PDB Chemical Component FN5

Ideal Model

Chemical Description

Name CMP-3F(a)-Neu5Ac
Formula C19 H30 F N4 O14 P
Formal charge 0
Molecular weight 588.432 g/mol
Component type NON-POLYMER

Chemical features

Atom count 69
Chiral atom count 11
Chiral atoms C1' C2' C3' C4' C10 C11 C12 C13 C14 C17 C18
Bond count 71
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) (2S,3R,4R,5R,6R)-5-(acetylamino)-3-fluoro-4-hydroxy-6-[(1R,2R)-1,2,3-trihydroxypropyl]tetrahydro-2H-pyran-2-yl [(2R,3S,4R,5R)-5-(4-amino-2-oxopyrimidin-1(2H)-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl hydrogen (S)-phosphate (non-preferred name)
Systematic name (OpenEye OEToolkits) [(2S,3R,4R,5R,6R)-5-acetamido-3-fluoranyl-4-oxidanyl-6-[(1R,2R)-1,2,3-tris(oxidanyl)propyl]oxan-2-yl] [(2R,3S,4R,5R)-5-(4-azanyl-2-oxidanylidene-pyrimidin-1-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) CC(=O)N[C@@H]1[C@@H](O)[C@@H](F)[C@@H](O[C@H]1[C@H](O)[C@H](O)CO)O[P](O)(=O)OC[C@H]2O[C@H]([C@H](O)[C@@H]2O)N3C=CC(=NC3=O)N
SMILES (CACTVS) CC(=O)N[CH]1[CH](O)[CH](F)[CH](O[CH]1[CH](O)[CH](O)CO)O[P](O)(=O)OC[CH]2O[CH]([CH](O)[CH]2O)N3C=CC(=NC3=O)N
Stereo SMILES (OpenEye) CC(=O)N[C@@H]1[C@H]([C@H]([C@@H](O[C@H]1[C@@H]([C@@H](CO)O)O)O[P@@](=O)(O)OC[C@@H]2[C@H]([C@H]([C@@H](O2)N3C=CC(=NC3=O)N)O)O)F)O
InChI descriptor InChI=1S/C19H30FN4O14P/c1-6(26)22-11-14(30)10(20)18(37-16(11)12(28)7(27)4-25)38-39(33,34)35-5-8-13(29)15(31)17(36-8)24-3-2-9(21)23-19(24)32/h2-3,7-8,10-18,25,27-31H,4-5H2,1H3,(H,22,26)(H,33,34)(H2,21,23,32)/t7-,8-,10-,11-,12-,13-,14+,15-,16-,17-,18+/m1/s1
InChIKey descriptor DLSXHRIQCIXYOE-DOSPZCANSA-N

Status Information

Last modified 2012-08-10
Created 2011-06-15
Release status REL
Model PDB code 3S44
Processing site RCSB