Atom Nomenclature for FXG

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for FXG

Atom Name (V3) Atom Name (V2)
O18 O18
C16 C16
C15 C15
C14 C14
C13 C13
C12 C12
C11 C11
N10 N10
C6 C6
C1 C1
C2 C2
N9 N9
C8 C8
N7 N7
N3 N3
C4 C4
N5 N5
N17 N17
C19 C19
C20 C20
C21 C21
C22 C22
C23 C23
C24 C24
C25 C25
O27 O27
N26 N26
C28 C28
C29 C29
C30 C30
C31 C31
H15 H15
H15A H15A
H14 H14
H14A H14A
H13 H13
H13A H13A
H12 H12
H12A H12A
H11 H11
H11A H11A
HN10 HN10
H8 H8
H4 H4
HN17 HN17
H20 H20
H21 H21
H22 H22
H24 H24
HN26 HN26
H28 H28
H28A H28A
H29 H29
H29A H29A
H30A H30A
H31B H31B
H31A H31A
HN9 HN9
H30B H30B
H31C H31C