Atom Nomenclature for FRV

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for FRV

Atom Name (V3) Atom Name (V2)
C13 C13
N21 N21
C25 C25
C22 C22
C28 C28
C26 C26
C6 C6
C1 C1
C20 C20
C24 C24
C5 C5
C8 C8
C3 C3
N2 N2
C16 C16
C9 C9
C10 C10
C11 C11
O30 O30
S14 S14
O29 O29
N15 N15
C12 C12
N7 N7
N4 N4
N23 N23
C30 C30
H6 H6
H7 H7
H5 H5
H9 H9
H13 H13
H10 H10
H12 H12
H15 H15
H161 H161
H162 H162
H163 H163
H24 H24
H25 H25
H281 H281
H282 H282
H283 H283
H261 H261
H262 H262
H301 H301
H302 H302