Atom Nomenclature for FMY

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for FMY

Atom Name (V3) Atom Name (V2)
C01 C01
C02 C02
C03 C03
C04 C04
C05 C05
C06 C06
C07 C07
C08 C08
C09 C09
C10 C10
C11 C11
C12 C12
C13 C13
C14 C14
C15 C15
C16 C16
N17 N17
N18 N18
N19 N19
O20 O20
O21 O21
C22 C22
C23 C23
C24 C24
C25 C25
C26 C26
C27 C27
N28 N28
N29 N29
N30 N30
C31 C31
N31 N31
N32 N32
C33 C33
C34 C34
C35 C35
F37 F37
H01 H01
H02 H02
H03 H03
H04 H04
H05 H05
H06 H06
H07 H07
H08 H08
H09 H09
H09A H09A
H10 H10
H10A H10A
H11 H11
H11A H11A
H12 H12
H12A H12A
H13 H13
H13A H13A
H14 H14
H14A H14A
H15 H15
H15A H15A
H16 H16
H16A H16A
HN31 HN31
H34 H34
H35 H35