Atom Nomenclature for FZ1

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for FZ1

Atom Name (V3) Atom Name (V2)
C52 C52
O31 O31
C50 C50
C43 C43
C4 C4
C5 C5
C1 C1
C42 C42
N6 N6
C2 C2
C7 C7
N9 N9
C8 C8
C3 C3
C22 C22
N23 N23
C24 C24
C28 C28
C29 C29
C30 C30
C31 C31
C32 C32
N33 N33
N25 N25
C26 C26
C27 C27
C37 C37
C36 C36
C35 C35
C34 C34
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H7 H7
H8 H8
H9 H9
H10 H10
H11 H11
H12 H12
H13 H13
H14 H14
H15 H15
H16 H16
H17 H17
H18 H18
H19 H19
H20 H20
H21 H21
H22 H22
H23 H23