Atom Nomenclature for FRZ

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for FRZ

Atom Name (V3) Atom Name (V2)
C1 C1
C2 C2
N3 N3
C4 C4
C5 C5
C6 C6
N7 N7
C8 C8
C9 C9
C10 C10
C11 C11
C12 C12
C13 C13
C14 C14
C15 C15
C16 C16
C22 C22
C23 C23
C24 C24
N25 N25
N26 N26
C27 C27
N28 N28
N29 N29
N30 N30
H1 H1
H2 H2
H5 H5
H6 H6
H12 H12
H13 H13
H14 H14
H15 H15
H16 H16
H22 H22
H29 H29
H301 1H30
H302 2H30