9 C1' 126.3 126.2
C6 C5 N7 132.1 134.1
C5 C6 O6 121.2 120.8
C5 N7 C8 105.3 109.4
N7 C8 N9 112.1 109.8
N7 C8 H8 123.9 125.1
N9 C8 H8 123.9 125.0
C8 N9 C1' 128.2 126.3
N9 C1' C2' 114.0 109.9
N9 C1' O4' 112.5 109.9
N9 C1' H1' 103.5 109.8
O1A PA O2A 109.0 109.5
O1A PA O3A 107.6 109.5
O1A PA O5' 108.8 109.5
PA O1A H14 109.5 114.0
O2A PA O3A 112.0 109.5
O2A PA O5' 109.8 109.4
O3A PA O5' 109.5 109.5
PA O3A PB 127.9 134.0
PA O5' C5' 126.0 123.0
O1B PB O2B 109.2 109.4
O1B PB O3A 109.2 109.4
O1B PB C3B 108.1 109.5
PB O1B H15 109.5 114.0
O2B PB O3A 110.4 109.5
O2B PB C3B 110.3 109.5
O3A PB C3B 109.7 109.5
PB C3B PG 114.3 109.5
PB C3B CL3B 109.3 109.5
PB C3B H3B 106.4 109.5
O1G PG O2G 109.0 109.5
O1G PG C3B 109.9 109.5
O1G PG O3G 109.7 109.4
PG O1G H16 109.5 114.0
O2G PG C3B 108.9 109.5
O2G PG O3G 109.1 109.5
PG O2G H17 109.5 114.0
C3B PG O3G 110.2 109.5
PG C3B CL3B 109.7 109.5
PG C3B H3B 105.8 109.4
C2' C1' O4' 107.4 107.3
C2' C1' H1' 108.9 109.9
C1' C2' C3' 103.8 104.2
C1' C2' H2' 111.4 110.5
C1' C2' H2'A 111.4 110.5
O4' C1' H1' 110.6 110.1
C1' O4' C4' 108.9 107.0
C3' C2' H2' 111.4 110.5
C3' C2' H2'A 111.4 110.5
C2' C3' O3' 110.9 110.9
C2' C3' C4' 102.6 102.1
C2' C3' H3' 113.3 110.9
H2' C2' H2'A 107.5 110.5
O3' C3' C4' 110.4 110.9
O3' C3' H3' 105.9 110.8
C3' O3' HO3' 109.5 114.0
C4' C3' H3' 113.8 110.9
C3' C4' O4' 104.8 103.5
C3' C4' C5' 113.9 110.6
C3' C4' H4' 110.5 110.6
CL3B C3B H3B 111.2 109.5
O4' C4' C5' 111.8 110.6
O4' C4' H4' 112.7 110.7
C5' C4' H4' 103.4 110.7
C4' C5' O5' 110.6 109.5
C4' C5' H5' 109.1 109.4
C4' C5' H5'A 109.1 109.5
O5' C5' H5' 109.1 109.5
O5' C5' H5'A 109.1 109.5
H5' C5' H5'A 109.9 109.5

Torsion Angles for G1C

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C6 N1 C2 HN1 180.0 180.3
C2 N1 C6 C5 1.2 0.0
C2 N1 C6 O6 181.5 180.0
N2 C2 N1 N3 179.0 180.0
N1 C2 N2 HN2 181.0 360.0
N1 C2 N2 HN2A 1.0 180.0
N1 C2 N3 C4 0.6 360.0
C2 N1 C6 HN1 180.0 179.7
C6 N1 C2 N2 177.5 180.0
C6 N1 C2 N3 358.5 0.0
C4 C5 C6 N1 360.0 359.9
N1 C6 C5 N7 181.0 180.0
C5 C6 N1 O6 179.7 180.0
C2 N1 HN1 C6 180.0 180.3
HN1 N1 C2 N2 357.5 359.8
HN1 N1 C2 N3 178.5 179.8
HN1 N1 C6 C5 181.2 180.3
HN1 N1 C6 O6 1.5 0.2
N2 C2 N1 C6 177.5 180.0
N2 C2 N1 HN1 357.5 359.8
N1 C2 N2 N3 181.0 180.0
N2 C2 N3 C4 181.6 180.0
HN2 N2 C2 HN2A 180.0 179.9
N3 C2 N1 C6 358.5 0.0
N3 C2 N1 HN1 178.5 179.8
N1 C2 N3 N2 179.0 180.0
N3 C2 N2 HN2 0.0 180.0
N3 C2 N2 HN2A 180.0 0.0
C2 N3 C4 C5 0.5 360.0
C2 N3 C4 N9 179.9 180.0
HN2 N2 C2 N3 0.0 180.0
C2 N2 HN2 HN2A 180.0 180.1
HN2A N2 C2 N3 180.0 0.0
C2 N2 HN2A HN2 180.0 179.9
C5 C4 N3 N9 180.7 180.0
N3 C4 C5 C6 359.2 0.0
N3 C4 C5 N7 178.4 180.0
N3 C4 N9 C8 182.0 180.0
N3 C4 N9 C1' 0.8 0.0
N1 C6 C5 C4 360.0 359.9
N3 C4 C5 N9 179.5 180.0
C5 C4 N9 C8 1.4 0.0
C5 C4 N9 C1' 180.2 180.0
C6 C5 C4 N7 180.8 180.1
C4 C5 C6 O6 179.6 180.0
C4 C5 N7 C8 0.3 0.0
N3 C4 N9 C5 180.6 180.0
N9 C4 C5 C6 179.7 180.0
N9 C4 C5 N7 358.9 360.0
N7 C8 N9 C4 358.7 0.0
C4 N9 C8 H8 178.7 180.0
C8 N9 C4 C1' 181.2 180.0
C4 N9 C1' C2' 57.3 85.0
C4 N9 C1' O4' 179.8 202.8
C4 N9 C1' H1' 299.2 324.0
C5 C6 N1 HN1 181.2 180.3
N1 C6 C5 O6 180.3 180.0
C6 C5 C4 N9 179.7 180.0
C4 C5 C6 N7 179.0 179.9
C6 C5 N7 C8 179.3 180.0
N7 C5 C4 N9 358.9 360.0
C4 C5 N7 C6 180.9 180.1
N7 C5 C6 O6 0.6 0.1
C5 N7 C8 N9 0.7 360.0
C5 N7 C8 H8 180.7 180.0
O6 C6 N1 HN1 1.5 0.2
N1 C6 O6 C5 179.7 180.0
O6 C6 C5 N7 0.6 0.1
C4 N9 C8 N7 358.7 0.0
N9 C8 N7 H8 180.0 180.0
N7 C8 N9 C1' 179.9 180.0
C4 N9 C8 C1' 178.8 180.0
N7 C8 N9 H8 180.0 180.0
C8 N9 C1' C2' 235.8 265.0
C8 N9 C1' O4' 358.3 22.9
C8 N9 C1' H1' 117.7 144.1
N7 C8 H8 N9 180.0 180.0
H8 C8 N9 C1' 359.9 359.9
C4 N9 C1' C8 181.5 180.0
C1' N9 C8 H8 359.9 359.9
C2' C1' N9 O4' 237.5 242.2
C2' C1' N9 H1' 118.2 121.0
N9 C1' C2' C3' 133.2 121.5
N9 C1' C2' H2' 253.2 240.1
N9 C1' C2' H2'A 13.2 2.8
O4' C1' N9 H1' 240.7 238.8
N9 C1' O4' C4' 248.9 214.0
O2A PA O1A O3A 238.3 240.0
O2A PA O1A O5' 119.8 120.0
O3A PA O1A O5' 241.4 240.0
O1A PA O3A PB 212.9 284.9
O1A PA O5' C5' 58.1 65.0
O1A PA O2A O3A 119.0 120.0
O1A PA O2A O5' 240.8 240.0
O2A PA O1A H14 0.0 180.0
O3A PA O2A O5' 121.9 120.0
O2A PA O3A PB 332.8 44.9
O2A PA O5' C5' 298.8 305.0
O1A PA O3A O2A 240.2 240.0
O1A PA O3A O5' 118.1 120.0
O3A PA O1A H14 121.7 300.0
O2A PA O3A O5' 237.9 240.0
O3A PA O5' C5' 175.4 185.0
O1B PB O3A PA 57.1 60.0
O2B PB O3A PA 297.1 300.1
PA O3A PB C3B 175.4 180.1
O1A PA O5' O2A 119.3 120.0
O1A PA O5' O3A 242.7 240.0
O5' PA O1A H14 240.2 60.0
O2A PA O5' O3A 123.4 120.0
O5' PA O3A PB 94.8 164.9
C4' C5' O5' PA 186.6 180.0
PA O5' C5' H5' 66.6 60.0
PA O5' C5' H5'A 306.6 300.0
PA O3A PB O1B 57.1 60.0
O2B PB O1B O3A 120.8 120.0
O2B PB O1B C3B 240.0 240.0
O3A PB O1B C3B 119.2 120.0
O1B PB C3B PG 183.7 300.0
O1B PB C3B CL3B 60.3 180.0
O1B PB C3B H3B 300.2 60.0
PA O3A PB O2B 297.1 300.1
O1B PB O2B O3A 240.0 240.1
O1B PB O2B C3B 118.6 120.0
O2B PB O1B H15 0.0 180.0
O3A PB O2B C3B 238.6 240.0
O2B PB C3B PG 303.0 60.0
O2B PB C3B CL3B 179.6 300.0
O2B PB C3B H3B 59.5 180.0
PB O3A PA O5' 94.8 164.9
O1B PB O3A O2B 120.1 119.9
O1B PB O3A C3B 241.8 240.0
O3A PB O1B H15 239.2 60.0
O2B PB O3A C3B 121.7 120.0
O3A PB C3B PG 64.8 180.0
O3A PB C3B CL3B 301.4 60.0
O3A PB C3B H3B 181.2 300.0
O1B PB C3B O2B 240.7 240.0
O1B PB C3B O3A 118.9 120.0
C3B PB O1B H15 120.0 300.0
O2B PB C3B O3A 238.2 239.9
O1G PG C3B PB 297.6 60.0
O2G PG C3B PB 178.3 180.0
PB C3B PG O3G 58.7 300.0
PG C3B PB CL3B 123.4 120.0
PG C3B PB H3B 243.6 240.0
CL3B C3B PB H3B 120.2 120.0
PB C3B PG O1G 297.6 60.0
O2G PG O1G C3B 119.3 240.0
O2G PG O1G O3G 240.6 120.0
O1G PG O2G H17 119.8 300.0
C3B PG O1G O3G 121.4 240.0
O1G PG C3B CL3B 60.8 180.0
O1G PG C3B H3B 180.9 300.0
PB C3B PG O2G 178.3 180.0
O1G PG O2G C3B 240.1 120.0
O1G PG O2G O3G 119.8 240.0
O2G PG O1G H16 240.6 300.0
C3B PG O2G O3G 239.7 120.0
O2G PG C3B CL3B 301.5 300.0
O2G PG C3B H3B 61.6 60.0
PB C3B PG CL3B 236.8 240.0
PB C3B PG H3B 116.7 120.0
O1G PG C3B O2G 119.3 240.0
O1G PG C3B O3G 238.9 119.9
C3B PG O1G H16 121.3 60.1
O2G PG C3B O3G 119.6 239.9
C3B PG O2G H17 239.7 180.0
CL3B C3B PG H3B 239.9 240.0
O1G PG O3G O2G 240.7 120.0
O1G PG O3G C3B 121.2 240.0
O3G PG O1G H16 360.0 180.0
O2G PG O3G C3B 240.5 120.1
O3G PG O2G H17 0.0 60.0
O3G PG C3B CL3B 181.9 60.1
O3G PG C3B H3B 302.0 180.0
N9 C1' C2' O4' 125.2 119.4
N9 C1' C2' H1' 245.0 239.1
O4' C1' C2' H1' 119.8 119.6
C2' C1' O4' C4' 15.0 333.4
C3' C2' C1' H2' 240.0 241.3
C3' C2' C1' H2'A 120.0 118.7
C1' C2' C3' O3' 92.2 139.1
C1' C2' C3' C4' 334.2 20.9
C1' C2' C3' H3' 211.1 262.6
H2' C2' C1' H2'A 240.0 237.3
N9 C1' O4' C2' 233.9 240.6
N9 C1' O4' H1' 115.1 121.1
C2' C1' O4' H1' 241.3 240.5
O4' C1' C2' C3' 8.0 2.0
O4' C1' C2' H2' 128.0 120.7
O4' C1' C2' H2'A 248.0 243.4
C3' C4' O4' C1' 328.1 40.1
C1' O4' C4' C5' 91.9 158.6
C1' O4' C4' H4' 207.8 281.6
N9 C1' H1' C2' 121.6 121.0
N9 C1' H1' O4' 239.4 238.9
C2' C1' H1' O4' 117.8 118.0
H1' C1' C2' C3' 248.2 242.4
H1' C1' C2' H2' 8.2 1.1
H1' C1' C2' H2'A 128.2 123.7
H1' C1' O4' C4' 133.8 93.0
C3' C2' C1' O4' 8.0 2.0
C3' C2' C1' H1' 248.2 242.4
C1' C2' C3' H2' 120.0 118.7
C1' C2' C3' H2'A 240.0 241.3
H2' C2' C3' H2'A 120.0 122.7
O3' C3' C2' C4' 117.9 118.2
O3' C3' C2' H3' 241.1 236.5
C2' C3' O3' HO3' 180.0 61.4
C4' C3' C2' H3' 123.1 118.3
C2' C3' C4' O4' 35.6 322.9
C2' C3' C4' C5' 273.1 204.5
C2' C3' C4' H4' 157.3 81.5
H2' C2' C1' O4' 128.0 120.7
H2' C2' C1' H1' 8.2 1.1
C1' C2' H2' C3' 244.6 245.3
C1' C2' H2' H2'A 122.3 122.6
C3' C2' H2' H2'A 237.7 237.4
H2' C2' C3' O3' 332.2 20.4
H2' C2' C3' C4' 214.2 262.2
H2' C2' C3' H3' 91.1 144.0
H2'A C2' C1' O4' 248.0 243.4
H2'A C2' C1' H1' 128.2 123.7
C1' C2' H2'A C3' 115.4 114.7
C1' C2' H2'A H2' 237.7 237.4
C3' C2' H2'A H2' 122.3 122.6
H2'A C2' C3' O3' 212.1 257.8
H2'A C2' C3' C4' 94.2 139.6
H2'A C2' C3' H3' 331.1 21.3
O3' C3' C2' H2' 332.2 20.4
O3' C3' C2' H2'A 212.1 257.8
C2' C3' O3' C4' 246.9 247.3
C2' C3' O3' H3' 123.3 123.6
C4' C3' O3' H3' 236.4 236.3
O3' C3' C4' O4' 277.3 204.7
O3' C3' C4' C5' 154.9 86.3
O3' C3' C4' H4' 39.0 323.2
C1' O4' C4' C3' 328.1 40.1
C4' C3' C2' H2' 214.2 262.2
C4' C3' C2' H2'A 94.2 139.6
C2' C3' C4' O3' 118.3 118.2
C2' C3' C4' H3' 237.2 241.8
O3' C3' C4' H3' 118.9 123.5
C4' C3' O3' HO3' 293.0 174.1
O4' C4' C3' C5' 122.4 118.5
O4' C4' C3' H4' 238.3 241.5
C5' C4' C3' H4' 115.8 123.0
C3' C4' C5' O5' 173.0 185.0
C3' C4' C5' H5' 292.9 305.0
C3' C4' C5' H5'A 52.9 65.0
H3' C3' C2' H2' 91.1 144.0
H3' C3' C2' H2'A 331.1 21.3
C2' C3' H3' O3' 238.2 236.4
C2' C3' H3' C4' 116.7 112.8
O3' C3' H3' C4' 238.5 236.4
H3' C3' O3' HO3' 56.7 297.8
H3' C3' C4' O4' 158.4 81.2
H3' C3' C4' C5' 35.9 322.7
H3' C3' C4' H4' 280.1 199.7
HO3' O3' C3' C4' 293.0 174.1
HO3' O3' C3' H3' 56.7 297.8
PB C3B CL3B PG 126.1 120.0
PB C3B CL3B H3B 242.9 240.0
CL3B C3B PG O3G 181.9 60.1
PG C3B CL3B H3B 116.8 120.0
PB C3B H3B PG 238.0 240.0
PB C3B H3B CL3B 118.9 120.0
H3B C3B PG O3G 302.0 180.0
PG C3B H3B CL3B 240.9 240.0
C4' O4' C1' H1' 133.8 93.0
O4' C4' C3' H3' 158.4 81.2
C3' C4' O4' C5' 236.2 241.5
C3' C4' O4' H4' 120.3 118.5
C5' C4' O4' H4' 244.1 237.0
O4' C4' C5' O5' 54.4 71.0
O4' C4' C5' H5' 174.4 191.0
O4' C4' C5' H5'A 294.4 310.9
PA O5' C5' C4' 186.6 180.0
C5' C4' C3' H3' 35.9 322.7
C3' C4' C5' O4' 118.5 114.0
C3' C4' C5' H4' 240.0 237.0
O4' C4' C5' H4' 121.5 123.0
O5' C5' C4' H5' 240.0 240.0
O5' C5' C4' H5'A 120.0 120.0
H5' C5' C4' H5'A 240.0 240.0
H4' C4' C3' H3' 280.1 199.7
C3' C4' H4' O4' 243.1 246.0
C3' C4' H4' C5' 122.2 123.0
O4' C4' H4' C5' 239.1 237.0
H4' C4' C5' O5' 292.9 308.0
H4' C4' C5' H5' 52.9 67.9
H4' C4' C5' H5'A 172.9 187.9
O5' C5' C4' H4' 292.9 308.0
C4' C5' O5' H5' 120.0 120.0
C4' C5' O5' H5'A 240.0 240.0
H5' C5' O5' H5'A 120.0 120.0
H5' C5' C4' H4' 52.9 67.9
C4' C5' H5' O5' 239.1 240.0
C4' C5' H5' H5'A 119.5 120.0
O5' C5' H5' H5'A 240.4 240.0
H5'A C5' C4' H4' 172.9 187.9
C4' C5' H5'A O5' 120.9 120.0
C4' C5' H5'A H5' 240.5 240.0
O5' C5' H5'A H5' 119.5 120.0
H14 O1A PA O2A 0.0 180.0
H14 O1A PA O3A 121.7 300.0
H14 O1A PA O5' 240.2 60.0
H15 O1B PB O2B 0.0 180.0
H15 O1B PB O3A 239.2 60.0
H15 O1B PB C3B 120.0 300.0
H16 O1G PG O2G 240.6 300.0
H16 O1G PG C3B 121.3 60.1
H16 O1G PG O3G 360.0 180.0
H17 O2G PG C3B 239.7 180.0
H17 O2G PG O3G 0.0 60.0