Atom Nomenclature for FS9

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for FS9

Atom Name (V3) Atom Name (V2)
N01 N01
C02 C02
N03 N03
C04 C04
N05 N05
C06 C06
C07 C07
C08 C08
C09 C09
O10 O10
N11 N11
C12 C12
C13 C13
C14 C14
C15 C15
F16 F16
F17 F17
F18 F18
C19 C19
C20 C20
C21 C21
C22 C22
C23 C23
C24 C24
N25 N25
C26 C26
N27 N27
C28 C28
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H7 H7
H8 H8
H9 H9
H10 H10
H11 H11
H12 H12
H13 H13
H14 H14
H15 H15
H17 H17
H18 H18