PDB Chemical Component FN5

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for FN5

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
P O1P 1.524 1.610
P O5' 1.609 1.610
N1 C2 1.394 1.345
N1 C1' 1.466 1.465
C2 O2 1.248 1.220
N3 C2 1.357 1.332
C4 N3 1.341 1.328
N4 C4 1.351 1.376
N4 HN4 1.000 0.970
N4 HN4A 1.000 0.969
C5 C4 1.385 1.409
C5 C6 1.393 1.355
C5 H5 1.080 1.080
C6 N1 1.353 1.363
C6 H6 1.080 1.080
C1' C2' 1.513 1.550
C1' H1' 1.100 1.090
O2P P 1.522 1.610
O2P C10 1.430 1.428
C2' C3' 1.509 1.547
C2' O2' 1.435 1.429
C2' H2' 1.100 1.091
O2' HO2' 0.950 0.968
O1P HO1P 0.950 0.967
C3' O3' 1.417 1.429
C3' H3' 1.100 1.090
O3' HO3' 0.950 0.967
O3P P 1.499 1.480
C4' C3' 1.527 1.542
C4' H4' 1.100 1.090
O4' C1' 1.446 1.444
O4' C4' 1.448 1.438
C5' C4' 1.520 1.530
C5' H5' 1.100 1.089
C5' H5'A 1.100 1.090
O5' C5' 1.436 1.428
C10 O9 1.539 1.429
C10 C14 1.540 1.531
O9 C11 1.540 1.430
C11 C12 1.540 1.531
C12 C13 1.540 1.531
C13 C14 1.539 1.532
C14 F1 1.491 1.399
C13 O10 1.430 1.429
C12 N41 1.540 1.465
N41 C15 1.540 1.348
C15 O11 1.220 1.213
C15 C16 1.541 1.507
C11 C17 1.540 1.530
C17 C18 1.540 1.530
C18 C19 1.540 1.530
C19 O12 1.429 1.429
C18 O13 1.430 1.429
C17 O14 1.430 1.429
C10 H14 1.100 1.090
C11 H15 1.100 1.090
C12 H16 1.100 1.091
C13 H17 1.099 1.090
C14 H18 1.100 1.090
O10 H19 0.950 0.966
N41 H20 1.000 0.969
C16 H21 1.100 1.090
C16 H22 1.100 1.090
C16 H23 1.100 1.090
C17 H24 1.100 1.090
C18 H25 1.100 1.090
C19 H26 1.100 1.090
C19 H27 1.100 1.090
O12 H28 0.950 0.968
O13 H29 0.950 0.967
O14 H30 0.950 0.967

Bond Angles for FN5

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O1P P O5' 107.5 109.5
O2P P O1P 114.2 109.4
P O1P HO1P 109.5 114.1
O2P P O5' 109.8 109.5
O3P P O5' 109.6 109.5
P O5' C5' 124.1 123.0
C2 N1 C1' 119.1 119.8
N1 C2 O2 123.1 119.5
C6 N1 C1' 119.6 119.8
N1 C1' C2' 114.0 110.6
N1 C1' H1' 109.0 110.6
HN4 N4 HN4A 120.0 120.0
C6 C5 H5 120.4 120.4
C5 C6 H6 120.9 120.4
C2' C1' H1' 107.9 110.6
C1' C2' C3' 104.3 102.1
C1' C2' O2' 110.5 110.9
C1' C2' H2' 113.9 110.8
O4' C1' H1' 117.5 110.7
O2P C10 O9 72.7 109.5
O2P C10 C14 121.1 109.5
O2P C10 H14 128.7 109.5
O2' C2' C3' 114.1 110.9
C3' C2' H2' 110.2 110.9
C2' C3' O3' 107.5 110.5
C2' C3' H3' 113.3 110.5
O2' C2' H2' 104.1 110.8
C2' O2' HO2' 109.5 114.0
O3' C3' H3' 110.3 110.4
C3' O3' HO3' 109.5 114.0
C4' C3' H3' 112.9 110.6
O4' C4' H4' 111.4 109.9
C5' C4' H4' 107.1 109.9
H5' C5' H5'A 109.7 109.4
O5' C5' H5' 109.3 109.5
O5' C5' H5'A 109.3 109.5
O9 C10 C14 120.0 109.4
C10 O9 C11 120.0 114.1
O9 C10 H14 129.6 109.5
C10 C14 C13 120.0 109.2
C10 C14 F1 109.6 109.5
C14 C10 H14 89.2 109.4
C10 C14 H18 100.0 109.5
O9 C11 C12 120.0 109.4
O9 C11 C17 102.1 109.5
O9 C11 H15 105.0 109.4
C11 C12 C13 120.0 109.2
C11 C12 N41 74.5 109.5
C12 C11 C17 99.1 109.5
C12 C11 H15 107.7 109.5
C11 C12 H16 136.1 109.5
C12 C13 C14 120.0 109.0
C12 C13 O10 97.9 109.6
C13 C12 N41 134.5 109.6
C13 C12 H16 79.2 109.5
C12 C13 H17 109.3 109.5
C13 C14 F1 102.2 109.5
C14 C13 O10 105.1 109.6
C14 C13 H17 102.6 109.5
C13 C14 H18 107.6 109.5
F1 C14 H18 118.5 109.6
O10 C13 H17 123.3 109.6
C13 O10 H19 109.5 114.0
C12 N41 C15 90.0 120.0
N41 C12 H16 122.2 109.6
C12 N41 H20 135.0 120.0
N41 C15 O11 135.0 120.1
N41 C15 C16 90.0 120.0
C15 N41 H20 135.0 120.0
O11 C15 C16 135.0 120.0
C15 C16 H21 109.5 109.5
C15 C16 H22 109.5 109.5
C15 C16 H23 109.5 109.4
C11 C17 C18 90.0 109.5
C11 C17 O14 86.9 109.5
C17 C11 H15 124.3 109.5
C11 C17 H24 124.8 109.5
C17 C18 C19 105.0 109.5
C17 C18 O13 81.4 109.4
C18 C17 O14 81.4 109.4
C18 C17 H24 128.5 109.5
C17 C18 H25 122.1 109.5
C18 C19 O12 90.0 109.5
C19 C18 O13 89.2 109.5
C19 C18 H25 116.8 109.5
C18 C19 H26 116.6 109.5
C18 C19 H27 116.5 109.5
O12 C19 H26 116.6 109.4
O12 C19 H27 116.6 109.5
C19 O12 H28 109.5 114.0
O13 C18 H25 134.0 109.4
C18 O13 H29 109.5 114.0
O14 C17 H24 130.8 109.5
C17 O14 H30 109.5 114.0
H21 C16 H22 109.5 109.4
H21 C16 H23 109.5 109.4
H22 C16 H23 109.4 109.5
H26 C19 H27 101.5 109.5

Torsion Angles for FN5

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O2P P O1P O5' 122.0 120.0
O3P P O1P O5' 242.7 239.9
O1P P O5' C5' 111.7 295.0
O2P P O5' O1P 235.3 240.0
O5' P O1P HO1P 117.3 300.0
P O5' C5' H5' 35.8 60.0
P O5' C5' H5'A 275.8 300.0
C6 N1 C2 C1' 186.4 180.2
C2 N1 C1' C2' 122.1 295.0
C2 N1 C1' H1' 1.4 172.1
C1' N1 C2 O2 355.4 0.0
C2' C1' N1 H1' 120.6 122.9
N1 C1' C2' C3' 145.0 155.5
N1 C1' C2' O2' 268.1 273.7
N1 C1' C2' H2' 24.8 37.3
O4' C1' N1 H1' 234.0 237.0
O2 C2 N1 C1' 355.4 0.0
N3 C2 N1 C1' 176.1 180.0
C5 C6 N1 C1' 183.4 179.7
H5 C5 C6 H6 2.6 359.8
C2 N1 C6 C1' 173.5 179.8
C6 N1 C1' C2' 295.7 114.8
C6 N1 C1' H1' 175.1 351.9
H6 C6 N1 C1' 3.4 0.2
H6 C6 C5 H5 2.6 359.8
N1 C1' C2' H1' 238.8 237.1
O4' C1' C2' H1' 126.1 118.6
O2' C2' C1' C3' 123.0 118.2
C3' C2' C1' H2' 120.3 118.2
C1' C2' C3' O3' 90.4 97.8
C1' C2' C3' H3' 212.4 220.3
O2' C2' C1' H2' 243.3 236.5
C1' C2' O2' HO2' 180.0 180.0
N1 C1' H1' C2' 124.3 122.9
H1' C1' C2' C3' 266.3 278.4
H1' C1' C2' O2' 29.3 36.6
H1' C1' C2' H2' 146.0 160.2
O1P P O2P O5' 239.2 240.0
O2P P O1P HO1P 239.3 60.0
O3P P O2P O5' 120.3 120.0
O2P P O5' C5' 347.0 175.0
C10 O2P P O1P 118.9 65.0
C10 O2P P O5' 239.7 185.0
O9 C10 O2P C14 115.1 120.0
O2P C10 O9 C11 243.6 301.1
O9 C10 O2P H14 232.7 240.0
O2P C10 C14 C13 87.0 62.4
O2P C10 C14 F1 204.6 182.3
C14 C10 O2P H14 117.6 120.0
O2P C10 C14 H18 329.8 302.5
C3' C2' C1' H1' 266.3 278.4
C1' C2' C3' O2' 120.6 118.2
C1' C2' C3' H2' 237.3 241.8
O2' C2' C3' H2' 116.7 123.7
C3' C2' O2' HO2' 297.1 292.7
O3' C3' C2' H3' 237.9 237.5
C2' C3' O3' HO3' 180.0 61.5
C4' C3' C2' H3' 123.4 118.8
O2' C2' C1' H1' 29.3 36.6
C1' C2' O2' C3' 242.8 247.3
C1' C2' O2' H2' 122.6 123.5
C3' C2' O2' H2' 239.8 236.3
O2' C2' C3' O3' 329.7 339.6
O2' C2' C3' H3' 91.8 102.1
H2' C2' C1' H1' 146.0 160.2
C1' C2' H2' C3' 116.9 112.7
C1' C2' H2' O2' 239.6 236.4
O2' C2' H2' C3' 237.2 236.3
H2' C2' C3' O3' 213.0 215.9
H2' C2' C3' H3' 335.1 338.5
H2' C2' O2' HO2' 57.3 56.4
HO2' O2' C2' C3' 297.1 292.7
HO2' O2' C2' H2' 57.3 56.4
HO1P O1P P O5' 117.3 300.0
O3' C3' C2' H2' 213.0 215.9
C2' C3' O3' H3' 123.9 122.6
C4' C3' O3' H3' 236.3 237.4
H3' C3' C2' H2' 335.1 338.5
C2' C3' H3' O3' 239.5 237.4
H3' C3' O3' HO3' 56.1 298.9
HO3' O3' C3' H3' 56.1 298.9
O1P P O3P O5' 115.9 120.0
O3P P O1P HO1P 0.0 180.0
O2P P O3P O5' 239.6 240.0
O3P P O5' C5' 226.8 55.0
C4' C3' C2' H2' 98.5 97.3
C2' C3' C4' H3' 236.3 241.2
O3' C3' C4' H3' 122.1 122.6
C4' C3' O3' HO3' 292.3 176.3
H4' C4' C3' H3' 252.5 236.2
N1 C1' O4' H1' 120.3 123.0
C2' C1' O4' H1' 240.1 241.5
O4' C1' C2' H2' 272.1 278.8
C4' O4' C1' H1' 91.6 78.5
O4' C4' C3' H3' 131.4 116.8
C5' C4' O4' H4' 241.5 238.9
P O5' C5' C4' 155.8 180.0
C5' C4' C3' H3' 11.0 357.2
O4' C4' C5' H4' 121.1 121.1
H5' C5' C4' H4' 285.2 66.0
O5' C5' H5' H5'A 240.2 240.0
H5'A C5' C4' H4' 45.2 186.0
O5' C5' H5'A H5' 119.8 120.0
O5' C5' C4' H4' 165.2 306.0
H5' C5' O5' H5'A 120.0 120.0
O2P C10 O9 C14 243.6 240.0
O2P C10 O9 H14 126.3 120.1
O9 C10 C14 C13 360.0 302.3
O9 C10 C14 F1 117.6 62.3
C14 C10 O9 H14 242.7 240.1
O9 C10 C14 H18 242.8 182.4
C10 O9 C11 C12 -0.0 298.9
C10 O9 C11 C17 252.0 178.9
C10 O9 C11 H15 121.2 58.8
O2P C10 C14 O9 87.0 120.0
O2P C10 C14 H14 223.8 240.0
C14 C10 O9 C11 -0.0 61.2
O9 C10 C14 H14 136.8 119.9
C12 C13 C14 C10 -0.0 57.0
C13 C14 C10 F1 242.4 240.1
C10 C14 C13 O10 108.6 176.9
C10 C14 C13 H17 238.6 297.1
C13 C14 C10 H18 117.2 119.9
F1 C14 C10 H18 234.8 239.8
C11 O9 C10 C14 -0.0 61.2
C11 O9 C10 H14 117.3 181.1
O9 C11 C12 C13 -0.0 57.6
O9 C11 C12 N41 132.8 177.5
C12 C11 O9 C17 108.0 120.0
C12 C11 O9 H15 238.8 240.0
O9 C11 C12 H16 253.3 297.7
O9 C11 C17 C18 241.1 305.0
O9 C11 C17 O14 322.4 65.0
C17 C11 O9 H15 130.8 120.0
O9 C11 C17 H24 101.7 185.0
O9 C11 C12 C17 250.3 240.0
O9 C11 C12 H15 119.8 119.9
C11 C12 C13 C14 -0.0 303.1
C11 C12 C13 O10 247.5 183.2
C13 C12 C11 N41 227.2 240.0
C13 C12 C11 H16 106.7 119.9
C11 C12 C13 H17 118.0 62.9
C11 C12 N41 C15 107.8 155.0
N41 C12 C11 H16 239.5 239.9
C11 C12 N41 H20 287.8 334.9
C12 C11 C17 C18 117.6 185.1
C12 C11 C17 O14 198.9 305.0
C17 C11 C12 H15 229.5 239.9
C12 C11 C17 H24 338.2 65.1
C10 C14 C13 C12 -0.0 57.0
C11 C12 C13 N41 97.7 119.9
C13 C12 C11 C17 109.7 177.6
C13 C12 C11 H15 240.2 297.7
C11 C12 C13 H16 222.5 240.1
C12 C13 C14 F1 238.7 297.0
C14 C13 C12 O10 112.5 119.9
C14 C13 C12 H17 242.0 240.2
C12 C13 C14 H18 113.2 176.9
O10 C13 C12 H17 129.5 120.3
C12 C13 O10 H19 180.0 180.0
C13 C12 N41 C15 224.8 274.8
N41 C12 C13 H16 124.9 120.2
C13 C12 N41 H20 44.8 94.7
C10 C14 C13 F1 121.3 119.9
C13 C14 C10 H14 223.2 182.4
C10 C14 C13 H18 246.8 240.1
C12 C13 C14 O10 251.4 240.1
C14 C13 C12 N41 262.3 183.1
C14 C13 C12 H16 137.5 62.9
C12 C13 C14 H17 121.4 119.8
F1 C14 C13 H18 125.5 120.2
O10 C13 C14 H17 230.0 239.7
C14 C13 O10 H19 56.0 60.4
C10 C14 F1 C13 231.7 240.3
F1 C14 C10 H14 340.8 302.3
C10 C14 F1 H18 113.7 120.1
F1 C14 C13 O10 347.3 56.9
F1 C14 C13 H17 117.3 177.2
C13 C14 F1 H18 242.0 239.9
C12 C13 O10 C14 124.0 119.6
O10 C13 C12 N41 149.8 63.2
O10 C13 C12 H16 25.0 303.0
C12 C13 O10 H17 240.6 239.8
O10 C13 C14 F1 347.3 56.9
C14 C13 O10 H17 116.6 120.2
O10 C13 C14 H18 221.8 296.8
C11 C12 N41 C13 243.0 240.3
N41 C12 C11 C17 242.5 297.5
N41 C12 C11 H15 12.9 57.6
C11 C12 N41 H16 135.2 120.1
N41 C12 C13 C14 262.3 183.1
N41 C12 C13 O10 149.8 63.2
C13 C12 N41 H16 252.2 239.8
N41 C12 C13 H17 20.4 303.0
C12 N41 C15 O11 0.0 359.9
C12 N41 C15 C16 180.0 179.9
C15 N41 C12 H20 180.0 180.1
C15 N41 C12 H16 332.6 35.0
C12 N41 C15 H20 180.0 179.9
O11 C15 N41 C16 180.1 180.0
N41 C15 C16 H21 180.1 60.0
N41 C15 C16 H22 300.1 179.9
N41 C15 C16 H23 60.1 300.0
N41 C15 O11 C16 179.9 180.0
O11 C15 N41 H20 180.0 180.0
O11 C15 C16 H21 360.0 240.0
O11 C15 C16 H22 120.0 360.0
O11 C15 C16 H23 240.0 120.0
N41 C15 C16 O11 180.1 180.0
C16 C15 N41 H20 360.0 0.0
H21 C16 C15 H22 240.0 240.0
H21 C16 C15 H23 120.0 120.0
H22 C16 C15 H23 240.0 239.9
O9 C11 C17 C12 123.5 120.0
O9 C11 C17 H15 242.3 240.0
C17 C11 C12 C13 109.7 177.6
C17 C11 C12 N41 242.5 297.5
C12 C11 C17 H15 118.8 120.1
C17 C11 C12 H16 3.0 57.7
C11 C17 C18 C19 180.0 180.0
C11 C17 C18 O13 266.8 300.0
C18 C17 C11 O14 278.6 240.0
C18 C17 C11 H24 139.3 120.0
C11 C17 C18 H25 44.0 60.0
O14 C17 C11 H24 220.7 240.0
C11 C17 O14 H30 180.0 300.0
C11 C17 C18 O14 86.8 120.0
C18 C17 C11 H15 358.8 65.0
C11 C17 C18 H24 223.1 240.0
C17 C18 C19 O12 180.0 185.0
C19 C18 C17 O13 273.2 240.0
C19 C18 C17 H25 136.0 120.1
C17 C18 C19 H26 300.0 304.9
C17 C18 C19 H27 60.0 65.0
O13 C18 C17 H25 222.8 240.0
C17 C18 O13 H29 36.2 299.9
O14 C17 C18 H24 136.3 120.0
C18 C17 O14 H30 270.5 60.0
C17 C18 C19 O13 80.9 119.9
C19 C18 C17 O14 93.2 60.0
C19 C18 C17 H24 316.8 300.1
C17 C18 C19 H25 221.3 239.9
O12 C19 C18 H26 240.0 240.1
O12 C19 C18 H27 120.0 120.0
C18 C19 O12 H28 180.0 180.0
O13 C18 C19 H25 140.4 120.0
C19 C18 O13 H29 141.5 59.9
H26 C19 C18 H27 240.0 240.0
O12 C19 C18 O13 99.1 65.1
O12 C19 C18 H25 318.7 305.1
C18 C19 O12 H26 120.0 120.0
C18 C19 O12 H27 240.0 239.9
H26 C19 O12 H27 120.0 120.0
C17 C18 O13 C19 254.7 240.0
O13 C18 C17 O14 180.0 180.0
O13 C18 C17 H24 43.7 60.0
C17 C18 O13 H25 126.9 120.0
O13 C18 C19 O12 99.1 65.1
C19 C18 O13 H25 232.2 240.0
O13 C18 C19 H26 219.1 185.0
O13 C18 C19 H27 339.1 305.0
C11 C17 O14 C18 269.5 240.0
O14 C17 C11 H15 80.2 185.0
C11 C17 O14 H24 135.0 120.0
O14 C17 C18 C19 93.2 60.0
O14 C17 C18 O13 180.0 180.0
C18 C17 O14 H24 225.5 240.0
O14 C17 C18 H25 317.2 300.0
O2P C10 H14 O9 260.3 239.9
O2P C10 H14 C14 130.6 120.0
O9 C10 H14 C14 230.3 240.1
H14 C10 O9 C11 117.3 181.1
H14 C10 C14 C13 223.2 182.4
H14 C10 C14 F1 340.8 302.3
H14 C10 C14 H18 106.0 62.5
O9 C11 H15 C12 231.0 240.1
O9 C11 H15 C17 116.4 120.0
H15 C11 C12 C13 240.2 297.7
H15 C11 C12 N41 12.9 57.6
C12 C11 H15 C17 245.3 239.9
H15 C11 C12 H16 133.5 177.7
H15 C11 C17 C18 358.8 65.0
H15 C11 C17 O14 80.2 185.0
H15 C11 C17 H24 219.5 305.0
C11 C12 H16 C13 122.4 119.7
C11 C12 H16 N41 258.6 239.9
H16 C12 C11 C17 3.0 57.7
H16 C12 C11 H15 133.5 177.7
H16 C12 C13 C14 137.5 62.9
H16 C12 C13 O10 25.0 303.0
C13 C12 H16 N41 136.3 120.2
H16 C12 C13 H17 255.5 182.8
H16 C12 N41 C15 332.6 35.0
H16 C12 N41 H20 152.6 214.9
C12 C13 H17 C14 231.6 240.5
C12 C13 H17 O10 113.8 120.2
H17 C13 C12 N41 20.4 303.0
H17 C13 C12 H16 255.5 182.8
H17 C13 C14 F1 117.3 177.2
C14 C13 H17 O10 242.2 239.8
H17 C13 C14 H18 351.8 57.0
H17 C13 O10 H19 299.4 300.2
C10 C14 H18 C13 126.1 119.7
C10 C14 H18 F1 241.2 239.8
H18 C14 C10 H14 106.0 62.5
C13 C14 H18 F1 115.1 120.1
H18 C14 C13 O10 221.8 296.8
H18 C14 C13 H17 351.8 57.0
H19 O10 C13 H17 299.4 300.2
C12 N41 H20 C15 180.0 180.1
H20 N41 C12 H16 152.6 214.9
H20 N41 C15 O11 180.0 180.0
H20 N41 C15 C16 360.0 0.0
C15 C16 H21 H22 120.0 120.0
C15 C16 H21 H23 240.0 240.0
H22 C16 H21 H23 120.0 120.0
C15 C16 H22 H21 240.0 240.0
C15 C16 H22 H23 120.0 120.0
H21 C16 H22 H23 240.0 240.0
C15 C16 H23 H21 120.0 120.0
C15 C16 H23 H22 240.0 239.9
H21 C16 H23 H22 120.0 120.0
C11 C17 H24 C18 123.6 120.0
C11 C17 H24 O14 239.2 240.0
H24 C17 C11 H15 219.5 305.0
H24 C17 C18 C19 316.8 300.1
H24 C17 C18 O13 43.7 60.0
C18 C17 H24 O14 115.6 120.0
H24 C17 C18 H25 180.9 180.0
H24 C17 O14 H30 44.9 180.0
C17 C18 H25 C19 131.2 120.0
C17 C18 H25 O13 248.9 240.0
H25 C18 C17 O14 317.2 300.0
H25 C18 C17 H24 180.9 180.0
H25 C18 C19 O12 318.7 305.1
C19 C18 H25 O13 117.7 120.0
H25 C18 C19 H26 78.7 65.0
H25 C18 C19 H27 198.7 185.1
H25 C18 O13 H29 269.3 179.9
C18 C19 H26 O12 255.5 240.0
H26 C19 C18 O13 219.1 185.0
H26 C19 C18 H25 78.7 65.0
C18 C19 H26 H27 127.7 120.1
O12 C19 H26 H27 232.2 240.1
H26 C19 O12 H28 60.0 60.0
C18 C19 H27 O12 104.5 120.0
H27 C19 C18 O13 339.1 305.0
H27 C19 C18 H25 198.7 185.1
C18 C19 H27 H26 232.2 239.9
O12 C19 H27 H26 127.8 119.9
H27 C19 O12 H28 300.0 300.0
H28 O12 C19 H26 60.0 60.0
H28 O12 C19 H27 300.0 300.0
H29 O13 C18 H25 269.3 179.9
H30 O14 C17 H24 44.9 180.0