Atom Nomenclature for FRJ

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for FRJ

Atom Name (V3) Atom Name (V2)
O36 O36
S33 S33
O35 O35
N34 N34
C37 C37
N38 N38
C39 C39
C40 C40
S41 S41
C30 C30
C31 C31
C32 C32
C29 C29
C28 C28
C27 C27
N16 N16
S15 S15
O17 O17
O18 O18
C2 C2
C1 C1
C3 C3
C6 C6
O7 O7
C5 C5
C4 C4
C9 C9
C8 C8
C13 C13
C14 C14
C10 C10
O12 O12
C11 C11
C19 C19
C20 C20
BR26 BR26
C21 C21
O25 O25
C22 C22
C23 C23
BR24 BR24
H34 H34
H39 H39
H40 H40
H31 H31
H32 H32
H29 H29
H28 H28
H16 H16
H1 H1
H3 H3
H4 H4
H131 1H13
H132 2H13
H141 1H14
H142 2H14
H143 3H14
H19 H19
H25 H25
H23 H23