Atom Nomenclature for FRY

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for FRY

Atom Name (V3) Atom Name (V2)
C1 C1
C7 C7
C6 C6
C5 C5
C4 C4
C3 C3
C10 C10
C12 C12
C16 C16
C14 C14
C15 C15
C18 C18
O19 O19
C20 C20
O22 O22
C21 C21
N23 N23
N17 N17
C24 C24
C25 C25
C26 C26
C27 C27
N11 N11
O13 O13
N8 N8
S2 S2
CL CL
H1 H1
H6 H6
H5 H5
H12 H12
H141 1H14
H142 2H14
H201 1H20
H202 2H20
H231 1H23
H232 2H23
H24 H24
H25 H25
H26 H26
H27 H27
HN11 HN11