PDB Chemical Component FMN

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for FMN

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N1 C2 1.336 1.331
N1 C10 1.312 1.322
C2 O2 1.206 1.219
C2 N3 1.437 1.340
N3 C4 1.346 1.354
N3 HN3 1.000 0.970
C4 O4 1.239 1.216
C4 C4A 1.465 1.479
C4A N5 1.321 1.308
C4A C10 1.473 1.473
N5 C5A 1.338 1.340
C5A C6 1.457 1.408
C5A C9A 1.457 1.413
C6 C7 1.362 1.362
C6 H6 1.080 1.080
C7 C7M 1.538 1.506
C7 C8 1.439 1.391
C7M HM71 1.100 1.091
C7M HM72 1.100 1.090
C7M HM73 1.100 1.091
C8 C8M 1.521 1.507
C8 C9 1.363 1.377
C8M HM81 1.100 1.090
C8M HM82 1.100 1.091
C8M HM83 1.100 1.090
C9 C9A 1.385 1.392
C9 H9 1.080 1.080
C9A N10 1.402 1.379
N10 C10 1.364 1.362
N10 C1' 1.486 1.465
C1' C2' 1.542 1.530
C1' H1'1 1.099 1.091
C1' H1'2 1.100 1.089
C2' O2' 1.445 1.429
C2' C3' 1.539 1.530
C2' H2' 1.100 1.091
O2' HO2' 0.951 0.967
C3' O3' 1.478 1.429
C3' C4' 1.514 1.530
C3' H3' 1.100 1.090
O3' HO3' 0.950 0.967
C4' O4' 1.451 1.429
C4' C5' 1.519 1.530
C4' H4' 1.100 1.090
O4' HO4' 0.950 0.967
C5' O5' 1.452 1.429
C5' H5'1 1.100 1.090
C5' H5'2 1.100 1.090
O5' P 1.604 1.610
P O1P 1.508 1.480
P O2P 1.532 1.610
P O3P 1.527 1.610
O2P HOP2 0.950 0.967
O3P HOP3 0.950 0.966

Bond Angles for FMN

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C2 N1 C10 121.6 121.5
N1 C2 O2 122.5 118.0
N1 C2 N3 120.6 124.1
N1 C10 C4A 121.2 118.7
N1 C10 N10 121.5 122.3
O2 C2 N3 116.6 117.9
C2 N3 C4 122.0 121.3
C2 N3 HN3 119.0 119.5
C4 N3 HN3 119.0 119.3
N3 C4 O4 122.4 121.4
N3 C4 C4A 117.2 117.2
O4 C4 C4A 120.3 121.4
C4 C4A N5 120.4 122.2
C4 C4A C10 117.3 117.3
N5 C4A C10 122.0 120.5
C4A N5 C5A 120.4 120.7
C4A C10 N10 116.8 119.0
N5 C5A C6 120.0 119.8
N5 C5A C9A 122.1 120.9
C6 C5A C9A 117.8 119.3
C5A C6 C7 119.1 120.0
C5A C6 H6 120.4 120.1
C5A C9A C9 119.7 119.6
C5A C9A N10 116.1 120.3
C7 C6 H6 120.4 120.0
C6 C7 C7M 120.5 119.7
C6 C7 C8 121.4 120.7
C7M C7 C8 118.1 119.7
C7 C7M HM71 109.5 109.5
C7 C7M HM72 109.5 109.5
C7 C7M HM73 109.5 109.5
C7 C8 C8M 122.8 119.7
C7 C8 C9 119.6 120.7
HM71 C7M HM72 109.5 109.5
HM71 C7M HM73 109.4 109.4
HM72 C7M HM73 109.5 109.4
C8M C8 C9 117.5 119.7
C8 C8M HM81 109.5 109.5
C8 C8M HM82 109.5 109.5
C8 C8M HM83 109.5 109.5
C8 C9 C9A 121.7 119.8
C8 C9 H9 119.2 120.1
HM81 C8M HM82 109.5 109.5
HM81 C8M HM83 109.5 109.5
HM82 C8M HM83 109.4 109.5
C9A C9 H9 119.1 120.1
C9 C9A N10 124.2 120.1
C9A N10 C10 122.5 118.5
C9A N10 C1' 121.2 120.7
C10 N10 C1' 116.3 120.8
N10 C1' C2' 107.2 109.5
N10 C1' H1'1 110.1 109.4
N10 C1' H1'2 110.0 109.5
C2' C1' H1'1 110.0 109.5
C2' C1' H1'2 110.1 109.5
C1' C2' O2' 108.0 109.5
C1' C2' C3' 111.3 109.5
C1' C2' H2' 109.7 109.5
H1'1 C1' H1'2 109.5 109.5
O2' C2' C3' 107.0 109.5
O2' C2' H2' 111.0 109.5
C2' O2' HO2' 109.5 114.0
C3' C2' H2' 109.7 109.4
C2' C3' O3' 108.8 109.4
C2' C3' C4' 113.2 109.5
C2' C3' H3' 108.8 109.4
O3' C3' C4' 107.3 109.5
O3' C3' H3' 109.6 109.4
C3' O3' HO3' 109.5 114.0
C4' C3' H3' 109.2 109.5
C3' C4' O4' 109.9 109.5
C3' C4' C5' 110.0 109.4
C3' C4' H4' 109.5 109.5
O4' C4' C5' 107.7 109.5
O4' C4' H4' 110.4 109.4
C4' O4' HO4' 109.5 114.0
C5' C4' H4' 109.4 109.5
C4' C5' O5' 110.0 109.4
C4' C5' H5'1 109.4 109.5
C4' C5' H5'2 109.4 109.5
O5' C5' H5'1 109.4 109.5
O5' C5' H5'2 109.4 109.4
C5' O5' P 121.9 123.0
H5'1 C5' H5'2 109.4 109.5
O5' P O1P 105.0 109.5
O5' P O2P 106.7 109.5
O5' P O3P 104.8 109.5
O1P P O2P 111.8 109.4
O1P P O3P 115.6 109.5
O2P P O3P 112.0 109.5
P O2P HOP2 109.5 114.0
P O3P HOP3 109.5 114.0

Torsion Angles for FMN

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C2 N1 C10 C4A 2.7 0.1
C2 N1 C10 N10 174.1 180.0
O2 C2 N1 N3 173.8 180.0
N1 C2 N3 C4 0.7 360.0
N1 C2 N3 HN3 180.7 180.0
C10 N1 C2 O2 170.8 180.0
C10 N1 C2 N3 357.0 360.0
C4 C4A C10 N1 359.8 360.0
N5 C4A C10 N1 173.1 180.0
C4A C10 N1 N10 188.6 180.0
C9A N10 C10 N1 187.7 180.0
N1 C10 N10 C1' 4.4 0.0
O2 C2 N1 C10 170.8 180.0
N1 C2 O2 N3 185.9 180.0
O2 C2 N3 C4 186.5 179.9
O2 C2 N3 HN3 6.5 0.0
N3 C2 N1 C10 357.0 360.0
N1 C2 N3 O2 174.2 180.0
C4 N3 C2 HN3 180.0 179.9
C2 N3 C4 O4 178.2 180.0
C2 N3 C4 C4A 1.7 0.1
C2 N3 C4 HN3 180.0 180.1
O4 C4 N3 C4A 176.5 179.9
N3 C4 C4A N5 184.7 179.9
N3 C4 C4A C10 358.1 359.9
C2 N3 HN3 C4 180.0 179.9
HN3 N3 C4 O4 358.2 359.9
HN3 N3 C4 C4A 181.7 180.0
O4 C4 N3 HN3 358.2 359.9
N3 C4 O4 C4A 183.6 180.1
O4 C4 C4A N5 8.1 360.0
O4 C4 C4A C10 181.5 180.0
N1 C10 C4A C4 359.8 360.0
C4A C4 N3 HN3 181.7 180.0
N3 C4 C4A O4 176.6 179.9
N5 C4A C4 C10 186.6 180.0
C4 C4A N5 C5A 173.4 180.0
C4 C4A C10 N10 188.0 180.0
N1 C10 C4A N5 173.1 180.0
C4 C4A N5 C10 173.1 180.0
N5 C4A C10 N10 1.3 0.0
C4A N5 C5A C6 181.3 180.0
C4A N5 C5A C9A 357.4 360.0
N1 C10 C4A N10 171.8 180.0
C4 C4A C10 N5 186.7 180.0
C10 C4A N5 C5A 0.3 0.0
C9A N10 C10 C4A 359.5 360.0
C4A C10 N10 C1' 176.2 180.0
C5A N5 C4A C10 0.3 0.0
C6 C5A N5 C9A 183.9 180.0
N5 C5A C6 C7 171.6 180.0
N5 C5A C6 H6 351.6 359.9
N5 C5A C9A C9 181.0 180.1
N5 C5A C9A N10 3.2 360.0
N5 C5A C6 C9A 176.2 180.0
C6 C5A C9A C9 357.2 0.1
C6 C5A C9A N10 179.4 180.0
C7 C6 C5A H6 180.0 180.1
C5A C6 C7 C7M 187.1 180.0
C5A C6 C7 C8 9.1 360.0
N5 C5A C9A C6 183.8 180.0
C9A C5A C6 C7 355.4 0.0
C9A C5A C6 H6 175.4 179.9
C8 C9 C9A C5A 6.0 359.9
C5A C9A C9 H9 186.0 180.0
C9 C9A C5A N10 177.8 180.1
C5A C9A N10 C10 358.4 0.0
C5A C9A N10 C1' 181.9 180.0
C7 C6 C5A C9A 355.4 0.0
C5A C6 C7 H6 180.0 179.9
C7M C7 C6 C8 178.0 180.0
C6 C7 C7M HM71 91.0 90.0
C6 C7 C7M HM72 211.0 210.0
C6 C7 C7M HM73 331.0 330.0
C6 C7 C8 C8M 171.2 180.1
C6 C7 C8 C9 353.8 360.0
H6 C6 C5A C9A 175.4 179.9
C5A C6 H6 C7 180.0 180.1
H6 C6 C7 C7M 7.1 0.1
H6 C6 C7 C8 189.1 180.1
C7M C7 C6 H6 7.1 0.1
C6 C7 C7M C8 182.0 180.0
C7M C7 C8 C8M 353.2 0.0
C7M C7 C8 C9 175.8 179.9
HM71 C7M C7 HM72 240.0 240.0
HM71 C7M C7 HM73 120.0 120.0
HM72 C7M C7 HM73 240.0 240.0
C8 C7 C6 H6 189.1 180.1
C6 C7 C8 C7M 178.0 180.0
C8 C7 C7M HM71 269.0 270.0
C8 C7 C7M HM72 29.1 30.0
C8 C7 C7M HM73 149.1 150.0
C8M C8 C7 C9 177.4 180.1
C7 C8 C8M HM81 91.4 90.0
C7 C8 C8M HM82 211.4 210.0
C7 C8 C8M HM83 331.4 330.0
C7 C8 C9 C9A 358.3 0.1
C7 C8 C9 H9 178.3 179.9
HM71 C7M C7 C8 269.0 270.0
C7 C7M HM71 HM72 120.0 120.0
C7 C7M HM71 HM73 240.0 240.0
HM72 C7M HM71 HM73 120.0 119.9
HM72 C7M C7 C8 29.1 30.0
C7 C7M HM72 HM71 240.0 239.9
C7 C7M HM72 HM73 120.0 120.1
HM71 C7M HM72 HM73 240.0 240.1
HM73 C7M C7 C8 149.1 150.0
C7 C7M HM73 HM71 120.0 120.0
C7 C7M HM73 HM72 240.0 240.0
HM71 C7M HM73 HM72 120.0 119.9
C7 C8 C8M C9 182.6 179.9
C8M C8 C9 C9A 180.8 180.0
C8M C8 C9 H9 0.8 359.8
HM81 C8M C8 HM82 240.0 240.0
HM81 C8M C8 HM83 120.0 120.0
HM82 C8M C8 HM83 240.1 240.0
C5A C9A C9 C8 6.0 359.9
C7 C8 C9 C8M 177.5 180.1
C9 C8 C8M HM81 268.8 270.1
C9 C8 C8M HM82 28.9 30.1
C9 C8 C8M HM83 148.8 150.1
C9A C9 C8 H9 180.0 180.2
C8 C9 C9A N10 183.6 180.0
HM81 C8M C8 C9 268.8 270.1
C8 C8M HM81 HM82 120.0 120.0
C8 C8M HM81 HM83 240.0 240.0
HM82 C8M HM81 HM83 119.9 120.0
HM82 C8M C8 C9 28.9 30.1
C8 C8M HM82 HM81 239.9 240.0
C8 C8M HM82 HM83 120.0 120.0
HM81 C8M HM82 HM83 240.0 240.0
HM83 C8M C8 C9 148.8 150.1
C8 C8M HM83 HM81 120.1 120.0
C8 C8M HM83 HM82 240.0 240.0
HM81 C8M HM83 HM82 120.0 120.0
C5A C9A C9 N10 182.4 179.9
C8 C9 C9A H9 180.0 179.8
C9 C9A N10 C10 180.7 179.9
C9 C9A N10 C1' 4.2 359.9
C8 C9 H9 C9A 180.0 180.2
H9 C9 C9A N10 3.6 0.1
N1 C10 N10 C9A 187.7 180.0
C4A C10 N10 C9A 359.5 360.0
C5A C9A N10 C9 177.7 180.1
N10 C9A C9 H9 3.6 0.1
C10 N10 C9A C1' 176.5 180.0
C9A N10 C1' C2' 98.8 90.0
C9A N10 C1' H1'1 218.5 210.0
C9A N10 C1' H1'2 339.2 330.0
N1 C10 N10 C4A 188.2 180.0
C9A N10 C10 C1' 183.3 180.0
C10 N10 C1' C2' 282.1 270.0
C10 N10 C1' H1'1 41.8 30.0
C10 N10 C1' H1'2 162.5 150.0
C9A N10 C1' C10 176.7 180.0
C2' C1' N10 H1'1 240.4 240.0
C2' C1' N10 H1'2 119.6 120.0
N10 C1' C2' O2' 287.2 300.0
N10 C1' C2' C3' 169.9 180.0
N10 C1' C2' H2' 48.3 60.0
H1'1 C1' N10 H1'2 239.3 240.0
N10 C1' C2' H1'1 119.6 119.9
N10 C1' C2' H1'2 240.4 240.0
H1'1 C1' C2' H1'2 120.7 120.0
O2' C2' C1' C3' 117.2 120.0
O2' C2' C1' H2' 238.8 240.0
C1' C2' O2' HO2' 180.0 300.0
C3' C2' C1' H2' 121.6 120.0
C1' C2' C3' O3' 59.9 300.0
C1' C2' C3' C4' 300.8 180.0
C1' C2' C3' H3' 179.3 60.0
N10 C1' H1'1 C2' 242.1 240.0
N10 C1' H1'1 H1'2 121.0 120.0
C2' C1' H1'1 H1'2 238.9 240.0
H1'1 C1' C2' O2' 167.5 180.1
H1'1 C1' C2' C3' 50.3 60.0
H1'1 C1' C2' H2' 288.7 300.0
N10 C1' H1'2 C2' 117.9 120.0
N10 C1' H1'2 H1'1 238.9 240.0
C2' C1' H1'2 H1'1 121.1 120.0
H1'2 C1' C2' O2' 46.8 60.0
H1'2 C1' C2' C3' 289.6 300.0
H1'2 C1' C2' H2' 168.0 180.0
O2' C2' C1' H1'1 167.5 180.1
O2' C2' C1' H1'2 46.8 60.0
C1' C2' O2' C3' 240.0 240.0
C1' C2' O2' H2' 120.3 120.0
C3' C2' O2' H2' 240.3 240.0
O2' C2' C3' O3' 302.1 180.0
O2' C2' C3' C4' 183.0 60.0
O2' C2' C3' H3' 61.4 299.9
C3' C2' C1' H1'1 50.3 60.0
C3' C2' C1' H1'2 289.6 300.0
C1' C2' C3' O2' 117.9 120.0
C1' C2' C3' H2' 238.4 240.0
O2' C2' C3' H2' 120.6 120.0
C3' C2' O2' HO2' 300.0 60.0
O3' C3' C2' C4' 119.1 120.0
O3' C3' C2' H3' 240.6 240.1
C2' C3' O3' HO3' 180.0 299.9
C4' C3' C2' H3' 121.5 120.0
C2' C3' C4' O4' 315.5 300.0
C2' C3' C4' C5' 197.1 180.0
C2' C3' C4' H4' 76.9 60.0
H2' C2' C1' H1'1 288.7 300.0
H2' C2' C1' H1'2 168.0 180.0
C1' C2' H2' O2' 240.7 240.0
C1' C2' H2' C3' 122.6 120.0
O2' C2' H2' C3' 241.9 240.0
H2' C2' O2' HO2' 59.7 180.0
H2' C2' C3' O3' 181.5 60.0
H2' C2' C3' C4' 62.4 300.0
H2' C2' C3' H3' 300.9 180.0
HO2' O2' C2' C3' 300.0 60.0
HO2' O2' C2' H2' 59.7 180.0
O3' C3' C2' H2' 181.5 60.0
C2' C3' O3' C4' 237.2 240.0
C2' C3' O3' H3' 118.9 119.9
C4' C3' O3' H3' 241.6 240.0
O3' C3' C4' O4' 195.5 180.0
O3' C3' C4' C5' 77.1 60.0
O3' C3' C4' H4' 316.9 300.0
C4' C3' C2' H2' 62.4 300.0
C2' C3' C4' O3' 120.0 120.0
C2' C3' C4' H3' 238.7 240.0
O3' C3' C4' H3' 118.7 120.0
C4' C3' O3' HO3' 302.8 59.9
O4' C4' C3' C5' 118.4 120.0
O4' C4' C3' H4' 238.7 240.1
C3' C4' O4' HO4' 180.0 300.0
C5' C4' C3' H4' 120.2 120.0
C3' C4' C5' O5' 64.8 185.0
C3' C4' C5' H5'1 184.9 305.0
C3' C4' C5' H5'2 304.7 65.1
H3' C3' C2' H2' 300.9 180.0
C2' C3' H3' O3' 241.1 240.1
C2' C3' H3' C4' 123.9 120.0
O3' C3' H3' C4' 242.8 240.0
H3' C3' O3' HO3' 61.2 180.0
H3' C3' C4' O4' 76.8 60.0
H3' C3' C4' C5' 318.4 300.0
H3' C3' C4' H4' 198.2 180.0
HO3' O3' C3' C4' 302.8 59.9
HO3' O3' C3' H3' 61.2 180.0
O4' C4' C3' H3' 76.8 60.0
C3' C4' O4' C5' 240.2 240.0
C3' C4' O4' H4' 120.8 120.0
C5' C4' O4' H4' 240.6 239.9
O4' C4' C5' O5' 305.1 65.0
O4' C4' C5' H5'1 65.2 185.0
O4' C4' C5' H5'2 185.0 305.1
C5' C4' C3' H3' 318.4 300.0
C3' C4' C5' O4' 119.7 120.0
C3' C4' C5' H4' 239.7 240.0
O4' C4' C5' H4' 120.0 120.0
C5' C4' O4' HO4' 299.8 60.0
O5' C5' C4' H5'1 239.9 240.0
O5' C5' C4' H5'2 120.1 119.9
C4' C5' O5' P 195.1 180.0
H5'1 C5' C4' H5'2 240.2 239.9
H4' C4' C3' H3' 198.2 180.0
C3' C4' H4' O4' 238.9 240.0
C3' C4' H4' C5' 120.6 120.0
O4' C4' H4' C5' 241.6 240.0
H4' C4' O4' HO4' 59.2 180.1
H4' C4' C5' O5' 185.1 305.0
H4' C4' C5' H5'1 305.2 65.0
H4' C4' C5' H5'2 65.0 185.1
HO4' O4' C4' C5' 299.8 60.0
HO4' O4' C4' H4' 59.2 180.1
O5' C5' C4' H4' 185.1 305.0
C4' C5' O5' H5'1 120.1 120.0
C4' C5' O5' H5'2 239.9 240.1
H5'1 C5' O5' H5'2 119.8 120.1
C5' O5' P O1P 60.7 55.0
C5' O5' P O2P 301.9 175.0
C5' O5' P O3P 183.0 295.0
H5'1 C5' C4' H4' 305.2 65.0
C4' C5' H5'1 O5' 239.5 240.0
C4' C5' H5'1 H5'2 119.8 120.0
O5' C5' H5'1 H5'2 240.2 240.0
H5'1 C5' O5' P 75.0 60.0
H5'2 C5' C4' H4' 65.0 185.1
C4' C5' H5'2 O5' 120.5 119.9
C4' C5' H5'2 H5'1 240.2 239.9
O5' C5' H5'2 H5'1 119.8 120.0
H5'2 C5' O5' P 315.2 299.9
P O5' C5' H5'1 75.0 60.0
P O5' C5' H5'2 315.2 299.9
O1P P O5' O2P 118.8 240.0
O1P P O5' O3P 237.7 120.0
O2P P O5' O3P 118.9 240.0
O5' P O2P HOP2 114.2 180.0
O5' P O3P HOP3 244.9 300.0
O5' P O1P O2P 244.7 120.0
O5' P O1P O3P 115.0 240.0
O2P P O1P O3P 230.3 120.0
O1P P O2P HOP2 360.0 300.0
O1P P O3P HOP3 360.0 180.0
O5' P O2P O1P 114.3 240.0
O5' P O2P O3P 245.8 120.0
O1P P O2P O3P 131.6 240.0
O2P P O3P HOP3 129.6 60.0
O5' P O3P O1P 244.9 120.0
O5' P O3P O2P 115.3 240.0
O1P P O3P O2P 230.4 120.0
O3P P O2P HOP2 228.4 60.0
HOP2 O2P P O3P 228.4 60.0