PDB Chemical Component FYB
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for FYB
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
O2 |
C10 |
|
1.218 |
C10 |
C11 |
|
1.477 |
C10 |
C9 |
|
1.473 |
F2 |
C13 |
|
1.351 |
C12 |
C11 |
|
1.393 |
C12 |
C13 |
|
1.380 |
C11 |
C16 |
|
1.406 |
C9 |
C8 |
|
1.355 |
C13 |
C14 |
|
1.390 |
C16 |
C15 |
|
1.391 |
C16 |
O3 |
|
1.346 |
C8 |
O3 |
|
1.339 |
C8 |
C7 |
|
1.482 |
C14 |
C15 |
|
1.377 |
O1 |
C7 |
|
1.214 |
C7 |
N |
|
1.347 |
N |
C6 |
|
1.465 |
C1 |
C2 |
|
1.530 |
C1 |
C |
|
1.530 |
C2 |
C3 |
|
1.530 |
F |
C3 |
|
1.398 |
C6 |
C |
|
1.530 |
C3 |
F1 |
|
1.399 |
C3 |
C4 |
|
1.530 |
C |
O |
|
1.429 |
C |
C5 |
|
1.531 |
C5 |
C4 |
|
1.530 |
C2 |
H1 |
|
1.091 |
C2 |
H2 |
|
1.090 |
C1 |
H3 |
|
1.090 |
C1 |
H4 |
|
1.091 |
C9 |
H5 |
|
1.080 |
C4 |
H6 |
|
1.091 |
C4 |
H7 |
|
1.090 |
C5 |
H8 |
|
1.090 |
C5 |
H9 |
|
1.090 |
C15 |
H10 |
|
1.081 |
C12 |
H11 |
|
1.080 |
C14 |
H12 |
|
1.080 |
N |
H13 |
|
0.970 |
C6 |
H14 |
|
1.090 |
C6 |
H15 |
|
1.090 |
O |
H16 |
|
0.967 |
Bond Angles for FYB
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C9 |
C10 |
C11 |
|
115.8 |
C10 |
C11 |
C12 |
|
121.4 |
C10 |
C11 |
C16 |
|
118.0 |
C10 |
C9 |
C8 |
|
118.1 |
C10 |
C9 |
H5 |
|
121.0 |
F2 |
C13 |
C14 |
|
120.0 |
C11 |
C12 |
H11 |
|
120.2 |
C12 |
C13 |
C14 |
|
120.1 |
C11 |
C16 |
O3 |
|
120.5 |
C9 |
C8 |
O3 |
|
123.1 |
C9 |
C8 |
C7 |
|
118.5 |
C13 |
C14 |
C15 |
|
120.8 |
C13 |
C14 |
H12 |
|
119.5 |
C16 |
C15 |
H10 |
|
120.0 |
C8 |
O3 |
C16 |
|
121.2 |
C7 |
C8 |
O3 |
|
118.4 |
C8 |
C7 |
N |
|
120.0 |
C14 |
C15 |
H10 |
|
119.9 |
O1 |
C7 |
N |
|
120.1 |
C7 |
N |
C6 |
|
120.0 |
C7 |
N |
H13 |
|
120.0 |
N |
C6 |
C |
|
109.5 |
C6 |
N |
H13 |
|
120.0 |
N |
C6 |
H14 |
|
109.4 |
N |
C6 |
H15 |
|
109.4 |
C1 |
C2 |
C3 |
|
109.5 |
C1 |
C2 |
H1 |
|
109.5 |
C1 |
C2 |
H2 |
|
109.5 |
C1 |
C |
C6 |
|
109.5 |
C1 |
C |
O |
|
109.5 |
C1 |
C |
C5 |
|
109.4 |
C |
C1 |
H3 |
|
109.5 |
C |
C1 |
H4 |
|
109.5 |
C2 |
C3 |
F1 |
|
109.5 |
C2 |
C3 |
C4 |
|
109.5 |
C3 |
C2 |
H1 |
|
109.5 |
C3 |
C2 |
H2 |
|
109.5 |
F |
C3 |
F1 |
|
109.5 |
C6 |
C |
O |
|
109.5 |
C |
C6 |
H14 |
|
109.4 |
C |
C6 |
H15 |
|
109.5 |
C4 |
C3 |
F1 |
|
109.4 |
C3 |
C4 |
H6 |
|
109.5 |
C3 |
C4 |
H7 |
|
109.5 |
C |
O |
H16 |
|
114.0 |
C |
C5 |
H8 |
|
109.4 |
C |
C5 |
H9 |
|
109.4 |
C5 |
C4 |
H6 |
|
109.5 |
C5 |
C4 |
H7 |
|
109.5 |
H1 |
C2 |
H2 |
|
109.5 |
H3 |
C1 |
H4 |
|
109.4 |
H6 |
C4 |
H7 |
|
109.4 |
H8 |
C5 |
H9 |
|
109.5 |
H14 |
C6 |
H15 |
|
109.5 |
Torsion Angles for FYB
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
O2 |
C10 |
C9 |
H5 |
|
347.2 |
C11 |
C10 |
C9 |
C8 |
|
347.2 |
C11 |
C10 |
C9 |
H5 |
|
167.2 |
C10 |
C11 |
C12 |
H11 |
|
359.6 |
C10 |
C11 |
C16 |
O3 |
|
1.0 |
C9 |
C10 |
C11 |
C12 |
|
192.9 |
C9 |
C10 |
C11 |
C16 |
|
12.7 |
C10 |
C9 |
C8 |
O3 |
|
358.8 |
C10 |
C9 |
C8 |
C7 |
|
179.3 |
C12 |
C13 |
F2 |
C14 |
|
180.2 |
F2 |
C13 |
C14 |
C15 |
|
180.2 |
F2 |
C13 |
C14 |
H12 |
|
0.1 |
C10 |
C11 |
C12 |
C16 |
|
179.9 |
C11 |
C12 |
C13 |
C14 |
|
359.9 |
C12 |
C11 |
C16 |
O3 |
|
180.9 |
F2 |
C13 |
C12 |
C14 |
|
179.8 |
C12 |
C13 |
C14 |
C15 |
|
0.0 |
C12 |
C13 |
C14 |
H12 |
|
179.9 |
C10 |
C11 |
C16 |
C12 |
|
180.1 |
C11 |
C16 |
C15 |
H10 |
|
179.7 |
C8 |
O3 |
C16 |
C11 |
|
344.1 |
C8 |
C9 |
C10 |
C11 |
|
347.2 |
C10 |
C9 |
C8 |
H5 |
|
180.0 |
C9 |
C8 |
O3 |
C16 |
|
16.3 |
C7 |
C8 |
C9 |
O3 |
|
180.5 |
C9 |
C8 |
C7 |
N |
|
179.5 |
C13 |
C14 |
C15 |
H10 |
|
180.0 |
C10 |
C11 |
C16 |
C15 |
|
180.8 |
C13 |
C14 |
C15 |
C16 |
|
0.4 |
C8 |
O3 |
C16 |
C15 |
|
164.3 |
C14 |
C15 |
C16 |
H10 |
|
179.6 |
O3 |
C16 |
C15 |
H10 |
|
359.5 |
C7 |
C8 |
O3 |
C16 |
|
195.8 |
C11 |
C16 |
O3 |
C8 |
|
344.1 |
C9 |
C8 |
O3 |
C7 |
|
180.5 |
O3 |
C8 |
C7 |
N |
|
359.9 |
C9 |
C8 |
C7 |
O3 |
|
179.5 |
O1 |
C7 |
C8 |
N |
|
180.0 |
C8 |
C7 |
N |
C6 |
|
180.0 |
C8 |
C7 |
N |
H13 |
|
0.1 |
C13 |
C14 |
C15 |
H12 |
|
179.9 |
C16 |
C15 |
C14 |
H10 |
|
180.4 |
C8 |
C7 |
O1 |
N |
|
180.0 |
O1 |
C7 |
N |
C6 |
|
360.0 |
O1 |
C7 |
N |
H13 |
|
180.0 |
N |
C7 |
C8 |
O3 |
|
359.9 |
C7 |
N |
C6 |
C |
|
180.0 |
C6 |
N |
C7 |
H13 |
|
179.9 |
C7 |
N |
C6 |
H14 |
|
300.0 |
C7 |
N |
C6 |
H15 |
|
60.0 |
C7 |
N |
C6 |
H13 |
|
180.1 |
C1 |
C |
C6 |
N |
|
185.0 |
N |
C6 |
C |
O |
|
65.0 |
C |
C6 |
N |
H14 |
|
240.0 |
C |
C6 |
N |
H15 |
|
120.1 |
H14 |
C6 |
N |
H15 |
|
240.0 |
C1 |
C2 |
C3 |
F1 |
|
180.0 |
C1 |
C2 |
C3 |
C4 |
|
60.0 |
C3 |
C2 |
C1 |
H1 |
|
240.0 |
C3 |
C2 |
C1 |
H2 |
|
120.0 |
H1 |
C2 |
C1 |
H2 |
|
240.0 |
N |
C6 |
C |
C1 |
|
185.0 |
C |
C1 |
C2 |
C3 |
|
300.0 |
C |
C1 |
C2 |
H1 |
|
60.0 |
C |
C1 |
C2 |
H2 |
|
180.0 |
C6 |
C |
C1 |
O |
|
240.0 |
C1 |
C |
C6 |
H14 |
|
65.0 |
C1 |
C |
C6 |
H15 |
|
305.0 |
C1 |
C |
O |
H16 |
|
180.0 |
C1 |
C |
C5 |
H8 |
|
180.0 |
C1 |
C |
C5 |
H9 |
|
60.1 |
H3 |
C1 |
C |
H4 |
|
119.9 |
C1 |
C2 |
C3 |
H1 |
|
120.0 |
C1 |
C2 |
C3 |
H2 |
|
240.0 |
F |
C3 |
C2 |
F1 |
|
120.0 |
C4 |
C3 |
C2 |
F1 |
|
240.1 |
C2 |
C3 |
C4 |
H6 |
|
60.0 |
C2 |
C3 |
C4 |
H7 |
|
179.9 |
H1 |
C2 |
C3 |
H2 |
|
120.0 |
C2 |
C3 |
F |
F1 |
|
240.0 |
F |
C3 |
C2 |
H1 |
|
180.0 |
F |
C3 |
C2 |
H2 |
|
60.0 |
C4 |
C3 |
F |
F1 |
|
120.0 |
F |
C3 |
C4 |
H6 |
|
180.0 |
F |
C3 |
C4 |
H7 |
|
300.0 |
C |
C6 |
N |
H13 |
|
360.0 |
N |
C6 |
C |
H14 |
|
120.0 |
N |
C6 |
C |
H15 |
|
240.0 |
C1 |
C |
C6 |
O |
|
120.0 |
C1 |
C |
C6 |
C5 |
|
240.0 |
C6 |
C |
C1 |
H3 |
|
59.9 |
C6 |
C |
C1 |
H4 |
|
300.0 |
C6 |
C |
O |
H16 |
|
300.0 |
C6 |
C |
C5 |
H8 |
|
60.0 |
C6 |
C |
C5 |
H9 |
|
300.0 |
H14 |
C6 |
C |
H15 |
|
120.0 |
C2 |
C3 |
F1 |
C4 |
|
240.1 |
F1 |
C3 |
C2 |
H1 |
|
60.0 |
F1 |
C3 |
C2 |
H2 |
|
300.0 |
F1 |
C3 |
C4 |
H6 |
|
300.0 |
F1 |
C3 |
C4 |
H7 |
|
60.0 |
C2 |
C3 |
C4 |
F1 |
|
120.0 |
C4 |
C3 |
C2 |
H1 |
|
300.0 |
C4 |
C3 |
C2 |
H2 |
|
180.0 |
F |
C3 |
C4 |
F1 |
|
240.0 |
C5 |
C4 |
C3 |
H6 |
|
240.0 |
C5 |
C4 |
C3 |
H7 |
|
120.0 |
H6 |
C4 |
C3 |
H7 |
|
240.0 |
C1 |
C |
O |
C6 |
|
240.0 |
C1 |
C |
O |
C5 |
|
120.0 |
O |
C |
C1 |
H3 |
|
180.0 |
O |
C |
C1 |
H4 |
|
60.0 |
O |
C |
C6 |
H14 |
|
305.0 |
O |
C |
C6 |
H15 |
|
185.0 |
O |
C |
C5 |
H8 |
|
300.0 |
O |
C |
C5 |
H9 |
|
180.0 |
C1 |
C |
C5 |
C6 |
|
120.0 |
C1 |
C |
C5 |
O |
|
240.0 |
C5 |
C |
C1 |
H3 |
|
299.9 |
C5 |
C |
C1 |
H4 |
|
180.0 |
C |
C5 |
C4 |
H6 |
|
300.0 |
C |
C5 |
C4 |
H7 |
|
180.0 |
H8 |
C5 |
C |
H9 |
|
120.0 |
C1 |
C |
C5 |
C4 |
|
300.0 |
C5 |
C4 |
C3 |
F1 |
|
180.0 |
C3 |
C4 |
C5 |
H6 |
|
120.0 |
C3 |
C4 |
C5 |
H7 |
|
240.0 |
H6 |
C4 |
C5 |
H7 |
|
120.0 |
C1 |
C2 |
H1 |
C3 |
|
240.0 |
C1 |
C2 |
H1 |
H2 |
|
120.0 |
H1 |
C2 |
C3 |
F1 |
|
60.0 |
H1 |
C2 |
C3 |
C4 |
|
300.0 |
C3 |
C2 |
H1 |
H2 |
|
240.0 |
C1 |
C2 |
H2 |
C3 |
|
120.0 |
C1 |
C2 |
H2 |
H1 |
|
240.0 |
H2 |
C2 |
C3 |
F1 |
|
300.0 |
H2 |
C2 |
C3 |
C4 |
|
180.0 |
C3 |
C2 |
H2 |
H1 |
|
120.0 |
H3 |
C1 |
C2 |
C3 |
|
60.0 |
H3 |
C1 |
C2 |
H1 |
|
180.0 |
H3 |
C1 |
C2 |
H2 |
|
300.0 |
H3 |
C1 |
C |
C6 |
|
59.9 |
H3 |
C1 |
C |
O |
|
180.0 |
H3 |
C1 |
C |
C5 |
|
299.9 |
C |
C1 |
H3 |
H4 |
|
240.1 |
H4 |
C1 |
C2 |
C3 |
|
180.0 |
H4 |
C1 |
C2 |
H1 |
|
300.0 |
H4 |
C1 |
C2 |
H2 |
|
60.0 |
H4 |
C1 |
C |
C6 |
|
300.0 |
H4 |
C1 |
C |
O |
|
60.0 |
H4 |
C1 |
C |
C5 |
|
180.0 |
C |
C1 |
H4 |
H3 |
|
119.9 |
H5 |
C9 |
C10 |
C11 |
|
167.2 |
C10 |
C9 |
H5 |
C8 |
|
180.0 |
H5 |
C9 |
C8 |
O3 |
|
178.9 |
H5 |
C9 |
C8 |
C7 |
|
359.4 |
H6 |
C4 |
C3 |
F1 |
|
300.0 |
C3 |
C4 |
H6 |
H7 |
|
120.0 |
C5 |
C4 |
H6 |
H7 |
|
240.0 |
H7 |
C4 |
C3 |
F1 |
|
60.0 |
C3 |
C4 |
H7 |
H6 |
|
240.0 |
C5 |
C4 |
H7 |
H6 |
|
120.0 |
C |
C5 |
H8 |
H9 |
|
240.1 |
H8 |
C5 |
C4 |
H6 |
|
60.0 |
H8 |
C5 |
C4 |
H7 |
|
300.0 |
C |
C5 |
H9 |
H8 |
|
119.9 |
H9 |
C5 |
C4 |
H6 |
|
180.0 |
H9 |
C5 |
C4 |
H7 |
|
60.0 |
H11 |
C12 |
C13 |
C14 |
|
179.9 |
C13 |
C14 |
H12 |
C15 |
|
180.1 |
H12 |
C14 |
C15 |
H10 |
|
0.1 |
C7 |
N |
H13 |
C6 |
|
179.9 |
H13 |
N |
C6 |
C |
|
360.0 |
H13 |
N |
C6 |
H14 |
|
119.9 |
H13 |
N |
C6 |
H15 |
|
239.9 |
N |
C6 |
H14 |
C |
|
240.0 |
H14 |
C6 |
N |
H13 |
|
119.9 |
N |
C6 |
H14 |
H15 |
|
119.9 |
H14 |
C6 |
C |
O |
|
305.0 |
C |
C6 |
H14 |
H15 |
|
239.9 |
N |
C6 |
H15 |
C |
|
120.0 |
H15 |
C6 |
N |
H13 |
|
239.9 |
N |
C6 |
H15 |
H14 |
|
240.1 |
H15 |
C6 |
C |
O |
|
185.0 |
C |
C6 |
H15 |
H14 |
|
120.0 |