PDB Chemical Component FMO
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for FMO
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O6 |
C6 |
1.404 |
1.429 |
| O4 |
C4 |
1.442 |
1.429 |
| C4 |
C5 |
1.500 |
1.531 |
| C4 |
C3 |
1.499 |
1.532 |
| C6 |
C5 |
1.487 |
1.530 |
| O3 |
C3 |
1.460 |
1.429 |
| C5 |
O5 |
1.466 |
1.429 |
| C3 |
C2 |
1.464 |
1.531 |
| O5 |
C1 |
1.497 |
1.428 |
| C2 |
C1 |
1.515 |
1.531 |
| C2 |
O2 |
1.468 |
1.429 |
| C1 |
O1 |
1.413 |
1.429 |
| O1 |
C4' |
1.447 |
1.429 |
| O3' |
C3' |
1.482 |
1.430 |
| C4' |
C3' |
1.483 |
1.532 |
| C4' |
C5' |
1.541 |
1.531 |
| O6' |
C6' |
1.466 |
1.429 |
| C6' |
C5' |
1.536 |
1.530 |
| C3' |
C2' |
1.486 |
1.532 |
| C5' |
O5' |
1.449 |
1.429 |
| F2 |
C2' |
1.351 |
1.399 |
| C2' |
F3 |
1.364 |
1.399 |
| C2' |
C1' |
1.526 |
1.530 |
| O5' |
C1' |
1.490 |
1.429 |
| C1' |
F1 |
1.324 |
1.400 |
| C1 |
H1 |
1.100 |
1.090 |
| C2 |
H2 |
1.100 |
1.090 |
| C3 |
H3 |
1.100 |
1.090 |
| C4 |
H4 |
1.100 |
1.090 |
| C5 |
H5 |
1.100 |
1.090 |
| C6 |
H6 |
1.100 |
1.090 |
| C6 |
H7 |
1.100 |
1.089 |
| C1' |
H8 |
1.100 |
1.090 |
| O2 |
H9 |
0.950 |
0.967 |
| O3 |
H10 |
0.950 |
0.967 |
| O4 |
H11 |
0.950 |
0.967 |
| O6 |
H12 |
0.950 |
0.966 |
| C3' |
H13 |
1.100 |
1.090 |
| C4' |
H14 |
1.100 |
1.090 |
| C5' |
H15 |
1.100 |
1.090 |
| C6' |
H16 |
1.100 |
1.090 |
| C6' |
H17 |
1.099 |
1.090 |
| O3' |
H18 |
0.950 |
0.966 |
| O6' |
H19 |
0.950 |
0.967 |
Bond Angles for FMO
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O6 |
C6 |
H6 |
109.8 |
109.4 |
| O6 |
C6 |
H7 |
109.8 |
109.5 |
| O4 |
C4 |
H4 |
109.9 |
109.6 |
| C4 |
C5 |
O5 |
110.4 |
109.4 |
| C5 |
C4 |
H4 |
109.1 |
109.5 |
| C4 |
C5 |
H5 |
108.1 |
109.5 |
| C4 |
C3 |
H3 |
108.2 |
109.5 |
| C6 |
C5 |
O5 |
109.4 |
109.5 |
| C6 |
C5 |
H5 |
108.3 |
109.6 |
| O3 |
C3 |
H3 |
108.7 |
109.5 |
| O5 |
C5 |
H5 |
108.6 |
109.5 |
| C3 |
C2 |
O2 |
109.0 |
109.5 |
| C3 |
C2 |
H2 |
108.4 |
109.6 |
| O5 |
C1 |
H1 |
108.4 |
109.5 |
| C2 |
C1 |
H1 |
108.2 |
109.5 |
| O2 |
C2 |
H2 |
108.4 |
109.5 |
| C2 |
O2 |
H9 |
109.5 |
114.0 |
| O1 |
C4' |
C3' |
111.2 |
109.5 |
| O1 |
C4' |
C5' |
104.8 |
109.5 |
| O1 |
C4' |
H14 |
110.5 |
109.6 |
| O3' |
C3' |
H13 |
108.3 |
109.6 |
| C4' |
C3' |
H13 |
108.3 |
109.6 |
| C4' |
C5' |
O5' |
113.4 |
109.5 |
| C5' |
C4' |
H14 |
109.2 |
109.6 |
| C4' |
C5' |
H15 |
107.7 |
109.5 |
| O6' |
C6' |
H16 |
109.7 |
109.4 |
| O6' |
C6' |
H17 |
109.7 |
109.5 |
| C6' |
C5' |
O5' |
109.8 |
109.4 |
| C6' |
C5' |
H15 |
107.8 |
109.5 |
| O5' |
C5' |
H15 |
108.9 |
109.5 |
| F2 |
C2' |
F3 |
105.3 |
109.5 |
| C2' |
C1' |
F1 |
111.6 |
109.5 |
| C2' |
C1' |
H8 |
106.4 |
109.5 |
| O5' |
C1' |
H8 |
106.8 |
109.5 |
| F1 |
C1' |
H8 |
108.9 |
109.4 |
| H6 |
C6 |
H7 |
109.5 |
109.5 |
| H16 |
C6' |
H17 |
109.5 |
109.5 |
Torsion Angles for FMO
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O6 |
C6 |
C5 |
H5 |
201.1 |
305.1 |
| H6 |
C6 |
O6 |
H7 |
239.6 |
120.0 |
| O4 |
C4 |
C5 |
O5 |
176.8 |
182.5 |
| C5 |
C4 |
O4 |
H4 |
238.3 |
239.8 |
| O4 |
C4 |
C5 |
H5 |
295.4 |
302.5 |
| O4 |
C4 |
C3 |
H3 |
62.1 |
57.0 |
| O4 |
C4 |
C5 |
H4 |
122.1 |
120.2 |
| C5 |
C4 |
C3 |
H3 |
300.2 |
297.1 |
| C6 |
C5 |
C4 |
O5 |
237.8 |
240.0 |
| C6 |
C5 |
C4 |
H5 |
119.2 |
120.1 |
| O5 |
C5 |
C4 |
H5 |
241.4 |
240.1 |
| O3 |
C3 |
C4 |
H3 |
241.9 |
239.8 |
| C4 |
C3 |
C2 |
O2 |
183.6 |
183.1 |
| C4 |
C3 |
C2 |
H2 |
65.8 |
62.9 |
| C4 |
C5 |
C6 |
O5 |
122.7 |
119.9 |
| C6 |
C5 |
C4 |
H4 |
292.5 |
302.4 |
| C4 |
C5 |
C6 |
H5 |
240.9 |
239.9 |
| O5 |
C5 |
C6 |
H5 |
118.2 |
120.0 |
| C4 |
C3 |
O3 |
H3 |
117.7 |
120.2 |
| O3 |
C3 |
C2 |
H2 |
304.4 |
303.0 |
| O5 |
C5 |
C4 |
H4 |
54.7 |
62.3 |
| C4 |
C5 |
O5 |
H5 |
118.4 |
119.9 |
| C6 |
C5 |
O5 |
H5 |
242.0 |
239.9 |
| C5 |
O5 |
C1 |
H1 |
189.6 |
178.9 |
| C3 |
C2 |
C1 |
H1 |
167.3 |
177.6 |
| O2 |
C2 |
C3 |
H2 |
117.8 |
120.2 |
| C3 |
C2 |
O2 |
H9 |
180.0 |
179.7 |
| C2 |
C1 |
O5 |
H1 |
119.0 |
120.0 |
| O5 |
C1 |
C2 |
H1 |
240.8 |
240.0 |
| C3 |
C2 |
O2 |
H2 |
242.2 |
239.8 |
| O2 |
C2 |
C1 |
H1 |
289.5 |
297.5 |
| C1 |
O1 |
C4' |
H14 |
332.1 |
325.1 |
| O1 |
C4' |
C3' |
H13 |
46.5 |
57.0 |
| O1 |
C4' |
C5' |
O5' |
191.7 |
182.4 |
| C5' |
C4' |
O1 |
H14 |
242.4 |
239.8 |
| O1 |
C4' |
C5' |
H15 |
312.3 |
302.5 |
| C4' |
C3' |
O3' |
H13 |
117.5 |
120.2 |
| O1 |
C4' |
C3' |
C5' |
116.3 |
119.9 |
| O1 |
C4' |
C3' |
H14 |
237.2 |
239.8 |
| O3' |
C3' |
C4' |
H13 |
242.5 |
239.8 |
| O1 |
C4' |
C5' |
C3' |
239.9 |
240.1 |
| O1 |
C4' |
C5' |
H14 |
118.4 |
120.2 |
| C5' |
C4' |
C3' |
H13 |
290.3 |
297.1 |
| C6' |
C5' |
C4' |
O5' |
237.3 |
240.1 |
| C6' |
C5' |
C4' |
H15 |
116.7 |
120.0 |
| O5' |
C5' |
C4' |
H15 |
239.4 |
239.9 |
| O6' |
C6' |
C5' |
H15 |
195.9 |
304.1 |
| H16 |
C6' |
O6' |
H17 |
239.7 |
120.0 |
| C4' |
C5' |
C6' |
O5' |
124.9 |
120.0 |
| C6' |
C5' |
C4' |
H14 |
310.6 |
302.3 |
| C4' |
C5' |
C6' |
H15 |
243.3 |
240.0 |
| O5' |
C5' |
C6' |
H15 |
118.5 |
120.0 |
| C3' |
C2' |
C1' |
H8 |
168.9 |
177.6 |
| O5' |
C5' |
C4' |
H14 |
73.3 |
62.3 |
| C4' |
C5' |
O5' |
H15 |
119.9 |
120.1 |
| C6' |
C5' |
O5' |
H15 |
242.2 |
240.0 |
| C5' |
O5' |
C1' |
H8 |
192.0 |
178.8 |
| F2 |
C2' |
C1' |
H8 |
47.2 |
57.7 |
| F3 |
C2' |
C1' |
F1 |
52.5 |
57.5 |
| F3 |
C2' |
C1' |
H8 |
293.8 |
297.5 |
| O5' |
C1' |
C2' |
H8 |
244.9 |
240.0 |
| F1 |
C1' |
C2' |
H8 |
118.7 |
120.0 |
| C2' |
C1' |
O5' |
H8 |
114.9 |
120.0 |
| F1 |
C1' |
O5' |
H8 |
240.2 |
240.0 |
| C2' |
C1' |
F1 |
H8 |
242.9 |
240.0 |
| O5' |
C1' |
F1 |
H8 |
118.5 |
120.0 |
| C3 |
C2 |
H2 |
O2 |
118.2 |
120.2 |
| H2 |
C2 |
C1 |
H1 |
47.7 |
57.7 |
| H2 |
C2 |
O2 |
H9 |
297.9 |
299.9 |
| H3 |
C3 |
C2 |
O2 |
303.1 |
303.0 |
| H3 |
C3 |
C2 |
H2 |
185.2 |
182.8 |
| H4 |
C4 |
C5 |
O5 |
54.7 |
62.3 |
| H4 |
C4 |
C5 |
H5 |
173.3 |
182.2 |
| H4 |
C4 |
C3 |
H3 |
182.2 |
177.2 |
| C4 |
C5 |
H5 |
O5 |
240.2 |
240.1 |
| H5 |
C5 |
C4 |
H4 |
173.3 |
182.2 |
| C6 |
C5 |
H5 |
O5 |
118.7 |
120.1 |
| O6 |
C6 |
H6 |
H7 |
120.6 |
240.0 |
| H6 |
C6 |
C5 |
O5 |
199.4 |
185.0 |
| H6 |
C6 |
C5 |
H5 |
81.2 |
65.0 |
| O6 |
C6 |
H7 |
H6 |
239.5 |
120.0 |
| H7 |
C6 |
C5 |
O5 |
79.1 |
305.1 |
| H7 |
C6 |
C5 |
H5 |
320.9 |
185.0 |
| C2' |
C1' |
H8 |
F1 |
120.4 |
120.0 |
| H9 |
O2 |
C2 |
H2 |
297.9 |
299.9 |
| H10 |
O3 |
C3 |
H3 |
62.3 |
60.2 |
| H11 |
O4 |
C4 |
H4 |
301.7 |
300.2 |
| H12 |
O6 |
C6 |
H6 |
299.8 |
60.1 |
| H12 |
O6 |
C6 |
H7 |
60.2 |
300.1 |
| O1 |
C4' |
H14 |
C3' |
123.2 |
120.2 |
| O1 |
C4' |
H14 |
C5' |
245.2 |
239.8 |
| H14 |
C4' |
C3' |
H13 |
169.3 |
177.2 |
| H14 |
C4' |
C5' |
O5' |
73.3 |
62.3 |
| H14 |
C4' |
C5' |
H15 |
193.9 |
182.3 |
| C4' |
C5' |
H15 |
O5' |
236.6 |
239.9 |
| H15 |
C5' |
C4' |
H14 |
193.9 |
182.3 |
| C6' |
C5' |
H15 |
O5' |
119.0 |
120.0 |
| O6' |
C6' |
H16 |
H17 |
120.5 |
240.0 |
| H16 |
C6' |
C5' |
O5' |
194.5 |
184.1 |
| H16 |
C6' |
C5' |
H15 |
76.1 |
64.1 |
| O6' |
C6' |
H17 |
H16 |
239.5 |
119.9 |
| H17 |
C6' |
C5' |
O5' |
74.2 |
304.1 |
| H17 |
C6' |
C5' |
H15 |
315.8 |
184.1 |
| H18 |
O3' |
C3' |
H13 |
62.5 |
60.2 |
| H19 |
O6' |
C6' |
H16 |
299.9 |
60.0 |
| H19 |
O6' |
C6' |
H17 |
60.2 |
300.1 |