Atom Nomenclature for G02

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for G02

Atom Name (V3) Atom Name (V2)
FBI F1
CBG C1
FBJ F2
FBK F3
CBC C2
CBE C3
CBB C4
CBD C5
CBF C6
CBA C7
NAZ N1
CAY C8
OBH O1
CAS C9
CAT C10
CAU C11
CAV C12
CAW C13
CAX C14
CAQ C15
NAP N2
C6 C16
N1 N3
C5 C17
CAO C18
NAN N4
NAM N5
CAR C19
C4 C20
N3 N6
C2 C21
CAA C22
NAC N7
CAE C23
CAF C24
NAD N8
CAB C25
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H7 H7
H8 H8
H9 H9
H10 H10
H11 H11
H12 H12
H13 H13
H14 H14
H15 H15
H16 H16
H17 H17
H18 H18
H19 H19