Atom Nomenclature for FPX

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for FPX

Atom Name (V3) Atom Name (V2)
C1 C1
C2 C2
C3 C3
C4 C4
C5 C5
N6 N6
C7 C7
O8 O8
C9 C9
C10 C10
C11 C11
C12 C12
C13 C13
C14 C14
C15 C15
F16 F16
F17 F17
F18 F18
C19 C19
C20 C20
C21 C21
C22 C22
C23 C23
C24 C24
N25 N25
C26 C26
N27 N27
C28 C28
C29 C29
C30 C30
C31 C31
C32 C32
C33 C33
N34 N34
C35 C35
N36 N36
C37 C37
C38 C38
O39 O39
H1 H1
H1A H1A
H1B H1B
H3 H3
H4 H4
HN6 HN6
H10 H10
H11 H11
H12 H12
H14 H14
H19 H19
H22 H22
H24 H24
HN27 HN27
H29 H29
H30 H30
H31 H31
H32 H32
H33 H33
H37 H37
H37A H37A
H37B H37B