Atom Nomenclature for FSC

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for FSC

Atom Name (V3) Atom Name (V2)
C1 C1
C4 C4
C11 C11
C18 C18
C17 C17
O24 O24
C31 C31
O37 O37
C36 C36
C10 C10
C6 C6
O13 O13
C2 C2
C7 C7
C5 C5
C12 C12
C20 C20
C27 C27
O32 O32
C38 C38
C26 C26
C25 C25
C19 C19
C15 C15
C23 C23
C9 C9
O16 O16
C3 C3
O8 O8
C14 C14
O22 O22
C30 C30
C33 C33
O39 O39
C28 C28
O34 O34
C40 C40
O43 O43
C42 C42
C21 C21
O29 O29
C35 C35
O41 O41
C44 C44
C47 C47
C46 C46
C45 C45
C48 C48
H11 H11
H181 1H18
H182 2H18
H183 3H18
H171 1H17
H172 2H17
H361 1H36
H362 2H36
H363 3H36
H101 1H10
H102 2H10
H6 H6
H13 H13
H7C1 1H7C
H7C2 2H7C
H7C3 3H7C
H5 H5
H20 H20
H271 1H27
H272 2H27
H381 1H38
H382 2H38
H383 3H38
H261 1H26
H262 2H26
H251 1H25
H252 2H25
H19 H19
H15 H15
H231 1H23
H232 2H23
H233 3H23
H9 H9
H16 H16
H3 H3
H14 H14
H30 H30
H33 H33
H39 H39
H28 H28
H421 1H42
H422 2H42
H423 3H42
H21 H21
H29 H29
H351 1H35
H352 2H35
H471 1H47
H472 2H47
H473 3H47
H461 1H46
H462 2H46
H463 3H46
H45 H45
H481 1H48
H482 2H48