PDB Chemical Component G

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for G

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
OP3 P 1.482 1.610
OP3 HOP3 0.950 0.967
P OP1 1.499 1.479
P OP2 1.501 1.610
P O5' 1.598 1.609
OP2 HOP2 0.950 0.968
O5' C5' 1.446 1.428
C5' C4' 1.507 1.529
C5' H5' 1.116 1.091
C5' H5'' 1.115 1.090
C4' O4' 1.438 1.444
C4' C3' 1.528 1.543
C4' H4' 1.116 1.091
O4' C1' 1.503 1.443
C3' O3' 1.428 1.429
C3' C2' 1.499 1.546
C3' H3' 1.115 1.090
O3' HO3' 0.950 0.967
C2' O2' 1.399 1.429
C2' C1' 1.467 1.544
C2' H2' 1.115 1.090
O2' HO2' 0.950 0.968
C1' N9 1.512 1.465
C1' H1' 1.114 1.090
N9 C8 1.359 1.365
N9 C4 1.374 1.368
C8 N7 1.287 1.301
C8 H8 1.103 1.080
N7 C5 1.400 1.356
C5 C6 1.406 1.414
C5 C4 1.375 1.399
C6 O6 1.250 1.219
C6 N1 1.396 1.351
N1 C2 1.341 1.362
N1 H1 1.020 0.970
C2 N2 1.359 1.372
C2 N3 1.338 1.314
N2 H21 1.020 0.970
N2 H22 1.020 0.970
N3 C4 1.333 1.338

Bond Angles for G

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
P OP3 HOP3 112.7 106.8
OP3 P OP1 112.7 109.5
OP3 P OP2 115.3 109.5
OP3 P O5' 105.3 109.5
OP1 P OP2 111.8 109.4
OP1 P O5' 106.6 109.5
OP2 P O5' 104.3 109.5
P OP2 HOP2 111.7 106.8
P O5' C5' 119.4 106.9
O5' C5' C4' 107.5 109.6
O5' C5' H5' 113.0 109.4
O5' C5' H5'' 113.0 109.5
C4' C5' H5' 112.9 109.5
C4' C5' H5'' 112.9 109.5
C5' C4' O4' 109.1 110.4
C5' C4' C3' 114.4 110.6
C5' C4' H4' 105.3 110.3
H5' C5' H5'' 97.5 109.4
O4' C4' C3' 106.0 104.8
O4' C4' H4' 113.9 110.3
C4' O4' C1' 105.7 105.3
C3' C4' H4' 108.4 110.3
C4' C3' O3' 110.2 110.6
C4' C3' C2' 103.6 104.1
C4' C3' H3' 114.4 110.5
O4' C1' C2' 108.8 104.9
O4' C1' N9 101.8 110.4
O4' C1' H1' 120.1 110.4
O3' C3' C2' 113.8 110.5
O3' C3' H3' 104.2 110.4
C3' O3' HO3' 110.3 106.8
C2' C3' H3' 110.9 110.6
C3' C2' O2' 112.3 110.5
C3' C2' C1' 101.3 103.9
C3' C2' H2' 112.2 110.5
O2' C2' C1' 106.9 110.8
O2' C2' H2' 107.1 110.5
C2' O2' HO2' 112.3 106.8
C1' C2' H2' 117.2 110.4
C2' C1' N9 121.9 110.4
C2' C1' H1' 99.1 110.4
N9 C1' H1' 106.5 110.2
C1' N9 C8 130.2 126.2
C1' N9 C4 123.0 126.4
C8 N9 C4 106.9 107.5
N9 C8 N7 114.8 109.8
N9 C8 H8 125.0 125.1
N9 C4 C5 103.8 106.1
N9 C4 N3 128.2 134.2
N7 C8 H8 120.2 125.0
C8 N7 C5 102.5 109.3
N7 C5 C6 128.7 134.1
N7 C5 C4 112.1 107.3
C6 C5 C4 119.2 118.6
C5 C6 O6 128.7 120.8
C5 C6 N1 111.8 118.3
C5 C4 N3 128.0 119.7
O6 C6 N1 119.5 120.9
C6 N1 C2 124.7 120.3
C6 N1 H1 119.9 119.8
C2 N1 H1 115.4 119.9
N1 C2 N2 116.6 119.0
N1 C2 N3 124.1 121.9
N2 C2 N3 119.2 119.0
C2 N2 H21 116.6 120.0
C2 N2 H22 109.6 120.0
C2 N3 C4 112.2 121.1
H21 N2 H22 109.6 120.0

Torsion Angles for G

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
OP1 P OP3 OP2 129.9 240.0
OP1 P OP3 O5' 244.2 120.0
OP2 P OP3 O5' 114.3 240.0
OP3 P OP2 HOP2 310.3 60.0
OP3 P O5' C5' 38.7 180.0
HOP3 OP3 P OP1 180.0 300.0
HOP3 OP3 P OP2 50.1 60.0
HOP3 OP3 P O5' 295.8 180.0
OP1 P OP3 HOP3 180.0 300.0
OP3 P OP1 OP2 228.3 120.0
OP3 P OP1 O5' 115.0 240.0
OP2 P OP1 O5' 246.7 120.0
OP1 P OP2 HOP2 180.0 180.0
OP1 P O5' C5' 158.6 60.0
OP2 P OP3 HOP3 50.1 60.0
OP3 P OP2 OP1 130.3 240.0
OP3 P OP2 O5' 245.1 120.0
OP1 P OP2 O5' 114.8 240.0
OP2 P O5' C5' 277.0 300.0
O5' P OP3 HOP3 295.8 180.0
OP3 P O5' OP1 240.1 120.0
OP3 P O5' OP2 121.8 240.0
OP1 P O5' OP2 241.6 120.0
O5' P OP2 HOP2 65.2 300.0
P O5' C5' C4' 166.2 180.0
P O5' C5' H5' 291.4 60.0
P O5' C5' H5'' 40.9 300.1
HOP2 OP2 P O5' 65.2 300.0
C4' C5' O5' H5' 234.8 120.0
C4' C5' O5' H5'' 125.3 239.9
O5' C5' C4' O4' 294.4 61.4
O5' C5' C4' C3' 52.9 176.9
O5' C5' C4' H4' 171.9 299.3
H5' C5' O5' H5'' 250.5 119.9
O5' C5' C4' H5' 125.3 240.0
O5' C5' C4' H5'' 234.7 120.1
H5' C5' C4' H5'' 109.4 240.1
O4' C4' C5' C3' 241.6 244.5
O4' C4' C5' H4' 122.6 122.2
C5' C4' O4' C1' 137.8 159.5
C3' C4' C5' H4' 241.0 237.7
C5' C4' C3' O3' 84.5 98.3
C5' C4' C3' C2' 206.6 217.0
C5' C4' C3' H3' 327.5 335.8
O5' C5' H5' C4' 237.8 120.1
O5' C5' H5' H5'' 118.9 240.1
C4' C5' H5' H5'' 241.2 119.9
H5' C5' C4' O4' 169.2 181.5
H5' C5' C4' C3' 287.6 297.0
H5' C5' C4' H4' 46.6 59.3
O5' C5' H5'' C4' 122.3 239.9
O5' C5' H5'' H5' 241.1 119.9
C4' C5' H5'' H5' 118.8 240.1
H5'' C5' C4' O4' 59.8 301.4
H5'' C5' C4' C3' 178.2 56.9
H5'' C5' C4' H4' 297.2 179.2
O4' C4' C5' H5' 169.2 181.5
O4' C4' C5' H5'' 59.8 301.4
C5' C4' O4' C3' 123.6 119.1
C5' C4' O4' H4' 242.7 237.8
C3' C4' O4' H4' 119.1 118.8
O4' C4' C3' O3' 204.7 217.2
O4' C4' C3' C2' 326.8 336.0
O4' C4' C3' H3' 87.7 94.7
C4' O4' C1' C2' 10.2 319.6
C4' O4' C1' N9 240.4 200.6
C4' O4' C1' H1' 123.3 78.5
C3' C4' C5' H5' 287.6 297.0
C3' C4' C5' H5'' 178.2 56.9
C5' C4' C3' O4' 239.8 241.1
C5' C4' C3' H4' 117.2 122.3
O4' C4' C3' H4' 237.4 241.2
C3' C4' O4' C1' 14.2 40.5
O3' C3' C4' C2' 237.9 241.3
O3' C3' C4' H3' 117.0 122.5
C4' C3' O3' HO3' 179.9 180.0
C2' C3' C4' H3' 239.1 241.3
C4' C3' C2' O2' 284.2 241.2
C4' C3' C2' C1' 37.9 0.1
C4' C3' C2' H2' 163.7 118.6
H4' C4' C5' H5' 46.6 59.3
H4' C4' C5' H5'' 297.2 179.2
C5' C4' H4' O4' 119.5 122.2
C5' C4' H4' C3' 237.1 237.5
O4' C4' H4' C3' 117.7 115.3
H4' C4' O4' C1' 255.1 281.7
H4' C4' C3' O3' 327.3 336.0
H4' C4' C3' C2' 89.4 94.7
H4' C4' C3' H3' 210.3 213.5
C1' O4' C4' C3' 14.2 40.5
C1' O4' C4' H4' 255.1 281.7
C3' C2' C1' O4' 329.7 23.9
O2' C2' C1' O4' 87.3 142.6
O4' C1' C2' H2' 207.4 265.3
C2' C1' O4' N9 129.8 119.0
C2' C1' O4' H1' 247.0 241.1
N9 C1' O4' H1' 117.2 122.1
O4' C1' N9 C8 5.6 27.1
O4' C1' N9 C4 186.3 207.0
O3' C3' C4' H4' 327.3 336.0
C4' C3' O3' C2' 115.8 114.8
C4' C3' O3' H3' 236.8 237.4
C2' C3' O3' H3' 121.0 122.7
O3' C3' C2' O2' 43.9 360.0
O3' C3' C2' C1' 157.6 118.9
O3' C3' C2' H2' 283.4 237.4
C2' C3' C4' H4' 89.4 94.7
C4' C3' C2' O3' 240.3 241.2
C4' C3' C2' H3' 123.2 118.7
O4' C1' C2' C3' 329.7 23.9
O3' C3' C2' H3' 242.9 237.4
C2' C3' O3' HO3' 64.1 65.3
O2' C2' C3' C1' 246.4 241.1
O2' C2' C3' H2' 120.6 122.6
C3' C2' O2' HO2' 180.1 298.5
C1' C2' C3' H2' 234.2 241.5
C3' C2' C1' N9 87.4 142.8
C3' C2' C1' H1' 203.5 264.9
H3' C3' C4' H4' 210.3 213.5
C4' C3' H3' O3' 120.5 122.6
C4' C3' H3' C2' 243.3 245.3
O3' C3' H3' C2' 122.9 122.6
H3' C3' O3' HO3' 303.2 302.6
H3' C3' C2' O2' 161.1 122.5
H3' C3' C2' C1' 274.7 241.4
H3' C3' C2' H2' 40.5 359.9
HO3' O3' C3' C2' 64.1 65.3
HO3' O3' C3' H3' 303.2 302.6
O4' C1' C2' O2' 87.3 142.6
O2' C2' C3' H3' 161.1 122.5
C3' C2' O2' C1' 110.1 114.7
C3' C2' O2' H2' 236.5 237.4
C1' C2' O2' H2' 126.4 122.7
O2' C2' C1' N9 205.1 261.5
O2' C2' C1' H1' 321.1 23.6
O4' C1' C2' N9 242.3 241.0
O4' C1' C2' H1' 126.3 118.9
C1' C2' C3' H3' 274.7 241.4
C3' C2' C1' O2' 242.4 241.3
C3' C2' C1' H2' 122.3 118.6
O2' C2' C1' H2' 240.0 237.3
C1' C2' O2' HO2' 69.9 183.9
N9 C1' C2' H1' 244.0 237.9
C2' C1' N9 C8 244.5 271.5
C2' C1' N9 C4 65.2 91.4
H2' C2' C3' H3' 40.5 359.9
C3' C2' H2' O2' 123.6 122.6
C3' C2' H2' C1' 243.5 245.5
O2' C2' H2' C1' 119.9 122.9
H2' C2' O2' HO2' 303.5 61.2
H2' C2' C1' N9 325.1 24.3
H2' C2' C1' H1' 81.1 146.4
HO2' O2' C2' C1' 69.9 183.9
HO2' O2' C2' H2' 303.5 61.2
O4' C1' N9 C2' 121.1 115.6
O4' C1' N9 H1' 233.4 237.8
N9 C1' C2' H2' 325.1 24.3
C2' C1' N9 H1' 112.3 122.2
C8 N9 C1' C4 179.3 180.0
C1' N9 C8 N7 180.1 180.0
C1' N9 C8 H8 0.2 360.0
C1' N9 C4 C5 179.7 180.0
C1' N9 C4 N3 359.6 0.1
O4' C1' H1' C2' 241.9 244.4
O4' C1' H1' N9 114.7 122.2
H1' C1' C2' H2' 81.1 146.4
C2' C1' H1' N9 232.8 237.8
H1' C1' N9 C8 132.2 149.3
H1' C1' N9 C4 312.9 329.3
C8 N9 C1' H1' 132.2 149.3
C1' N9 C8 C4 180.6 180.0
C8 N9 C4 C5 0.3 360.0
C8 N9 C4 N3 180.2 180.0
N7 C8 N9 H8 180.0 180.0
N9 C8 N7 C5 0.4 360.0
C4 N9 C1' H1' 312.9 329.3
C1' N9 C4 C8 179.4 180.0
C4 N9 C8 N7 359.5 0.0
C4 N9 C8 H8 179.6 180.0
N7 C5 C4 N9 359.9 0.0
C6 C5 C4 N9 180.1 180.0
C5 C4 N9 N3 180.1 179.9
C2 N3 C4 N9 180.2 179.9
N7 C8 N9 C4 359.5 0.0
N9 C8 N7 H8 180.0 180.0
C8 N7 C5 C6 179.6 180.0
C8 N7 C5 C4 359.8 360.0
H8 C8 N9 C4 179.6 180.0
N9 C8 H8 N7 180.0 180.0
H8 C8 N7 C5 180.4 180.0
N9 C4 C5 N7 359.9 0.0
C5 N7 C8 H8 180.4 180.0
C6 C5 N7 C4 179.8 180.0
N7 C5 C6 O6 0.3 0.0
N7 C5 C6 N1 179.9 179.7
N7 C5 C4 N3 180.0 180.0
N9 C4 C5 C6 180.1 180.0
N7 C5 C6 C4 180.2 180.0
C6 C5 C4 N3 0.2 360.0
O6 C6 C5 N1 180.4 180.3
C5 C6 N1 C2 0.3 0.6
C5 C6 N1 H1 180.3 180.0
N9 C4 C5 N3 179.9 180.0
N7 C5 C4 C6 179.8 180.0
C4 C5 C6 O6 180.1 180.0
C4 C5 C6 N1 359.7 359.7
C2 N3 C4 C5 0.0 0.0
O6 C6 C5 C4 180.1 180.0
C5 C6 O6 N1 179.5 179.7
O6 C6 N1 C2 179.9 180.3
O6 C6 N1 H1 359.9 359.7
N1 C6 C5 C4 359.7 359.7
C5 C6 N1 O6 180.4 180.3
C2 N1 C6 H1 180.0 180.6
C6 N1 C2 N2 179.7 179.7
C6 N1 C2 N3 359.9 359.3
C6 N1 C2 H1 180.0 179.4
N2 C2 N1 N3 179.8 180.3
N1 C2 N2 H21 180.0 179.6
N1 C2 N2 H22 54.7 359.5
N1 C2 N3 C4 359.9 0.3
C6 N1 H1 C2 180.0 180.6
H1 N1 C2 N2 359.7 0.3
H1 N1 C2 N3 179.9 180.0
N2 C2 N1 H1 359.7 0.3
N1 C2 N2 N3 180.2 179.7
N2 C2 N3 C4 180.1 180.0
H21 N2 C2 H22 125.2 180.1
N9 C4 N3 C2 180.2 179.9
C5 C4 N3 C2 0.0 0.0
N3 C2 N1 H1 179.9 180.0
N1 C2 N3 N2 179.8 180.3
N3 C2 N2 H21 359.8 359.9
N3 C2 N2 H22 234.6 179.8
H21 N2 C2 N3 359.8 359.9
C2 N2 H21 H22 234.7 179.9
H22 N2 C2 N3 234.6 179.8
C2 N2 H22 H21 129.2 180.1
N9 C4 N3 C5 180.2 179.9