Atom Nomenclature for FSS

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for FSS

Atom Name (V3) Atom Name (V2)
N3 N3
C4 C4
C6 C6
C7 C7
C8 C8
C10 C10
C15 C15
C17 C17
C22 C22
C24 C24
C26 C26
N38 N38
C23 C23
C25 C25
O28 O28
C29 C29
N30 N30
C32 C32
C33 C33
C31 C31
C34 C34
C27 C27
N5 N5
N9 N9
C37 C37
O34 O34
N11 N11
C14 C14
CL36 CL36
C16 C16
C18 C18
C19 C19
CL35 CL35
C12 C12
H6 H6
H17 H17
H24 H24
H26 H26
HN38 HN38
H23 H23
H29 H29
H29A H29A
H32 H32
H32A H32A
H33 H33
H33A H33A
H33B H33B
H31 H31
H31A H31A
H34 H34
H34A H34A
H34B H34B
H27 H27
H37 H37
H37A H37A
H37B H37B
H16 H16
H18 H18
H12 H12
H12A H12A