PDB Chemical Component FZQ
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for FZQ
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O2' |
C2' |
1.422 |
1.429 |
| O2 |
C2 |
1.236 |
1.220 |
| C2' |
C1' |
1.545 |
1.545 |
| C2' |
C3' |
1.535 |
1.545 |
| O3' |
C3' |
1.421 |
1.430 |
| C2 |
N3 |
1.368 |
1.332 |
| C2 |
N1 |
1.402 |
1.345 |
| C1' |
N1 |
1.485 |
1.465 |
| C1' |
O4' |
1.419 |
1.444 |
| N3 |
C4 |
1.344 |
1.327 |
| C3' |
C4' |
1.519 |
1.544 |
| N1 |
C6 |
1.387 |
1.363 |
| C4' |
O4' |
1.439 |
1.444 |
| C4' |
C5' |
1.507 |
1.530 |
| C4 |
N4 |
1.339 |
1.375 |
| C4 |
C5 |
1.432 |
1.409 |
| C6 |
C5 |
1.349 |
1.355 |
| C5' |
O5' |
1.463 |
1.428 |
| OG |
CB |
1.417 |
1.428 |
| O5' |
S |
1.599 |
1.523 |
| O2S |
S |
1.418 |
1.421 |
| CB |
CA |
1.526 |
1.530 |
| S |
N3S |
1.595 |
1.655 |
| S |
O1S |
1.421 |
1.421 |
| N3S |
C |
1.443 |
1.348 |
| C |
CA |
1.495 |
1.507 |
| C |
O |
1.232 |
1.213 |
| CA |
N |
1.468 |
1.469 |
| N |
H1 |
1.000 |
1.009 |
| N |
H2 |
1.000 |
1.009 |
| CA |
H4 |
1.100 |
1.090 |
| CB |
H5 |
1.100 |
1.091 |
| CB |
H6 |
1.100 |
1.091 |
| OG |
H7 |
0.950 |
0.966 |
| C1' |
H8 |
1.100 |
1.090 |
| C2' |
H9 |
1.101 |
1.090 |
| C3' |
H10 |
1.101 |
1.089 |
| C4' |
H11 |
1.100 |
1.091 |
| C5 |
H12 |
1.080 |
1.080 |
| C5' |
H13 |
1.100 |
1.090 |
| C5' |
H14 |
1.100 |
1.090 |
| C6 |
H15 |
1.080 |
1.080 |
| N3S |
H16 |
1.000 |
0.970 |
| N4 |
H17 |
0.999 |
0.971 |
| N4 |
H18 |
1.000 |
0.970 |
| O2' |
H19 |
0.950 |
0.967 |
| O3' |
H20 |
0.950 |
0.966 |
Bond Angles for FZQ
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O2' |
C2' |
H9 |
112.1 |
110.5 |
| C2' |
C1' |
N1 |
115.1 |
110.4 |
| C2' |
C1' |
O4' |
107.5 |
104.8 |
| C2' |
C1' |
H8 |
107.7 |
110.5 |
| C2' |
C3' |
C4' |
102.5 |
104.0 |
| C3' |
C2' |
H9 |
110.3 |
110.5 |
| C2' |
C3' |
H10 |
110.4 |
110.5 |
| O3' |
C3' |
H10 |
112.1 |
110.6 |
| N1 |
C2 |
N3 |
118.6 |
121.1 |
| C2 |
N3 |
C4 |
120.8 |
120.7 |
| C1' |
N1 |
C2 |
118.9 |
119.8 |
| C2 |
N1 |
C6 |
120.3 |
120.3 |
| N1 |
C1' |
O4' |
108.7 |
110.4 |
| C1' |
N1 |
C6 |
120.7 |
119.8 |
| N1 |
C1' |
H8 |
108.4 |
110.3 |
| C1' |
O4' |
C4' |
108.6 |
105.3 |
| O4' |
C1' |
H8 |
109.3 |
110.4 |
| N3 |
C4 |
N4 |
118.0 |
120.2 |
| C3' |
C4' |
O4' |
103.9 |
104.9 |
| C3' |
C4' |
C5' |
116.1 |
110.4 |
| C4' |
C3' |
H10 |
110.6 |
110.5 |
| C3' |
C4' |
H11 |
108.3 |
110.4 |
| N1 |
C6 |
H15 |
119.4 |
120.4 |
| C5' |
C4' |
O4' |
110.5 |
110.4 |
| O4' |
C4' |
H11 |
109.4 |
110.3 |
| C4' |
C5' |
O5' |
108.2 |
109.5 |
| C5' |
C4' |
H11 |
108.5 |
110.4 |
| C4' |
C5' |
H13 |
109.8 |
109.5 |
| C4' |
C5' |
H14 |
109.8 |
109.4 |
| C5 |
C4 |
N4 |
120.4 |
120.2 |
| C4 |
N4 |
H17 |
120.0 |
120.0 |
| C4 |
N4 |
H18 |
120.0 |
120.0 |
| C4 |
C5 |
H12 |
121.2 |
120.5 |
| C6 |
C5 |
H12 |
121.2 |
120.5 |
| C5' |
O5' |
S |
119.3 |
114.0 |
| O5' |
C5' |
H13 |
109.8 |
109.5 |
| O5' |
C5' |
H14 |
109.8 |
109.5 |
| OG |
CB |
H5 |
109.3 |
109.5 |
| OG |
CB |
H6 |
109.3 |
109.5 |
| O2S |
S |
O5' |
108.3 |
106.4 |
| O2S |
S |
N3S |
107.3 |
106.4 |
| CB |
CA |
H4 |
109.0 |
109.5 |
| S |
N3S |
H16 |
117.8 |
120.0 |
| C |
CA |
H4 |
109.5 |
109.5 |
| CA |
N |
H1 |
109.5 |
111.0 |
| CA |
N |
H2 |
109.5 |
111.0 |
| H1 |
N |
H2 |
109.5 |
111.0 |
| H5 |
CB |
H6 |
109.5 |
109.4 |
| H13 |
C5' |
H14 |
109.5 |
109.5 |
| H17 |
N4 |
H18 |
120.0 |
119.9 |
Torsion Angles for FZQ
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O2' |
C2' |
C1' |
O4' |
110.4 |
142.6 |
| O2' |
C2' |
C1' |
H8 |
352.8 |
23.8 |
| C3' |
C2' |
O2' |
H9 |
236.7 |
237.3 |
| O2' |
C2' |
C3' |
H10 |
151.3 |
122.7 |
| C2' |
C1' |
N1 |
C2 |
118.4 |
298.1 |
| N1 |
C1' |
C2' |
O4' |
121.2 |
118.8 |
| C2' |
C1' |
N1 |
C6 |
294.8 |
118.1 |
| N1 |
C1' |
C2' |
H8 |
238.9 |
237.7 |
| C2' |
C1' |
O4' |
C4' |
343.0 |
319.5 |
| O4' |
C1' |
C2' |
H8 |
117.7 |
118.9 |
| O2' |
C2' |
C3' |
H9 |
124.3 |
122.7 |
| C3' |
C2' |
C1' |
N1 |
113.8 |
142.8 |
| C3' |
C2' |
C1' |
O4' |
352.6 |
24.0 |
| C3' |
C2' |
C1' |
H8 |
234.9 |
265.1 |
| O3' |
C3' |
C2' |
H10 |
234.4 |
237.3 |
| C2' |
C3' |
C4' |
O4' |
322.1 |
336.0 |
| C2' |
C3' |
C4' |
C5' |
200.6 |
217.1 |
| C4' |
C3' |
C2' |
H10 |
117.8 |
118.6 |
| C2' |
C3' |
C4' |
H11 |
78.3 |
94.8 |
| O3' |
C3' |
C2' |
H9 |
261.3 |
237.3 |
| C2' |
C3' |
O3' |
H10 |
124.7 |
122.7 |
| O3' |
C3' |
C4' |
O4' |
203.3 |
217.4 |
| C4' |
C3' |
O3' |
H10 |
237.3 |
237.3 |
| O3' |
C3' |
C4' |
H11 |
319.5 |
336.2 |
| C1' |
N1 |
C2 |
N3 |
175.8 |
180.0 |
| N3 |
C2 |
N1 |
C6 |
359.4 |
0.0 |
| C2 |
N3 |
C4 |
N4 |
184.9 |
180.0 |
| N1 |
C2 |
N3 |
C4 |
358.5 |
359.9 |
| C2 |
N1 |
C1' |
O4' |
239.0 |
53.5 |
| C1' |
N1 |
C2 |
C6 |
176.4 |
180.0 |
| C2 |
N1 |
C1' |
H8 |
357.7 |
175.8 |
| C2 |
N1 |
C6 |
H15 |
181.8 |
180.0 |
| C2' |
C1' |
N1 |
O4' |
239.4 |
244.6 |
| C2' |
C1' |
N1 |
H8 |
120.7 |
122.4 |
| C2 |
N1 |
C1' |
C6 |
183.6 |
180.0 |
| N1 |
C1' |
O4' |
C4' |
217.8 |
200.7 |
| O4' |
C1' |
N1 |
H8 |
241.3 |
237.7 |
| C1' |
N1 |
C6 |
H15 |
5.5 |
0.0 |
| C2' |
C1' |
O4' |
N1 |
125.2 |
118.8 |
| C2' |
C1' |
O4' |
H8 |
243.4 |
241.1 |
| O4' |
C1' |
N1 |
C2 |
239.0 |
53.5 |
| O4' |
C1' |
N1 |
C6 |
55.4 |
233.5 |
| N1 |
C1' |
O4' |
H8 |
118.2 |
122.2 |
| C3' |
C4' |
O4' |
C1' |
34.8 |
40.5 |
| C5' |
C4' |
O4' |
C1' |
159.9 |
159.4 |
| C1' |
O4' |
C4' |
H11 |
279.3 |
281.6 |
| C5 |
C4 |
N3 |
N4 |
177.5 |
180.0 |
| N3 |
C4 |
N4 |
H17 |
0.0 |
180.0 |
| N3 |
C4 |
N4 |
H18 |
180.0 |
0.0 |
| N3 |
C4 |
C5 |
H12 |
178.8 |
180.0 |
| C4' |
C3' |
C2' |
H9 |
144.7 |
118.7 |
| C2' |
C3' |
C4' |
H10 |
242.4 |
241.4 |
| O3' |
C3' |
C4' |
H10 |
123.6 |
122.8 |
| C1' |
O4' |
C4' |
C3' |
34.8 |
40.5 |
| C5' |
C4' |
C3' |
O4' |
238.5 |
241.1 |
| O4' |
C4' |
C3' |
H11 |
243.7 |
241.2 |
| C3' |
C4' |
C5' |
O5' |
57.2 |
185.0 |
| C5' |
C4' |
C3' |
H11 |
122.2 |
122.3 |
| C3' |
C4' |
C5' |
H13 |
177.0 |
305.0 |
| C3' |
C4' |
C5' |
H14 |
297.4 |
65.0 |
| C6 |
N1 |
C2 |
N3 |
359.4 |
0.0 |
| C1' |
N1 |
C6 |
C2 |
183.7 |
180.0 |
| C6 |
N1 |
C1' |
O4' |
55.4 |
233.5 |
| C6 |
N1 |
C1' |
H8 |
174.1 |
355.8 |
| N1 |
C6 |
C5 |
H12 |
179.0 |
180.0 |
| C4' |
O4' |
C1' |
H8 |
99.6 |
78.5 |
| C3' |
C4' |
O4' |
C5' |
234.9 |
241.1 |
| O4' |
C4' |
C3' |
H10 |
79.7 |
94.6 |
| C3' |
C4' |
O4' |
H11 |
115.5 |
118.9 |
| O4' |
C4' |
C5' |
O5' |
299.3 |
69.6 |
| C5' |
C4' |
O4' |
H11 |
240.6 |
237.7 |
| O4' |
C4' |
C5' |
H13 |
59.1 |
189.6 |
| O4' |
C4' |
C5' |
H14 |
179.5 |
309.6 |
| C1' |
O4' |
C4' |
C5' |
159.9 |
159.4 |
| C3' |
C4' |
C5' |
O4' |
117.9 |
115.4 |
| C5' |
C4' |
C3' |
H10 |
318.2 |
335.8 |
| C3' |
C4' |
C5' |
H11 |
237.8 |
237.7 |
| O4' |
C4' |
C5' |
H11 |
119.9 |
122.2 |
| C4' |
C5' |
O5' |
S |
235.4 |
180.0 |
| O5' |
C5' |
C4' |
H13 |
240.2 |
240.0 |
| O5' |
C5' |
C4' |
H14 |
119.8 |
120.0 |
| H13 |
C5' |
C4' |
H14 |
239.6 |
240.0 |
| N4 |
C4 |
C5 |
H12 |
356.3 |
0.0 |
| H17 |
N4 |
C4 |
H18 |
180.0 |
179.9 |
| C2 |
N3 |
C4 |
C5 |
2.4 |
0.0 |
| N3 |
C4 |
C5 |
N4 |
182.6 |
180.0 |
| C5 |
C4 |
N4 |
H17 |
182.5 |
360.0 |
| C5 |
C4 |
N4 |
H18 |
2.5 |
180.0 |
| C6 |
C5 |
C4 |
H12 |
180.0 |
179.9 |
| C2 |
N1 |
C6 |
C5 |
1.9 |
360.0 |
| C1' |
N1 |
C6 |
C5 |
185.5 |
180.0 |
| C6 |
C5 |
C4 |
N4 |
176.3 |
180.0 |
| C4 |
C5 |
C6 |
H12 |
180.0 |
180.1 |
| O5' |
C5' |
C4' |
O4' |
299.3 |
69.6 |
| O5' |
C5' |
C4' |
H11 |
179.3 |
307.4 |
| C4' |
C5' |
O5' |
H13 |
119.8 |
120.0 |
| C4' |
C5' |
O5' |
H14 |
240.2 |
240.0 |
| O2S |
S |
O5' |
C5' |
61.5 |
188.5 |
| H13 |
C5' |
O5' |
H14 |
120.4 |
120.0 |
| OG |
CB |
CA |
H4 |
179.6 |
54.9 |
| H5 |
CB |
OG |
H6 |
240.2 |
119.9 |
| S |
O5' |
C5' |
H13 |
115.6 |
60.0 |
| S |
O5' |
C5' |
H14 |
355.2 |
300.0 |
| O2S |
S |
O5' |
N3S |
114.7 |
113.6 |
| O5' |
S |
N3S |
H16 |
132.5 |
245.0 |
| C5' |
O5' |
S |
O2S |
61.5 |
188.5 |
| O2S |
S |
N3S |
H16 |
17.1 |
131.4 |
| C |
CA |
CB |
H4 |
119.9 |
120.1 |
| CB |
CA |
N |
H1 |
180.0 |
176.0 |
| CB |
CA |
N |
H2 |
300.0 |
300.0 |
| C5' |
O5' |
S |
N3S |
306.8 |
75.0 |
| O2S |
S |
N3S |
O5' |
244.6 |
246.5 |
| O2S |
S |
N3S |
C |
197.1 |
311.5 |
| N3S |
C |
CA |
H4 |
54.8 |
40.0 |
| CB |
CA |
C |
H4 |
240.3 |
240.0 |
| C |
CA |
N |
H1 |
300.2 |
296.0 |
| C |
CA |
N |
H2 |
60.2 |
60.0 |
| O |
C |
CA |
H4 |
233.7 |
220.0 |
| H1 |
N |
CA |
H2 |
240.0 |
236.0 |
| CA |
N |
H1 |
H2 |
120.0 |
124.0 |
| CA |
N |
H2 |
H1 |
239.9 |
236.0 |
| H4 |
CA |
N |
H1 |
60.2 |
56.1 |
| H4 |
CA |
N |
H2 |
180.2 |
180.0 |
| OG |
CB |
H5 |
H6 |
119.6 |
240.0 |
| H5 |
CB |
CA |
H4 |
59.5 |
175.0 |
| OG |
CB |
H6 |
H5 |
240.4 |
120.0 |
| H6 |
CB |
CA |
H4 |
299.7 |
294.9 |
| H7 |
OG |
CB |
H5 |
300.1 |
60.0 |
| H7 |
OG |
CB |
H6 |
59.9 |
300.0 |
| C2' |
C1' |
H8 |
N1 |
234.8 |
237.7 |
| C2' |
C1' |
H8 |
O4' |
116.5 |
115.4 |
| H8 |
C1' |
N1 |
C2 |
357.7 |
175.8 |
| N1 |
C1' |
H8 |
O4' |
241.7 |
237.7 |
| H8 |
C1' |
N1 |
C6 |
174.1 |
355.8 |
| H8 |
C1' |
O4' |
C4' |
99.6 |
78.5 |
| H9 |
C2' |
C1' |
N1 |
356.1 |
24.2 |
| H9 |
C2' |
C1' |
O4' |
234.9 |
265.3 |
| H9 |
C2' |
C1' |
H8 |
117.2 |
146.4 |
| H9 |
C2' |
C3' |
C4' |
144.7 |
118.7 |
| H9 |
C2' |
C3' |
H10 |
27.0 |
0.0 |
| C2' |
C3' |
H10 |
C4' |
112.7 |
114.6 |
| H10 |
C3' |
C2' |
H9 |
27.0 |
0.0 |
| H10 |
C3' |
C4' |
O4' |
79.7 |
94.6 |
| H10 |
C3' |
C4' |
C5' |
318.2 |
335.8 |
| H10 |
C3' |
C4' |
H11 |
196.0 |
213.4 |
| C3' |
C4' |
H11 |
O4' |
247.4 |
244.6 |
| C3' |
C4' |
H11 |
C5' |
126.8 |
122.3 |
| H11 |
C4' |
C3' |
H10 |
196.0 |
213.4 |
| C5' |
C4' |
H11 |
O4' |
120.6 |
122.3 |
| H11 |
C4' |
C5' |
O5' |
179.3 |
307.4 |
| H11 |
C4' |
C5' |
H13 |
299.1 |
67.4 |
| H11 |
C4' |
C5' |
H14 |
59.5 |
187.4 |
| H12 |
C5 |
C4 |
N4 |
356.3 |
0.0 |
| H13 |
C5' |
C4' |
O4' |
59.1 |
189.6 |
| C4' |
C5' |
H13 |
O5' |
241.2 |
240.0 |
| H13 |
C5' |
C4' |
H11 |
299.1 |
67.4 |
| C4' |
C5' |
H13 |
H14 |
120.6 |
120.0 |
| H13 |
C5' |
O5' |
S |
115.6 |
60.0 |
| O5' |
C5' |
H13 |
H14 |
239.4 |
240.0 |
| H14 |
C5' |
C4' |
O4' |
179.5 |
309.6 |
| C4' |
C5' |
H14 |
O5' |
118.8 |
120.0 |
| H14 |
C5' |
C4' |
H11 |
59.5 |
187.4 |
| C4' |
C5' |
H14 |
H13 |
239.4 |
240.0 |
| H14 |
C5' |
O5' |
S |
355.2 |
300.0 |
| O5' |
C5' |
H14 |
H13 |
120.6 |
120.0 |
| H15 |
C6 |
C5 |
H12 |
359.0 |
359.9 |
| C4 |
N4 |
H17 |
H18 |
180.0 |
180.1 |
| C4 |
N4 |
H18 |
H17 |
180.0 |
179.9 |
| H19 |
O2' |
C2' |
H9 |
56.6 |
57.3 |
| H20 |
O3' |
C3' |
H10 |
55.4 |
298.8 |