PDB Chemical Component FYP
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for FYP
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C01 |
C02 |
1.517 |
1.529 |
C02 |
O03 |
1.420 |
1.452 |
C04 |
C06 |
1.511 |
1.472 |
C04 |
O03 |
1.407 |
1.348 |
C04 |
O05 |
1.170 |
1.215 |
C06 |
C07 |
1.327 |
1.361 |
C06 |
N16 |
1.519 |
1.360 |
C07 |
C08 |
1.560 |
1.507 |
C08 |
N09 |
1.097 |
1.468 |
C10 |
C12 |
1.191 |
1.465 |
C10 |
N09 |
1.300 |
1.333 |
C10 |
O11 |
1.189 |
1.215 |
C12 |
C13 |
1.387 |
1.396 |
C12 |
C20 |
1.428 |
1.405 |
C13 |
C17 |
1.397 |
1.392 |
C13 |
N14 |
1.653 |
1.398 |
C15 |
N14 |
1.312 |
1.362 |
C15 |
N16 |
1.531 |
1.302 |
C17 |
C18 |
1.410 |
1.378 |
C18 |
C19 |
1.441 |
1.387 |
C19 |
C20 |
1.376 |
1.377 |
C19 |
F21 |
1.354 |
1.352 |
C22 |
N09 |
1.468 |
1.465 |
C01 |
H1 |
1.100 |
1.090 |
C01 |
H2 |
1.100 |
1.090 |
C01 |
H3 |
1.100 |
1.090 |
C02 |
H4 |
1.100 |
1.091 |
C02 |
H5 |
1.100 |
1.090 |
C08 |
H7 |
1.100 |
1.090 |
C08 |
H8 |
1.100 |
1.090 |
C15 |
H9 |
1.080 |
1.080 |
C17 |
H11 |
1.080 |
1.080 |
C18 |
H12 |
1.080 |
1.080 |
C20 |
H13 |
1.081 |
1.080 |
C22 |
H14 |
1.100 |
1.090 |
C22 |
H15 |
1.100 |
1.090 |
C22 |
H16 |
1.100 |
1.089 |
N14 |
C07 |
1.705 |
1.354 |
Bond Angles for FYP
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C01 |
C02 |
O03 |
109.4 |
109.5 |
C02 |
C01 |
H1 |
109.5 |
109.5 |
C02 |
C01 |
H2 |
109.4 |
109.5 |
C02 |
C01 |
H3 |
109.5 |
109.5 |
C01 |
C02 |
H4 |
109.5 |
109.5 |
C01 |
C02 |
H5 |
109.5 |
109.5 |
C02 |
O03 |
C04 |
113.4 |
117.0 |
O03 |
C02 |
H4 |
109.5 |
109.5 |
O03 |
C02 |
H5 |
109.5 |
109.5 |
C06 |
C04 |
O03 |
120.3 |
120.0 |
C06 |
C04 |
O05 |
120.0 |
120.0 |
C04 |
C06 |
C07 |
125.2 |
126.3 |
C04 |
C06 |
N16 |
126.4 |
126.3 |
O03 |
C04 |
O05 |
119.7 |
120.0 |
C07 |
C06 |
N16 |
108.4 |
107.3 |
C06 |
C07 |
C08 |
135.3 |
127.1 |
C06 |
N16 |
C15 |
108.9 |
109.0 |
C07 |
C08 |
N09 |
93.2 |
107.7 |
C07 |
C08 |
H7 |
113.4 |
109.8 |
C07 |
C08 |
H8 |
113.4 |
109.9 |
C08 |
N09 |
C10 |
120.4 |
121.6 |
C08 |
N09 |
C22 |
115.1 |
119.2 |
N09 |
C08 |
H7 |
113.4 |
109.8 |
N09 |
C08 |
H8 |
113.4 |
109.8 |
C12 |
C10 |
N09 |
120.5 |
127.1 |
C12 |
C10 |
O11 |
114.9 |
116.4 |
C10 |
C12 |
C13 |
99.9 |
123.4 |
C10 |
C12 |
C20 |
134.2 |
117.8 |
N09 |
C10 |
O11 |
122.2 |
116.5 |
C10 |
N09 |
C22 |
124.4 |
119.2 |
C13 |
C12 |
C20 |
125.7 |
118.9 |
C12 |
C13 |
C17 |
118.8 |
119.9 |
C12 |
C13 |
N14 |
118.9 |
122.2 |
C12 |
C20 |
C19 |
115.2 |
120.5 |
C12 |
C20 |
H13 |
122.4 |
119.8 |
C17 |
C13 |
N14 |
122.2 |
117.8 |
C13 |
C17 |
C18 |
117.3 |
120.5 |
C13 |
C17 |
H11 |
121.4 |
119.8 |
C13 |
N14 |
C15 |
126.1 |
126.6 |
N14 |
C15 |
N16 |
108.5 |
108.8 |
N14 |
C15 |
H9 |
125.7 |
125.6 |
N16 |
C15 |
H9 |
125.8 |
125.6 |
C17 |
C18 |
C19 |
122.5 |
120.0 |
C18 |
C17 |
H11 |
121.3 |
119.7 |
C17 |
C18 |
H12 |
118.7 |
120.1 |
C18 |
C19 |
C20 |
120.4 |
120.2 |
C18 |
C19 |
F21 |
119.5 |
119.9 |
C19 |
C18 |
H12 |
118.7 |
120.0 |
C20 |
C19 |
F21 |
120.1 |
119.9 |
C19 |
C20 |
H13 |
122.4 |
119.8 |
N09 |
C22 |
H14 |
109.5 |
109.4 |
N09 |
C22 |
H15 |
109.5 |
109.5 |
N09 |
C22 |
H16 |
109.5 |
109.5 |
H1 |
C01 |
H2 |
109.5 |
109.5 |
H1 |
C01 |
H3 |
109.5 |
109.5 |
H2 |
C01 |
H3 |
109.5 |
109.5 |
H4 |
C02 |
H5 |
109.5 |
109.4 |
H7 |
C08 |
H8 |
109.5 |
109.9 |
H14 |
C22 |
H15 |
109.5 |
109.4 |
H14 |
C22 |
H16 |
109.5 |
109.5 |
H15 |
C22 |
H16 |
109.4 |
109.5 |
Torsion Angles for FYP
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C01 |
C02 |
O03 |
C04 |
86.3 |
180.0 |
O03 |
C02 |
C01 |
H4 |
240.0 |
240.0 |
O03 |
C02 |
C01 |
H5 |
120.0 |
120.0 |
H1 |
C01 |
C02 |
H2 |
240.0 |
240.0 |
H1 |
C01 |
C02 |
H3 |
120.0 |
120.0 |
H2 |
C01 |
C02 |
H3 |
240.0 |
240.0 |
H4 |
C02 |
C01 |
H5 |
239.9 |
240.0 |
O03 |
C02 |
C01 |
H1 |
180.0 |
180.0 |
O03 |
C02 |
C01 |
H2 |
300.0 |
300.0 |
O03 |
C02 |
C01 |
H3 |
60.0 |
60.0 |
C01 |
C02 |
O03 |
H4 |
120.0 |
120.0 |
C01 |
C02 |
O03 |
H5 |
240.0 |
239.9 |
C06 |
C04 |
O03 |
C02 |
109.3 |
180.0 |
C02 |
O03 |
C04 |
O05 |
288.9 |
0.1 |
H4 |
C02 |
O03 |
H5 |
120.0 |
119.9 |
C02 |
O03 |
C04 |
C06 |
109.3 |
180.0 |
O03 |
C04 |
C06 |
O05 |
179.6 |
180.1 |
C07 |
C06 |
C04 |
N16 |
180.0 |
180.3 |
C04 |
C06 |
C07 |
C08 |
0.1 |
1.9 |
C04 |
C06 |
N16 |
C15 |
180.0 |
179.5 |
C04 |
O03 |
C02 |
H4 |
326.3 |
60.0 |
C04 |
O03 |
C02 |
H5 |
206.3 |
300.1 |
C06 |
C04 |
O03 |
O05 |
180.4 |
179.9 |
O03 |
C04 |
C06 |
C07 |
184.8 |
180.0 |
O03 |
C04 |
C06 |
N16 |
4.9 |
359.7 |
C06 |
C04 |
O05 |
O03 |
179.6 |
180.1 |
O05 |
C04 |
C06 |
C07 |
5.2 |
359.9 |
O05 |
C04 |
C06 |
N16 |
185.2 |
179.6 |
C07 |
C06 |
C04 |
O03 |
184.8 |
180.0 |
C07 |
C06 |
C04 |
O05 |
5.2 |
359.9 |
C04 |
C06 |
C07 |
N16 |
180.0 |
179.7 |
C07 |
C06 |
N16 |
C15 |
0.1 |
359.3 |
C06 |
C07 |
C08 |
N09 |
193.1 |
119.9 |
C06 |
C07 |
C08 |
H7 |
310.2 |
239.4 |
C06 |
C07 |
C08 |
H8 |
75.9 |
0.4 |
N16 |
C06 |
C04 |
O03 |
4.9 |
359.7 |
N16 |
C06 |
C04 |
O05 |
185.2 |
179.6 |
C04 |
C06 |
N16 |
C07 |
180.0 |
180.3 |
N16 |
C06 |
C07 |
C08 |
180.1 |
182.2 |
N14 |
C15 |
N16 |
C06 |
359.8 |
359.6 |
C06 |
N16 |
C15 |
H9 |
179.8 |
179.3 |
C08 |
C07 |
C06 |
N16 |
180.1 |
182.2 |
C07 |
C08 |
N09 |
C10 |
279.6 |
60.9 |
C07 |
C08 |
N09 |
C22 |
96.3 |
240.8 |
N09 |
C08 |
C07 |
H7 |
242.8 |
240.5 |
N09 |
C08 |
C07 |
H8 |
117.2 |
119.5 |
H7 |
C08 |
C07 |
H8 |
234.4 |
239.0 |
C07 |
C08 |
N09 |
H7 |
117.2 |
119.5 |
C07 |
C08 |
N09 |
H8 |
242.8 |
240.4 |
C12 |
C10 |
N09 |
C08 |
163.9 |
358.7 |
C08 |
N09 |
C10 |
O11 |
2.3 |
178.7 |
C10 |
N09 |
C08 |
C22 |
183.3 |
180.1 |
C08 |
N09 |
C22 |
H14 |
180.0 |
90.0 |
C08 |
N09 |
C22 |
H15 |
300.0 |
210.0 |
C08 |
N09 |
C22 |
H16 |
60.0 |
330.0 |
H7 |
C08 |
N09 |
H8 |
125.6 |
120.9 |
C08 |
N09 |
C10 |
C12 |
163.9 |
358.7 |
N09 |
C10 |
C12 |
O11 |
197.2 |
180.0 |
C12 |
C10 |
N09 |
C22 |
347.6 |
178.8 |
C13 |
C12 |
C10 |
C20 |
175.0 |
179.7 |
C10 |
C12 |
C13 |
C17 |
180.6 |
182.2 |
C10 |
C12 |
C13 |
N14 |
3.6 |
4.4 |
C10 |
C12 |
C20 |
C19 |
177.0 |
178.5 |
C10 |
C12 |
C20 |
H13 |
357.0 |
358.6 |
C08 |
N09 |
C10 |
C22 |
176.3 |
179.9 |
C10 |
N09 |
C08 |
H7 |
162.4 |
301.4 |
C10 |
N09 |
C08 |
H8 |
36.8 |
180.4 |
C12 |
C10 |
N09 |
O11 |
161.6 |
180.0 |
N09 |
C10 |
C12 |
C13 |
284.9 |
318.6 |
N09 |
C10 |
C12 |
C20 |
109.9 |
138.9 |
C10 |
N09 |
C22 |
H14 |
356.5 |
269.9 |
C10 |
N09 |
C22 |
H15 |
116.5 |
29.9 |
C10 |
N09 |
C22 |
H16 |
236.5 |
150.0 |
C12 |
C10 |
O11 |
N09 |
197.5 |
180.0 |
O11 |
C10 |
C12 |
C13 |
87.8 |
138.5 |
O11 |
C10 |
C12 |
C20 |
272.7 |
318.8 |
O11 |
C10 |
N09 |
C22 |
186.0 |
358.8 |
C13 |
C12 |
C10 |
N09 |
284.9 |
318.6 |
C13 |
C12 |
C10 |
O11 |
87.8 |
138.5 |
C10 |
C12 |
C13 |
C20 |
184.4 |
180.3 |
C13 |
C12 |
C20 |
C19 |
3.0 |
358.8 |
C13 |
C12 |
C20 |
H13 |
183.0 |
178.9 |
C17 |
C13 |
C12 |
N14 |
177.0 |
177.8 |
C12 |
C13 |
C17 |
C18 |
2.5 |
358.6 |
C12 |
C13 |
C17 |
H11 |
182.5 |
178.6 |
C12 |
C13 |
N14 |
C15 |
198.2 |
215.0 |
C20 |
C12 |
C10 |
N09 |
109.9 |
138.9 |
C20 |
C12 |
C10 |
O11 |
272.7 |
318.8 |
C10 |
C12 |
C20 |
C13 |
174.0 |
179.7 |
C20 |
C12 |
C13 |
C17 |
356.2 |
1.9 |
C20 |
C12 |
C13 |
N14 |
179.2 |
184.1 |
C18 |
C19 |
C20 |
C12 |
358.9 |
359.9 |
C12 |
C20 |
C19 |
F21 |
179.0 |
179.8 |
C19 |
C20 |
C12 |
H13 |
180.0 |
179.9 |
C17 |
C13 |
C12 |
C20 |
356.2 |
1.9 |
C12 |
C13 |
C17 |
N14 |
183.1 |
182.1 |
C17 |
C13 |
N14 |
C15 |
21.3 |
37.2 |
C13 |
C17 |
C18 |
C19 |
359.2 |
0.1 |
C18 |
C17 |
C13 |
H11 |
180.0 |
180.0 |
C13 |
C17 |
C18 |
H12 |
179.2 |
180.0 |
N14 |
C13 |
C12 |
C20 |
179.2 |
184.1 |
C12 |
C13 |
N14 |
C17 |
176.9 |
177.8 |
N14 |
C13 |
C17 |
C18 |
179.3 |
176.5 |
N14 |
C13 |
C17 |
H11 |
359.4 |
356.5 |
C13 |
N14 |
C15 |
N16 |
179.5 |
182.5 |
C13 |
N14 |
C15 |
H9 |
359.5 |
2.8 |
C06 |
N16 |
C15 |
N14 |
359.8 |
359.6 |
N16 |
C15 |
N14 |
H9 |
180.0 |
179.7 |
N14 |
C15 |
N16 |
H9 |
180.0 |
180.3 |
C18 |
C17 |
C13 |
N14 |
179.3 |
176.5 |
C13 |
C17 |
C18 |
H11 |
180.0 |
180.0 |
C17 |
C18 |
C19 |
C20 |
0.2 |
0.6 |
C17 |
C18 |
C19 |
F21 |
180.1 |
180.7 |
C19 |
C18 |
C17 |
H12 |
180.0 |
180.1 |
C12 |
C20 |
C19 |
C18 |
358.9 |
359.9 |
C19 |
C18 |
C17 |
H11 |
179.1 |
180.1 |
C17 |
C18 |
C19 |
H12 |
180.0 |
179.9 |
C20 |
C19 |
C18 |
F21 |
180.1 |
179.9 |
C18 |
C19 |
C20 |
H13 |
178.8 |
179.9 |
C12 |
C20 |
C19 |
H13 |
180.0 |
180.1 |
C18 |
C19 |
C20 |
F21 |
179.8 |
180.1 |
C20 |
C19 |
C18 |
H12 |
180.2 |
180.7 |
C18 |
C19 |
F21 |
C20 |
180.1 |
179.9 |
F21 |
C19 |
C18 |
H12 |
0.0 |
0.8 |
F21 |
C19 |
C20 |
H13 |
359.0 |
359.8 |
C08 |
N09 |
C22 |
C10 |
183.5 |
180.1 |
C22 |
N09 |
C08 |
H7 |
339.1 |
121.3 |
C22 |
N09 |
C08 |
H8 |
213.5 |
0.3 |
C22 |
N09 |
C10 |
O11 |
186.0 |
358.8 |
H14 |
C22 |
N09 |
H15 |
240.0 |
240.0 |
H14 |
C22 |
N09 |
H16 |
120.0 |
120.0 |
H15 |
C22 |
N09 |
H16 |
240.0 |
239.9 |
H1 |
C01 |
C02 |
O03 |
180.0 |
180.0 |
C02 |
C01 |
H1 |
H2 |
120.0 |
120.0 |
C02 |
C01 |
H1 |
H3 |
240.0 |
240.0 |
H1 |
C01 |
C02 |
H4 |
300.0 |
300.0 |
H1 |
C01 |
C02 |
H5 |
60.0 |
60.0 |
H2 |
C01 |
H1 |
H3 |
120.0 |
120.0 |
H2 |
C01 |
C02 |
O03 |
300.0 |
300.0 |
C02 |
C01 |
H2 |
H1 |
240.0 |
240.0 |
C02 |
C01 |
H2 |
H3 |
120.0 |
120.0 |
H2 |
C01 |
C02 |
H4 |
60.0 |
60.0 |
H2 |
C01 |
C02 |
H5 |
180.1 |
180.0 |
H1 |
C01 |
H2 |
H3 |
240.0 |
240.0 |
H3 |
C01 |
C02 |
O03 |
60.0 |
60.0 |
C02 |
C01 |
H3 |
H1 |
120.0 |
120.0 |
C02 |
C01 |
H3 |
H2 |
240.0 |
240.0 |
H3 |
C01 |
C02 |
H4 |
180.0 |
180.0 |
H3 |
C01 |
C02 |
H5 |
300.0 |
300.0 |
H1 |
C01 |
H3 |
H2 |
120.0 |
120.0 |
C01 |
C02 |
H4 |
O03 |
240.0 |
240.0 |
H4 |
C02 |
C01 |
H1 |
300.0 |
300.0 |
H4 |
C02 |
C01 |
H2 |
60.0 |
60.0 |
H4 |
C02 |
C01 |
H3 |
180.0 |
180.0 |
C01 |
C02 |
H4 |
H5 |
120.1 |
120.1 |
H4 |
C02 |
O03 |
C04 |
326.3 |
60.0 |
O03 |
C02 |
H4 |
H5 |
240.0 |
240.1 |
C01 |
C02 |
H5 |
O03 |
119.9 |
120.0 |
H5 |
C02 |
C01 |
H1 |
60.0 |
60.0 |
H5 |
C02 |
C01 |
H2 |
180.1 |
180.0 |
H5 |
C02 |
C01 |
H3 |
300.0 |
300.0 |
C01 |
C02 |
H5 |
H4 |
239.9 |
240.0 |
H5 |
C02 |
O03 |
C04 |
206.3 |
300.1 |
O03 |
C02 |
H5 |
H4 |
120.0 |
120.0 |
C07 |
C08 |
H7 |
N09 |
255.4 |
241.8 |
C07 |
C08 |
H7 |
H8 |
127.7 |
120.9 |
H7 |
C08 |
N09 |
C10 |
162.4 |
301.4 |
H7 |
C08 |
N09 |
C22 |
339.1 |
121.3 |
N09 |
C08 |
H7 |
H8 |
232.3 |
239.1 |
C07 |
C08 |
H8 |
N09 |
104.6 |
118.2 |
C07 |
C08 |
H8 |
H7 |
232.3 |
239.1 |
H8 |
C08 |
N09 |
C10 |
36.8 |
180.4 |
H8 |
C08 |
N09 |
C22 |
213.5 |
0.3 |
N09 |
C08 |
H8 |
H7 |
127.7 |
120.9 |
N14 |
C15 |
H9 |
N16 |
180.0 |
179.7 |
H11 |
C17 |
C13 |
N14 |
359.4 |
356.5 |
C13 |
C17 |
H11 |
C18 |
180.0 |
180.0 |
H11 |
C17 |
C18 |
C19 |
179.1 |
180.1 |
H11 |
C17 |
C18 |
H12 |
359.2 |
0.0 |
C17 |
C18 |
H12 |
C19 |
180.0 |
180.1 |
H12 |
C18 |
C17 |
H11 |
359.2 |
0.0 |
H12 |
C18 |
C19 |
C20 |
180.2 |
180.7 |
H12 |
C18 |
C19 |
F21 |
0.0 |
0.8 |
C12 |
C20 |
H13 |
C19 |
180.0 |
179.9 |
H13 |
C20 |
C19 |
F21 |
359.0 |
359.8 |
N09 |
C22 |
H14 |
H15 |
120.0 |
120.0 |
N09 |
C22 |
H14 |
H16 |
240.0 |
240.0 |
H15 |
C22 |
H14 |
H16 |
119.9 |
120.0 |
N09 |
C22 |
H15 |
H14 |
240.0 |
240.1 |
N09 |
C22 |
H15 |
H16 |
120.0 |
120.1 |
H14 |
C22 |
H15 |
H16 |
240.0 |
240.0 |
N09 |
C22 |
H16 |
H14 |
120.0 |
120.0 |
N09 |
C22 |
H16 |
H15 |
240.0 |
239.9 |
H14 |
C22 |
H16 |
H15 |
120.0 |
120.0 |
N14 |
C07 |
C06 |
N16 |
0.0 |
1.5 |
N14 |
C07 |
C08 |
H7 |
130.4 |
60.1 |
N14 |
C07 |
C08 |
H8 |
256.0 |
181.1 |