Atom Nomenclature for FXQ

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for FXQ

Atom Name (V3) Atom Name (V2)
CAD C1
CAF C2
CAG C3
CAH C4
CAI C5
CAK C6
NAA N1
NAB N2
NAC N3
NAE N4
NAJ N5
NAL N6
HAF H1
HAG H2
HAH H3
HAI H4
HAJ H5
HAK H6
HAM H7
HAL H8
HAR H9
HAS H10
HAO H11
HAC H12
HAE H13
HAN H14
HAP H15
HAQ H16