PDB Chemical Component FZK
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for FZK
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O2' |
C2' |
1.418 |
1.429 |
| O2 |
C2 |
1.223 |
1.216 |
| C2' |
C1' |
1.542 |
1.545 |
| C2' |
C3' |
1.536 |
1.545 |
| C2 |
N3 |
1.374 |
1.346 |
| C2 |
N1 |
1.383 |
1.346 |
| C1' |
N1 |
1.469 |
1.465 |
| C1' |
O4' |
1.420 |
1.444 |
| O3' |
C3' |
1.421 |
1.430 |
| N3 |
C4 |
1.383 |
1.349 |
| N1 |
C6 |
1.391 |
1.369 |
| C3' |
C4' |
1.523 |
1.545 |
| C4' |
O4' |
1.439 |
1.445 |
| C4' |
C5' |
1.507 |
1.530 |
| C4 |
O4 |
1.230 |
1.217 |
| C4 |
C5 |
1.437 |
1.416 |
| C6 |
C5 |
1.345 |
1.351 |
| C5' |
O5' |
1.462 |
1.429 |
| OG |
CB |
1.422 |
1.429 |
| O5' |
S |
1.599 |
1.521 |
| O1S |
S |
1.420 |
1.421 |
| CB |
CA |
1.529 |
1.530 |
| S |
N3S |
1.599 |
1.657 |
| S |
O2S |
1.422 |
1.420 |
| N3S |
C |
1.432 |
1.348 |
| C |
CA |
1.535 |
1.507 |
| C |
O |
1.233 |
1.213 |
| CA |
N |
1.478 |
1.468 |
| O2' |
H1 |
0.950 |
0.967 |
| C2' |
H2 |
1.100 |
1.090 |
| C1' |
H3 |
1.100 |
1.090 |
| C4' |
H4 |
1.100 |
1.089 |
| C5' |
H5 |
1.100 |
1.090 |
| C5' |
H6 |
1.100 |
1.090 |
| C3' |
H7 |
1.100 |
1.090 |
| O3' |
H8 |
0.950 |
0.967 |
| C6 |
H9 |
1.080 |
1.079 |
| C5 |
H10 |
1.080 |
1.079 |
| N3 |
H11 |
1.000 |
0.969 |
| CA |
H12 |
1.101 |
1.090 |
| CB |
H13 |
1.100 |
1.090 |
| CB |
H14 |
1.100 |
1.090 |
| N |
H15 |
1.000 |
1.009 |
| N |
H16 |
1.000 |
1.009 |
| N3S |
H18 |
1.000 |
0.970 |
| OG |
H19 |
0.950 |
0.967 |
Bond Angles for FZK
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O2' |
C2' |
C1' |
110.5 |
110.5 |
| O2' |
C2' |
C3' |
110.8 |
110.5 |
| C2' |
O2' |
H1 |
109.5 |
114.0 |
| O2' |
C2' |
H2 |
111.8 |
110.4 |
| C1' |
C2' |
C3' |
103.4 |
104.1 |
| C2' |
C1' |
N1 |
113.8 |
110.4 |
| C2' |
C1' |
O4' |
107.7 |
104.8 |
| C1' |
C2' |
H2 |
110.0 |
110.5 |
| C2' |
C1' |
H3 |
108.1 |
110.4 |
| C2' |
C3' |
C4' |
103.0 |
104.1 |
| C3' |
C2' |
H2 |
110.1 |
110.6 |
| C2' |
C3' |
H7 |
109.7 |
110.5 |
| C2 |
N3 |
H11 |
116.5 |
119.9 |
| O4' |
C1' |
N1 |
108.5 |
110.4 |
| C1' |
N1 |
C6 |
120.4 |
119.7 |
| N1 |
C1' |
H3 |
109.0 |
110.3 |
| O4' |
C1' |
H3 |
109.7 |
110.5 |
| O3' |
C3' |
H7 |
111.4 |
110.6 |
| N1 |
C6 |
C5 |
121.9 |
119.7 |
| N1 |
C6 |
H9 |
119.1 |
120.2 |
| C3' |
C4' |
H4 |
108.9 |
110.5 |
| C4' |
C5' |
O5' |
107.6 |
109.5 |
| C5' |
C4' |
H4 |
109.1 |
110.4 |
| C4' |
C5' |
H5 |
110.0 |
109.4 |
| C4' |
C5' |
H6 |
109.9 |
109.5 |
| C4 |
C5 |
H10 |
120.1 |
120.5 |
| C5 |
C6 |
H9 |
119.0 |
120.2 |
| C6 |
C5 |
H10 |
120.2 |
120.5 |
| C5' |
O5' |
S |
119.5 |
114.0 |
| O5' |
C5' |
H5 |
109.9 |
109.4 |
| O5' |
C5' |
H6 |
109.9 |
109.5 |
| OG |
CB |
H13 |
109.4 |
109.5 |
| OG |
CB |
H14 |
109.4 |
109.4 |
| O5' |
S |
O1S |
108.4 |
106.4 |
| O5' |
S |
N3S |
107.2 |
107.2 |
| O5' |
S |
O2S |
104.3 |
106.4 |
| O1S |
S |
O2S |
121.2 |
123.2 |
| CB |
CA |
N |
113.5 |
109.5 |
| CB |
CA |
H12 |
109.3 |
109.5 |
| S |
N3S |
H18 |
116.5 |
120.0 |
| N3S |
C |
O |
119.6 |
120.0 |
| CA |
C |
O |
124.0 |
120.0 |
| C |
CA |
N |
104.9 |
109.4 |
| C |
CA |
H12 |
109.2 |
109.5 |
| N |
CA |
H12 |
110.0 |
109.5 |
| CA |
N |
H15 |
109.5 |
111.0 |
| CA |
N |
H16 |
109.4 |
111.0 |
| H5 |
C5' |
H6 |
109.5 |
109.5 |
| H13 |
CB |
H14 |
109.5 |
109.5 |
| H15 |
N |
H16 |
109.4 |
111.0 |
Torsion Angles for FZK
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C1' |
C2' |
O2' |
C3' |
246.0 |
245.3 |
| O2' |
C2' |
C1' |
N1 |
238.7 |
261.5 |
| O2' |
C2' |
C1' |
O4' |
118.5 |
142.6 |
| C1' |
C2' |
O2' |
H2 |
122.9 |
122.6 |
| O2' |
C2' |
C1' |
H3 |
360.0 |
23.7 |
| O2' |
C2' |
C3' |
C4' |
263.4 |
241.4 |
| C3' |
C2' |
O2' |
H2 |
236.9 |
237.3 |
| O2' |
C2' |
C3' |
H7 |
146.5 |
122.7 |
| O2 |
C2 |
N3 |
H11 |
355.0 |
359.8 |
| O2' |
C2' |
C1' |
C3' |
118.6 |
118.7 |
| C1' |
C2' |
O2' |
H1 |
180.0 |
180.0 |
| O2' |
C2' |
C1' |
H2 |
236.1 |
237.4 |
| C1' |
C2' |
C3' |
C4' |
21.8 |
0.1 |
| C3' |
C2' |
C1' |
H2 |
117.5 |
118.7 |
| C1' |
C2' |
C3' |
H7 |
264.9 |
241.4 |
| O4' |
C1' |
C2' |
N1 |
239.7 |
241.2 |
| C2' |
C1' |
N1 |
C6 |
299.3 |
115.0 |
| N1 |
C1' |
C2' |
H3 |
238.7 |
237.8 |
| O4' |
C1' |
C2' |
H3 |
118.5 |
119.0 |
| O2' |
C2' |
C3' |
C1' |
241.6 |
241.3 |
| C3' |
C2' |
O2' |
H1 |
294.0 |
294.6 |
| O2' |
C2' |
C3' |
H2 |
124.1 |
122.6 |
| C3' |
C2' |
C1' |
N1 |
120.1 |
142.8 |
| C3' |
C2' |
C1' |
O4' |
359.9 |
24.0 |
| C1' |
C2' |
C3' |
H2 |
242.5 |
241.3 |
| C3' |
C2' |
C1' |
H3 |
241.4 |
265.0 |
| O3' |
C3' |
C2' |
H7 |
236.0 |
237.3 |
| C2' |
C3' |
C4' |
H4 |
80.9 |
94.9 |
| C2 |
N1 |
C1' |
H3 |
359.1 |
172.5 |
| C2 |
N1 |
C6 |
H9 |
177.8 |
180.2 |
| N1 |
C1' |
C2' |
C3' |
120.1 |
142.8 |
| C2' |
C1' |
N1 |
O4' |
240.2 |
244.6 |
| N1 |
C1' |
C2' |
H2 |
2.6 |
24.0 |
| C2' |
C1' |
N1 |
H3 |
120.8 |
122.3 |
| O4' |
C1' |
N1 |
H3 |
240.6 |
237.7 |
| C1' |
N1 |
C6 |
C5 |
178.5 |
180.0 |
| C1' |
N1 |
C6 |
H9 |
358.5 |
0.0 |
| O4' |
C1' |
C2' |
C3' |
359.9 |
24.0 |
| C2' |
C1' |
O4' |
N1 |
123.6 |
118.9 |
| O4' |
C1' |
C2' |
H2 |
242.4 |
265.2 |
| C2' |
C1' |
O4' |
H3 |
242.6 |
241.1 |
| O4' |
C1' |
N1 |
C6 |
59.1 |
230.4 |
| N1 |
C1' |
O4' |
H3 |
119.0 |
122.2 |
| O3' |
C3' |
C2' |
H2 |
258.4 |
237.4 |
| C2' |
C3' |
O3' |
H7 |
123.0 |
122.6 |
| O3' |
C3' |
C4' |
H4 |
321.2 |
336.3 |
| N3 |
C4 |
C5 |
H10 |
182.1 |
180.0 |
| C6 |
N1 |
C1' |
H3 |
178.5 |
352.7 |
| C5 |
C6 |
N1 |
H9 |
180.0 |
180.0 |
| N1 |
C6 |
C5 |
H10 |
179.5 |
180.0 |
| C4' |
C3' |
C2' |
H2 |
139.3 |
118.7 |
| C2' |
C3' |
C4' |
H7 |
243.2 |
241.3 |
| C5' |
C4' |
C3' |
H4 |
122.8 |
122.3 |
| C3' |
C4' |
C5' |
H5 |
176.0 |
301.8 |
| C3' |
C4' |
C5' |
H6 |
296.6 |
61.8 |
| C2' |
C3' |
C4' |
O4' |
323.7 |
336.0 |
| C4' |
O4' |
C1' |
N1 |
212.9 |
200.6 |
| C4' |
O4' |
C1' |
H3 |
93.9 |
78.4 |
| C2' |
C3' |
C4' |
C5' |
203.7 |
217.2 |
| C3' |
C4' |
C5' |
H4 |
237.3 |
237.6 |
| C4' |
C5' |
O5' |
S |
234.4 |
180.0 |
| O5' |
C5' |
C4' |
H5 |
240.3 |
240.0 |
| O5' |
C5' |
C4' |
H6 |
119.7 |
120.0 |
| H5 |
C5' |
C4' |
H6 |
239.4 |
240.0 |
| O4 |
C4 |
C5 |
H10 |
4.8 |
360.0 |
| C4 |
C5 |
C6 |
H9 |
179.5 |
180.0 |
| C6 |
C5 |
C4 |
H10 |
180.0 |
180.0 |
| N1 |
C6 |
C5 |
H9 |
180.0 |
180.0 |
| C4 |
C5 |
C6 |
H10 |
180.0 |
180.0 |
| O5' |
C5' |
C4' |
H4 |
179.0 |
304.2 |
| C4' |
C5' |
O5' |
H5 |
119.7 |
120.0 |
| C4' |
C5' |
O5' |
H6 |
240.3 |
239.9 |
| C5' |
O5' |
S |
O1S |
64.7 |
188.5 |
| C5' |
O5' |
S |
N3S |
308.4 |
75.0 |
| C5' |
O5' |
S |
O2S |
195.1 |
321.4 |
| H5 |
C5' |
O5' |
H6 |
120.6 |
120.0 |
| OG |
CB |
CA |
H12 |
181.2 |
55.0 |
| H13 |
CB |
OG |
H14 |
240.1 |
120.0 |
| S |
O5' |
C5' |
H5 |
114.6 |
60.0 |
| S |
O5' |
C5' |
H6 |
354.1 |
300.0 |
| O1S |
S |
O5' |
O2S |
229.6 |
227.1 |
| O5' |
S |
N3S |
H18 |
138.9 |
245.0 |
| O5' |
S |
O1S |
N3S |
244.1 |
245.9 |
| O5' |
S |
O1S |
O2S |
120.5 |
123.0 |
| O1S |
S |
N3S |
H18 |
22.2 |
131.5 |
| CB |
CA |
C |
O |
107.2 |
100.0 |
| C |
CA |
CB |
N |
243.0 |
240.0 |
| C |
CA |
CB |
H12 |
119.8 |
120.0 |
| N |
CA |
CB |
H12 |
236.8 |
239.9 |
| CB |
CA |
N |
H15 |
180.0 |
300.1 |
| CB |
CA |
N |
H16 |
300.0 |
64.0 |
| O5' |
S |
N3S |
O1S |
116.6 |
113.5 |
| O5' |
S |
N3S |
O2S |
248.5 |
246.4 |
| O5' |
S |
O2S |
O1S |
237.6 |
237.0 |
| O5' |
S |
O2S |
N3S |
113.5 |
114.1 |
| O2S |
S |
N3S |
H18 |
250.4 |
358.6 |
| O5' |
S |
N3S |
C |
318.9 |
65.0 |
| CA |
C |
N3S |
O |
177.6 |
180.0 |
| N3S |
C |
CA |
H12 |
49.6 |
40.0 |
| CB |
CA |
C |
N |
122.3 |
120.0 |
| CB |
CA |
C |
H12 |
240.2 |
240.0 |
| N3S |
C |
CA |
O |
182.6 |
180.0 |
| N |
CA |
C |
H12 |
117.9 |
120.0 |
| C |
CA |
N |
H15 |
299.8 |
60.0 |
| C |
CA |
N |
H16 |
59.8 |
183.9 |
| O |
C |
CA |
N |
345.0 |
340.0 |
| O |
C |
CA |
H12 |
227.0 |
220.0 |
| CB |
CA |
N |
H12 |
122.8 |
120.1 |
| N |
CA |
C |
O |
345.0 |
340.0 |
| C |
CA |
N |
H12 |
242.6 |
240.0 |
| H15 |
N |
CA |
H16 |
240.0 |
236.1 |
| H1 |
O2' |
C2' |
C1' |
180.0 |
180.0 |
| H1 |
O2' |
C2' |
C3' |
294.0 |
294.6 |
| H1 |
O2' |
C2' |
H2 |
57.1 |
57.4 |
| O2' |
C2' |
H2 |
C1' |
123.2 |
122.6 |
| O2' |
C2' |
H2 |
C3' |
236.5 |
237.3 |
| H2 |
C2' |
O2' |
H1 |
57.1 |
57.4 |
| C1' |
C2' |
H2 |
C3' |
113.3 |
114.7 |
| H2 |
C2' |
C1' |
N1 |
2.6 |
24.0 |
| H2 |
C2' |
C1' |
O4' |
242.4 |
265.2 |
| H2 |
C2' |
C1' |
H3 |
123.9 |
146.2 |
| H2 |
C2' |
C3' |
C4' |
139.3 |
118.7 |
| H2 |
C2' |
C3' |
H7 |
22.4 |
0.0 |
| H3 |
C1' |
C2' |
C3' |
241.4 |
265.0 |
| C2' |
C1' |
H3 |
N1 |
235.8 |
237.7 |
| C2' |
C1' |
H3 |
O4' |
117.1 |
115.5 |
| H3 |
C1' |
C2' |
H2 |
123.9 |
146.2 |
| O4' |
C1' |
H3 |
N1 |
118.6 |
122.3 |
| H3 |
C1' |
N1 |
C6 |
178.5 |
352.7 |
| H4 |
C4' |
C5' |
O5' |
179.0 |
304.2 |
| H4 |
C4' |
C5' |
H5 |
298.7 |
64.2 |
| H4 |
C4' |
C5' |
H6 |
59.3 |
184.2 |
| C4' |
C5' |
H5 |
O5' |
241.7 |
240.0 |
| H5 |
C5' |
C4' |
H4 |
298.7 |
64.2 |
| C4' |
C5' |
H5 |
H6 |
120.8 |
120.0 |
| H5 |
C5' |
O5' |
S |
114.6 |
60.0 |
| O5' |
C5' |
H5 |
H6 |
239.2 |
240.0 |
| C4' |
C5' |
H6 |
O5' |
118.3 |
120.0 |
| H6 |
C5' |
C4' |
H4 |
59.3 |
184.2 |
| C4' |
C5' |
H6 |
H5 |
239.1 |
240.0 |
| H6 |
C5' |
O5' |
S |
354.1 |
300.0 |
| O5' |
C5' |
H6 |
H5 |
120.8 |
119.9 |
| C2' |
C3' |
H7 |
C4' |
112.5 |
114.7 |
| H7 |
C3' |
C2' |
H2 |
22.4 |
0.0 |
| H7 |
C3' |
C4' |
H4 |
197.7 |
213.5 |
| H8 |
O3' |
C3' |
H7 |
56.9 |
298.8 |
| N1 |
C6 |
H9 |
C5 |
180.0 |
180.0 |
| H9 |
C6 |
C5 |
H10 |
359.5 |
360.0 |
| H10 |
C5 |
C6 |
H9 |
359.5 |
360.0 |
| CB |
CA |
H12 |
N |
234.8 |
239.9 |
| H12 |
CA |
C |
O |
227.0 |
220.0 |
| C |
CA |
H12 |
N |
114.7 |
120.0 |
| H12 |
CA |
N |
H15 |
57.2 |
180.0 |
| H12 |
CA |
N |
H16 |
177.2 |
303.9 |
| OG |
CB |
H13 |
H14 |
119.9 |
240.0 |
| H13 |
CB |
CA |
N |
298.0 |
54.9 |
| H13 |
CB |
CA |
H12 |
61.2 |
175.0 |
| OG |
CB |
H14 |
H13 |
240.2 |
120.0 |
| H14 |
CB |
CA |
N |
178.1 |
175.0 |
| H14 |
CB |
CA |
H12 |
301.3 |
295.1 |
| H15 |
N |
CA |
H12 |
57.2 |
180.0 |
| CA |
N |
H15 |
H16 |
120.0 |
124.0 |
| H16 |
N |
CA |
H12 |
177.2 |
303.9 |
| CA |
N |
H16 |
H15 |
240.0 |
236.0 |
| H18 |
N3S |
C |
O |
165.7 |
180.0 |
| H19 |
OG |
CB |
H13 |
300.0 |
60.0 |
| H19 |
OG |
CB |
H14 |
59.9 |
300.0 |