PDB Chemical Component FTD
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for FTD
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C2' |
S3' |
1.759 |
1.840 |
| C2' |
C1' |
1.545 |
1.556 |
| S3' |
C4' |
1.757 |
1.834 |
| O2 |
C2 |
1.235 |
1.216 |
| C2 |
N3 |
1.354 |
1.340 |
| C2 |
N1 |
1.395 |
1.347 |
| C1' |
N1 |
1.466 |
1.465 |
| C1' |
O4' |
1.404 |
1.434 |
| N3 |
C4 |
1.370 |
1.391 |
| N1 |
C6 |
1.404 |
1.472 |
| C4' |
O4' |
1.434 |
1.440 |
| C4' |
C5' |
1.518 |
1.530 |
| C4 |
N4 |
1.368 |
1.394 |
| C4 |
C5 |
1.375 |
1.331 |
| C6 |
C5 |
1.388 |
1.515 |
| C5 |
F5 |
1.315 |
1.351 |
| C5' |
O5' |
1.424 |
1.429 |
| O5' |
PA |
1.592 |
1.610 |
| O1A |
PA |
1.503 |
1.480 |
| O3B |
PB |
1.488 |
1.480 |
| O2A |
PA |
1.600 |
1.610 |
| O2A |
PB |
1.623 |
1.611 |
| PA |
O3A |
1.487 |
1.609 |
| PB |
O1B |
1.501 |
1.610 |
| PB |
O2B |
1.528 |
1.610 |
| N3 |
H1 |
1.000 |
0.970 |
| N4 |
H2 |
1.000 |
0.970 |
| N4 |
H3 |
1.000 |
0.970 |
| C6 |
H4 |
1.100 |
1.090 |
| C6 |
H5 |
1.100 |
1.090 |
| C1' |
H6 |
1.099 |
1.090 |
| C2' |
H7 |
1.099 |
1.090 |
| C2' |
H8 |
1.100 |
1.090 |
| C4' |
H9 |
1.100 |
1.090 |
| C5' |
H10 |
1.100 |
1.090 |
| C5' |
H11 |
1.100 |
1.090 |
| O3A |
H12 |
0.950 |
0.967 |
| O2B |
H13 |
0.950 |
0.967 |
| O1B |
H14 |
0.950 |
0.967 |
Bond Angles for FTD
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2' |
S3' |
C4' |
98.2 |
95.6 |
| S3' |
C2' |
H7 |
111.5 |
111.3 |
| S3' |
C2' |
H8 |
111.5 |
111.2 |
| C2' |
C1' |
H6 |
108.2 |
109.9 |
| S3' |
C4' |
C5' |
108.4 |
110.4 |
| S3' |
C4' |
H9 |
109.3 |
110.4 |
| O2 |
C2 |
N3 |
122.1 |
119.0 |
| O2 |
C2 |
N1 |
118.0 |
119.1 |
| N3 |
C2 |
N1 |
119.6 |
122.0 |
| C2 |
N3 |
C4 |
121.8 |
123.3 |
| C2 |
N3 |
H1 |
119.1 |
118.4 |
| C2 |
N1 |
C6 |
119.2 |
118.5 |
| O4' |
C1' |
H6 |
110.1 |
109.8 |
| N3 |
C4 |
N4 |
121.0 |
119.5 |
| N3 |
C4 |
C5 |
119.0 |
121.1 |
| C4 |
N3 |
H1 |
119.1 |
118.3 |
| N1 |
C6 |
H4 |
107.2 |
108.1 |
| N1 |
C6 |
H5 |
107.2 |
107.7 |
| C4' |
C5' |
O5' |
105.3 |
109.5 |
| C5' |
C4' |
H9 |
112.5 |
110.5 |
| C4' |
C5' |
H10 |
110.5 |
109.5 |
| C4' |
C5' |
H11 |
110.5 |
109.5 |
| N4 |
C4 |
C5 |
120.0 |
119.5 |
| C4 |
N4 |
H2 |
109.5 |
120.0 |
| C4 |
N4 |
H3 |
109.5 |
120.0 |
| C4 |
C5 |
F5 |
120.0 |
121.0 |
| C5' |
O5' |
PA |
121.4 |
123.0 |
| O5' |
C5' |
H10 |
110.5 |
109.5 |
| O5' |
C5' |
H11 |
110.5 |
109.5 |
| O5' |
PA |
O3A |
99.9 |
109.5 |
| O1A |
PA |
O3A |
123.8 |
109.5 |
| O3B |
PB |
O1B |
115.4 |
109.5 |
| O3B |
PB |
O2B |
108.4 |
109.5 |
| O2A |
PB |
O1B |
110.1 |
109.4 |
| O2A |
PB |
O2B |
109.0 |
109.4 |
| PA |
O3A |
H12 |
109.5 |
114.0 |
| O2B |
PB |
O1B |
111.4 |
109.5 |
| PB |
O1B |
H14 |
109.5 |
114.0 |
| PB |
O2B |
H13 |
109.5 |
114.0 |
| H2 |
N4 |
H3 |
109.4 |
120.0 |
| H4 |
C6 |
H5 |
109.5 |
107.7 |
| H7 |
C2' |
H8 |
109.5 |
111.2 |
| H10 |
C5' |
H11 |
109.5 |
109.5 |
Torsion Angles for FTD
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| S3' |
C2' |
C1' |
H6 |
88.1 |
78.7 |
| C2' |
S3' |
C4' |
C5' |
127.8 |
122.2 |
| C2' |
S3' |
C4' |
H9 |
250.8 |
244.7 |
| H7 |
C2' |
S3' |
H8 |
237.3 |
124.6 |
| O4' |
C1' |
C2' |
H6 |
240.3 |
240.5 |
| C4' |
S3' |
C2' |
H7 |
128.7 |
262.9 |
| C4' |
S3' |
C2' |
H8 |
251.3 |
138.3 |
| S3' |
C4' |
C5' |
O5' |
187.5 |
301.4 |
| C5' |
C4' |
S3' |
H9 |
237.0 |
237.5 |
| S3' |
C4' |
C5' |
H10 |
306.8 |
61.4 |
| S3' |
C4' |
C5' |
H11 |
68.1 |
181.4 |
| N3 |
C2 |
O2 |
N1 |
174.9 |
180.3 |
| O2 |
C2 |
N3 |
C4 |
179.6 |
179.9 |
| O2 |
C2 |
N3 |
H1 |
359.6 |
360.0 |
| O2 |
C2 |
N1 |
C6 |
185.1 |
179.8 |
| O2 |
C2 |
N3 |
N1 |
185.2 |
179.7 |
| N3 |
C2 |
N1 |
C6 |
10.1 |
359.5 |
| C2 |
N3 |
C4 |
N4 |
180.6 |
180.0 |
| C2 |
N3 |
C4 |
C5 |
1.0 |
0.1 |
| C4 |
N3 |
C2 |
H1 |
180.0 |
179.9 |
| O2 |
C2 |
N1 |
N3 |
175.0 |
180.3 |
| N1 |
C2 |
N3 |
C4 |
354.4 |
0.2 |
| N1 |
C2 |
N3 |
H1 |
174.4 |
180.2 |
| C2 |
N1 |
C6 |
H4 |
111.2 |
238.4 |
| C2 |
N1 |
C6 |
H5 |
228.7 |
122.2 |
| C1' |
N1 |
C6 |
H4 |
309.0 |
58.2 |
| C1' |
N1 |
C6 |
H5 |
66.5 |
302.0 |
| C2' |
C1' |
O4' |
H6 |
118.6 |
119.6 |
| C4 |
N3 |
C2 |
N1 |
354.4 |
0.2 |
| C2 |
N3 |
C4 |
H1 |
180.0 |
180.1 |
| N4 |
C4 |
N3 |
C5 |
179.5 |
179.9 |
| N3 |
C4 |
N4 |
H2 |
180.0 |
0.1 |
| N3 |
C4 |
N4 |
H3 |
300.0 |
180.0 |
| N3 |
C4 |
C5 |
F5 |
179.4 |
180.0 |
| H4 |
C6 |
N1 |
H5 |
242.5 |
116.1 |
| C4' |
O4' |
C1' |
H6 |
286.9 |
289.7 |
| S3' |
C4' |
C5' |
H9 |
121.1 |
122.5 |
| C4' |
C5' |
O5' |
PA |
167.2 |
180.0 |
| O5' |
C5' |
C4' |
H10 |
240.7 |
240.0 |
| O5' |
C5' |
C4' |
H11 |
119.3 |
120.0 |
| H10 |
C5' |
C4' |
H11 |
238.7 |
240.0 |
| N3 |
C4 |
N4 |
C5 |
180.5 |
180.1 |
| N4 |
C4 |
N3 |
H1 |
0.5 |
359.9 |
| N4 |
C4 |
C5 |
F5 |
359.8 |
0.1 |
| H2 |
N4 |
C4 |
H3 |
240.0 |
180.1 |
| N3 |
C4 |
C5 |
N4 |
179.5 |
179.9 |
| C5 |
C4 |
N3 |
H1 |
181.0 |
180.1 |
| C5 |
C4 |
N4 |
H2 |
359.5 |
180.0 |
| C5 |
C4 |
N4 |
H3 |
119.5 |
359.9 |
| C2 |
N1 |
C6 |
C5 |
350.0 |
0.4 |
| O5' |
C5' |
C4' |
H9 |
66.4 |
179.0 |
| C4' |
C5' |
O5' |
H10 |
119.3 |
120.0 |
| C4' |
C5' |
O5' |
H11 |
240.7 |
240.0 |
| C5' |
O5' |
PA |
O3A |
181.5 |
65.0 |
| H10 |
C5' |
O5' |
H11 |
121.3 |
120.0 |
| PA |
O5' |
C5' |
H10 |
47.9 |
60.1 |
| PA |
O5' |
C5' |
H11 |
286.6 |
300.0 |
| O1A |
PA |
O5' |
O3A |
229.0 |
240.0 |
| O5' |
PA |
O3A |
H12 |
239.2 |
60.0 |
| O5' |
PA |
O1A |
O3A |
116.6 |
120.0 |
| O1A |
PA |
O3A |
H12 |
360.0 |
180.0 |
| O2A |
PB |
O3B |
O1B |
240.6 |
240.0 |
| O2A |
PB |
O3B |
O2B |
115.0 |
120.0 |
| O2B |
PB |
O3B |
O1B |
125.7 |
120.0 |
| O3B |
PB |
O1B |
H14 |
360.0 |
60.0 |
| O3B |
PB |
O2B |
H13 |
360.0 |
180.0 |
| O2A |
PA |
O3A |
H12 |
128.9 |
300.0 |
| O3B |
PB |
O2A |
O1B |
123.0 |
120.0 |
| O3B |
PB |
O2A |
O2B |
245.5 |
240.0 |
| O2B |
PB |
O2A |
O1B |
237.6 |
240.0 |
| O2A |
PB |
O1B |
H14 |
114.8 |
180.0 |
| O2A |
PB |
O2B |
H13 |
249.7 |
60.0 |
| O3B |
PB |
O1B |
O2B |
124.2 |
120.0 |
| O2A |
PB |
O1B |
O2B |
238.9 |
240.1 |
| O1B |
PB |
O2B |
H13 |
128.0 |
300.1 |
| O3B |
PB |
O2B |
O1B |
232.0 |
239.9 |
| O2A |
PB |
O2B |
O1B |
121.7 |
120.0 |
| O2B |
PB |
O1B |
H14 |
235.8 |
300.0 |
| H1 |
N3 |
C2 |
N1 |
174.4 |
180.2 |
| C2 |
N3 |
H1 |
C4 |
180.0 |
179.9 |
| H1 |
N3 |
C4 |
N4 |
0.5 |
359.9 |
| H1 |
N3 |
C4 |
C5 |
181.0 |
180.1 |
| H2 |
N4 |
C4 |
C5 |
359.5 |
180.0 |
| C4 |
N4 |
H2 |
H3 |
120.0 |
179.9 |
| H3 |
N4 |
C4 |
C5 |
119.5 |
359.9 |
| C4 |
N4 |
H3 |
H2 |
240.0 |
180.1 |
| N1 |
C6 |
H4 |
H5 |
116.0 |
243.9 |
| N1 |
C6 |
H5 |
H4 |
244.0 |
116.4 |
| H7 |
C2' |
S3' |
C4' |
128.7 |
262.9 |
| S3' |
C2' |
H7 |
H8 |
123.8 |
235.4 |
| H7 |
C2' |
C1' |
H6 |
329.4 |
196.4 |
| H8 |
C2' |
S3' |
C4' |
251.3 |
138.3 |
| S3' |
C2' |
H8 |
H7 |
236.2 |
124.6 |
| H8 |
C2' |
C1' |
H6 |
206.8 |
321.0 |
| S3' |
C4' |
H9 |
C5' |
239.5 |
237.5 |
| H9 |
C4' |
C5' |
O5' |
66.4 |
179.0 |
| H9 |
C4' |
C5' |
H10 |
185.7 |
299.0 |
| H9 |
C4' |
C5' |
H11 |
307.1 |
59.0 |
| C4' |
C5' |
H10 |
O5' |
243.9 |
240.0 |
| H10 |
C5' |
C4' |
H9 |
185.7 |
299.0 |
| C4' |
C5' |
H10 |
H11 |
121.9 |
120.0 |
| H10 |
C5' |
O5' |
PA |
47.9 |
60.1 |
| O5' |
C5' |
H10 |
H11 |
238.1 |
240.0 |
| C4' |
C5' |
H11 |
O5' |
116.1 |
120.0 |
| H11 |
C5' |
C4' |
H9 |
307.1 |
59.0 |
| C4' |
C5' |
H11 |
H10 |
238.1 |
240.0 |
| H11 |
C5' |
O5' |
PA |
286.6 |
300.0 |
| O5' |
C5' |
H11 |
H10 |
121.9 |
120.0 |
| H13 |
O2B |
PB |
O1B |
128.0 |
300.1 |