PDB Chemical Component FNU

Ideal Model

Chemical Description

Name 6-amino-5-fluorouridine 5'-(dihydrogen phosphate)
Formula C9 H13 F N3 O9 P
Formal charge 0
Molecular weight 357.186 g/mol
Component type DNA linking
Nonstandard Parent Id U

Chemical features

Atom count 36
Chiral atom count 4
Chiral atoms C1' C2' C3' C4'
Observed leaving atoms O3P HO3' HO3P
Bond count 37
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) 6-amino-5-fluorouridine 5'-(dihydrogen phosphate)
Systematic name (OpenEye OEToolkits) [(2R,3S,4R,5R)-5-(6-azanyl-5-fluoro-2,4-dioxo-pyrimidin-1-yl)-3,4-dihydroxy-oxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) NC1=C(F)C(=O)NC(=O)N1[C@@H]2O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]2O
SMILES (CACTVS) NC1=C(F)C(=O)NC(=O)N1[CH]2O[CH](CO[P](O)(O)=O)[CH](O)[CH]2O
Stereo SMILES (OpenEye) C([C@@H]1[C@H]([C@H]([C@@H](O1)N2C(=C(C(=O)NC2=O)F)N)O)O)OP(=O)(O)O
InChI descriptor InChI=1S/C9H13FN3O9P/c10-3-6(11)13(9(17)12-7(3)16)8-5(15)4(14)2(22-8)1-21-23(18,19)20/h2,4-5,8,14-15H,1,11H2,(H,12,16,17)(H2,18,19,20)/t2-,4-,5-,8-/m1/s1
InChIKey descriptor OLBMCLUPWOAIRA-UMMCILCDSA-N

Status Information

Last modified 2011-06-04
Created 2010-05-24
Release status REL
Model PDB code 3N2M
Processing site RCSB