PDB Chemical Component FMG

Ideal Model

Chemical Description

Name 2-amino-9-(2-deoxy-2-fluoro-5-O-phosphono-beta-D-arabinofuranosyl)-7-methyl-6-oxo-6,9-dihydro-1H-purin-7-ium
Formula C11 H16 F N5 O7 P
Formal charge 1
Molecular weight 380.246 g/mol
Component type DNA linking
Nonstandard Parent Id DG

Chemical features

Atom count 41
Chiral atom count 4
Chiral atoms C2' C4' C1' C3'
Observed leaving atoms OP3 HO3'
Bond count 43
Aromatic bond count 5

Chemical Identifiers

Systematic name (ACDLabs) 2-amino-9-(2-deoxy-2-fluoro-5-O-phosphono-beta-D-arabinofuranosyl)-7-methyl-6-oxo-6,9-dihydro-1H-purin-7-ium
Systematic name (OpenEye OEToolkits) [(2R,3R,4S,5R)-5-(2-amino-7-methyl-6-oxo-1H-purin-7-ium-9-yl)-4-fluoro-3-hydroxy-oxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) C[n+]1cn([C@@H]2O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@@H]2F)c3N=C(N)NC(=O)c13
SMILES (CACTVS) C[n+]1cn([CH]2O[CH](CO[P](O)(O)=O)[CH](O)[CH]2F)c3N=C(N)NC(=O)c13
Stereo SMILES (OpenEye) C[n+]1cn(c2c1C(=O)NC(=N2)N)[C@H]3[C@H]([C@@H]([C@H](O3)COP(=O)(O)O)O)F
InChI descriptor InChI=1S/C11H15FN5O7P/c1-16-3-17(8-6(16)9(19)15-11(13)14-8)10-5(12)7(18)4(24-10)2-23-25(20,21)22/h3-5,7,10,18H,2H2,1H3,(H4-,13,14,15,19,20,21,22)/p+1/t4-,5+,7-,10-/m1/s1
InChIKey descriptor JUZJEHBSRYAJTC-GQTRHBFLSA-O

Status Information

Last modified 2011-06-04
Created 2008-06-10
Release status REL
Model PDB code 3D4V
Processing site RCSB