PDB Chemical Component FMG

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for FMG

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
P OP2 1.491 1.610
P OP1 1.490 1.479
P OP3 1.602 1.610
P O5' 1.593 1.610
O5' C5' 1.434 1.429
F1' C2' 1.357 1.399
N9 C8 1.385 1.364
N9 C4 1.380 1.368
N9 C1' 1.480 1.465
C8 N7 1.303 1.301
C8 H8 1.080 1.080
N7 CM7 1.494 1.465
N7 C5 1.383 1.356
CM7 HM7 1.100 1.090
CM7 HM7A 1.100 1.090
CM7 HM7B 1.100 1.090
C5 C4 1.395 1.400
C5 C6 1.440 1.414
C4 N3 1.372 1.338
N3 C2 1.349 1.315
C2 N2 1.345 1.372
C2 N1 1.396 1.363
N2 HN2 1.000 0.970
N2 HN2A 1.000 0.971
N1 C6 1.412 1.351
N1 HN1 1.000 0.969
C6 O6 1.240 1.219
C2' C1' 1.518 1.545
C2' C3' 1.520 1.545
C2' H2' 1.100 1.089
C5' C4' 1.511 1.530
C5' H5' 1.100 1.090
C5' H5'A 1.100 1.090
C4' O4' 1.453 1.444
C4' C3' 1.535 1.545
C4' H4' 1.100 1.089
O4' C1' 1.405 1.444
C1' H1' 1.101 1.090
C3' O3' 1.426 1.429
C3' H3' 1.100 1.090
O3' HO3' 0.950 0.968
OP2 HOP2 0.950 0.967
OP3 HOP3 0.950 0.966

Bond Angles for FMG

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
OP2 P OP1 119.6 109.5
OP2 P OP3 109.2 109.5
OP2 P O5' 108.7 109.4
P OP2 HOP2 109.5 114.0
OP1 P OP3 107.9 109.5
OP1 P O5' 108.6 109.5
OP3 P O5' 101.2 109.5
P OP3 HOP3 109.5 114.0
P O5' C5' 119.9 123.0
O5' C5' C4' 111.6 109.5
O5' C5' H5' 108.8 109.5
O5' C5' H5'A 108.3 109.5
F1' C2' C1' 117.5 110.5
F1' C2' C3' 113.8 110.5
F1' C2' H2' 98.5 110.5
C8 N9 C4 105.4 107.5
C8 N9 C1' 128.5 126.3
N9 C8 N7 113.5 109.8
N9 C8 H8 123.2 125.1
C4 N9 C1' 126.1 126.2
N9 C4 C5 106.0 106.1
N9 C4 N3 125.7 134.2
N9 C1' C2' 117.6 110.4
N9 C1' O4' 110.9 110.4
N9 C1' H1' 101.2 110.4
N7 C8 H8 123.2 125.1
C8 N7 CM7 125.1 125.4
C8 N7 C5 105.0 109.3
CM7 N7 C5 129.8 125.3
N7 CM7 HM7 109.5 109.5
N7 CM7 HM7A 109.5 109.5
N7 CM7 HM7B 109.4 109.4
N7 C5 C4 110.0 107.2
N7 C5 C6 131.4 134.2
HM7 CM7 HM7A 109.5 109.5
HM7 CM7 HM7B 109.5 109.5
HM7A CM7 HM7B 109.5 109.5
C4 C5 C6 118.6 118.6
C5 C4 N3 128.3 119.7
C5 C6 N1 112.4 118.4
C5 C6 O6 128.3 120.8
C4 N3 C2 112.8 121.1
N3 C2 N2 120.2 119.0
N3 C2 N1 123.2 121.9
N2 C2 N1 116.6 119.0
C2 N2 HN2 110.2 120.0
C2 N2 HN2A 124.9 120.0
C2 N1 C6 124.8 120.3
C2 N1 HN1 117.6 119.9
HN2 N2 HN2A 124.9 119.9
C6 N1 HN1 117.6 119.8
N1 C6 O6 119.3 120.8
C1' C2' C3' 102.9 104.0
C1' C2' H2' 110.3 110.5
C2' C1' O4' 104.9 104.8
C2' C1' H1' 107.7 110.4
C3' C2' H2' 114.4 110.7
C2' C3' C4' 103.9 104.1
C2' C3' O3' 111.1 110.5
C2' C3' H3' 111.9 110.5
C4' C5' H5' 108.8 109.4
C4' C5' H5'A 108.3 109.5
C5' C4' O4' 111.1 110.4
C5' C4' C3' 113.8 110.3
C5' C4' H4' 104.4 110.3
H5' C5' H5'A 111.1 109.5
O4' C4' C3' 106.5 104.8
O4' C4' H4' 112.0 110.4
C4' O4' C1' 108.2 105.3
C3' C4' H4' 109.2 110.5
C4' C3' O3' 109.3 110.5
C4' C3' H3' 113.8 110.6
O4' C1' H1' 114.8 110.4
O3' C3' H3' 106.9 110.5
C3' O3' HO3' 109.5 114.0

Torsion Angles for FMG

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
OP1 P OP2 OP3 235.0 240.0
OP1 P OP2 O5' 125.5 120.0
OP3 P OP2 O5' 250.5 240.0
OP2 P OP3 HOP3 130.5 299.9
OP2 P O5' C5' 224.8 65.0
OP2 P OP1 OP3 125.5 120.0
OP2 P OP1 O5' 234.4 240.0
OP1 P OP2 HOP2 8.2 180.0
OP3 P OP1 O5' 108.9 120.0
OP1 P OP3 HOP3 262.0 60.0
OP1 P O5' C5' 93.1 305.1
OP2 P OP3 OP1 228.5 240.0
OP2 P OP3 O5' 114.5 120.0
OP3 P OP2 HOP2 133.2 300.0
OP1 P OP3 O5' 246.0 240.0
OP3 P O5' C5' 339.7 185.0
OP2 P O5' OP1 131.7 120.0
OP2 P O5' OP3 245.2 240.0
O5' P OP2 HOP2 242.7 60.0
OP1 P O5' OP3 113.5 120.0
O5' P OP3 HOP3 16.0 180.0
P O5' C5' C4' 115.9 180.0
P O5' C5' H5' 235.9 299.9
P O5' C5' H5'A 356.8 59.9
C4' C5' O5' H5' 240.0 240.1
C4' C5' O5' H5'A 119.1 120.0
O5' C5' C4' O4' 272.4 66.4
O5' C5' C4' C3' 32.5 181.8
O5' C5' C4' H4' 151.5 304.1
H5' C5' O5' H5'A 239.1 240.0
N9 C1' C2' F1' 34.8 24.1
C1' C2' F1' C3' 120.3 114.6
C1' C2' F1' H2' 241.7 237.4
F1' C2' C1' O4' 271.0 265.3
F1' C2' C1' H1' 148.3 146.4
C3' C2' F1' H2' 121.4 122.8
F1' C2' C3' C4' 103.6 118.6
F1' C2' C3' O3' 221.0 237.3
F1' C2' C3' H3' 340.4 359.9
C4 N9 C8 C1' 180.0 180.3
C8 N9 C4 C5 359.9 0.0
C8 N9 C4 N3 180.0 180.0
C8 N9 C1' C2' 306.6 265.1
C8 N9 C1' O4' 67.3 20.4
C8 N9 C1' H1' 189.6 142.8
N7 C8 N9 H8 180.0 180.0
N9 C8 N7 CM7 180.1 180.0
N9 C8 N7 C5 0.0 360.0
C8 N9 C4 C1' 180.0 179.7
C4 N9 C8 N7 0.1 0.0
C4 N9 C8 H8 180.0 180.0
C4 N9 C1' C2' 126.6 84.7
C4 N9 C1' O4' 247.3 200.1
C4 N9 C1' H1' 9.6 322.4
N7 C5 C4 N9 0.2 360.0
N9 C4 C5 C6 180.3 180.1
C5 C4 N9 N3 179.9 180.0
N9 C4 N3 C2 179.9 180.0
F1' C2' C1' N9 34.8 24.1
C8 N9 C1' C4 180.0 180.3
C1' N9 C8 N7 180.1 179.7
C1' N9 C8 H8 0.0 359.7
C1' N9 C4 C5 179.9 180.3
C1' N9 C4 N3 360.0 0.3
N9 C1' C2' C3' 160.7 142.8
N9 C1' C2' H2' 283.0 261.6
C2' C1' N9 O4' 239.3 244.6
C2' C1' N9 H1' 117.0 122.3
C4' O4' C1' N9 197.2 200.7
O4' C1' N9 H1' 237.7 237.7
N7 C8 N9 C4 0.1 0.0
N7 C8 N9 C1' 180.1 179.7
N9 C8 N7 H8 180.0 180.0
CM7 N7 C8 C5 180.0 180.1
C8 N7 CM7 HM7 200.4 89.9
C8 N7 CM7 HM7A 320.4 210.0
C8 N7 CM7 HM7B 80.4 329.9
C8 N7 C5 C4 359.9 0.1
C8 N7 C5 C6 179.8 179.9
H8 C8 N9 C4 180.0 180.0
H8 C8 N9 C1' 0.0 359.7
N9 C8 H8 N7 180.0 180.1
H8 C8 N7 CM7 0.1 0.1
H8 C8 N7 C5 180.1 180.0
CM7 N7 C8 H8 0.1 0.1
C8 N7 CM7 C5 180.0 179.9
CM7 N7 C5 C4 179.8 180.0
CM7 N7 C5 C6 359.7 359.9
HM7 CM7 N7 HM7A 240.0 240.0
HM7 CM7 N7 HM7B 120.0 120.0
HM7A CM7 N7 HM7B 240.0 240.0
N9 C4 C5 N7 0.2 360.0
C5 N7 C8 H8 180.1 180.0
C8 N7 C5 CM7 180.0 180.1
C5 N7 CM7 HM7 20.4 270.0
C5 N7 CM7 HM7A 140.4 30.1
C5 N7 CM7 HM7B 260.4 150.0
C4 C5 N7 C6 180.1 180.1
N7 C5 C4 N3 180.0 180.0
N7 C5 C6 N1 180.0 180.0
N7 C5 C6 O6 359.9 0.1
HM7 CM7 N7 C5 20.4 270.0
N7 CM7 HM7 HM7A 120.0 120.0
N7 CM7 HM7 HM7B 240.0 240.1
HM7A CM7 HM7 HM7B 120.0 120.0
HM7A CM7 N7 C5 140.4 30.1
N7 CM7 HM7A HM7 240.0 240.0
N7 CM7 HM7A HM7B 120.0 119.9
HM7 CM7 HM7A HM7B 240.0 239.9
HM7B CM7 N7 C5 260.4 150.0
N7 CM7 HM7B HM7 120.0 120.0
N7 CM7 HM7B HM7A 240.0 240.1
HM7 CM7 HM7B HM7A 120.0 120.1
C5 C4 N9 C1' 179.9 180.3
N9 C4 C5 N3 180.1 180.0
N7 C5 C4 C6 179.9 179.9
C4 C5 C6 N1 359.8 359.9
C4 C5 C6 O6 179.8 179.9
C5 C4 N3 C2 360.0 359.9
N7 C5 C6 C4 180.1 180.1
C6 C5 C4 N3 0.1 0.1
C2 N1 C6 C5 0.1 0.1
C5 C6 N1 HN1 180.1 180.1
N1 C6 C5 O6 180.0 180.0
N3 C4 N9 C1' 360.0 0.3
N9 C4 N3 C5 179.9 180.1
N3 C4 C5 C6 0.1 0.1
C4 N3 C2 N2 180.0 180.0
C4 N3 C2 N1 359.9 0.1
N2 C2 N3 N1 180.1 180.0
N3 C2 N2 HN2 180.0 0.1
N3 C2 N2 HN2A 360.0 180.0
N3 C2 N1 C6 0.1 360.0
N3 C2 N1 HN1 180.1 180.0
N3 C2 N2 N1 179.9 180.0
N2 C2 N1 C6 180.0 180.0
N2 C2 N1 HN1 0.0 360.0
HN2 N2 C2 HN2A 180.0 180.1
C5 C6 N1 C2 0.1 0.1
N3 C2 N1 N2 180.1 180.0
N1 C2 N2 HN2 0.0 180.1
N1 C2 N2 HN2A 180.0 0.0
C6 N1 C2 HN1 180.0 180.0
C2 N1 C6 O6 180.1 180.0
HN2 N2 C2 N1 0.0 180.1
C2 N2 HN2 HN2A 180.0 179.9
HN2A N2 C2 N1 180.0 0.0
C2 N2 HN2A HN2 180.0 180.1
C5 C6 N1 O6 180.0 180.0
C2 N1 C6 HN1 180.0 180.0
C2 N1 HN1 C6 180.0 180.0
HN1 N1 C6 O6 0.1 0.0
C5 C6 O6 N1 180.0 180.0
O6 C6 N1 HN1 0.1 0.0
F1' C2' C1' C3' 234.2 241.3
F1' C2' C1' H2' 111.8 122.5
N9 C1' C2' O4' 123.8 118.8
N9 C1' C2' H1' 246.5 237.7
C3' C2' C1' H2' 237.6 241.2
C1' C2' C3' C4' 335.4 0.0
C1' C2' C3' O3' 92.7 118.6
C1' C2' C3' H3' 212.2 241.3
C4' O4' C1' C2' 325.1 319.5
O4' C1' C2' H1' 122.8 118.9
F1' C2' C3' C1' 128.2 118.6
F1' C2' C3' H2' 247.9 237.3
C1' C2' C3' H2' 119.6 118.7
C3' C2' C1' O4' 36.9 24.0
C3' C2' C1' H1' 274.1 265.1
C5' C4' C3' C2' 242.4 217.2
O4' C4' C3' C2' 5.1 336.0
C2' C3' C4' H4' 126.2 94.9
C4' C3' C2' O3' 242.6 241.4
C4' C3' C2' H3' 123.2 118.7
O3' C3' C2' H3' 240.6 237.4
C2' C3' O3' HO3' 125.0 61.4
F1' C2' H2' C1' 236.4 237.4
F1' C2' H2' C3' 121.0 122.7
C1' C2' H2' C3' 244.7 245.3
H2' C2' C1' O4' 159.3 142.7
H2' C2' C1' H1' 36.5 23.9
H2' C2' C3' C4' 215.7 241.3
H2' C2' C3' O3' 333.1 360.0
H2' C2' C3' H3' 92.5 122.6
O5' C5' C4' H5' 120.0 120.0
O5' C5' C4' H5'A 240.9 239.9
C2' C3' C4' C5' 242.4 217.2
H5' C5' C4' H5'A 120.9 120.0
O4' C4' C5' C3' 239.9 244.6
O4' C4' C5' H4' 120.9 122.3
C5' C4' O4' C1' 143.0 159.3
C3' C4' C5' H4' 241.0 237.7
C5' C4' C3' O3' 123.8 98.5
C5' C4' C3' H3' 4.4 335.8
O5' C5' H5' C4' 238.3 240.0
O5' C5' H5' H5'A 119.1 120.0
C4' C5' H5' H5'A 240.9 240.0
H5' C5' C4' O4' 152.4 306.5
H5' C5' C4' C3' 272.5 61.8
H5' C5' C4' H4' 31.5 184.2
O5' C5' H5'A C4' 121.2 120.0
O5' C5' H5'A H5' 240.6 240.0
C4' C5' H5'A H5' 119.4 120.0
H5'A C5' C4' O4' 31.5 186.5
H5'A C5' C4' C3' 151.6 301.9
H5'A C5' C4' H4' 270.6 64.2
N9 C1' O4' C4' 197.2 200.7
C2' C1' O4' C4' 325.1 319.5
C2' C3' C4' O4' 5.1 336.0
O4' C4' C5' H5' 152.4 306.5
O4' C4' C5' H5'A 31.5 186.5
C5' C4' O4' C3' 124.4 118.8
C5' C4' O4' H4' 243.7 237.8
C3' C4' O4' H4' 119.3 119.0
O4' C4' C3' O3' 246.4 217.4
O4' C4' C3' H3' 127.1 94.7
C4' O4' C1' H1' 83.1 78.3
C4' C3' C2' H2' 215.7 241.3
C2' C3' C4' O3' 118.7 118.6
C2' C3' C4' H3' 238.0 241.3
C3' C4' C5' H5' 272.5 61.8
C3' C4' C5' H5'A 151.6 301.9
C5' C4' C3' O4' 237.3 241.1
C5' C4' C3' H4' 116.2 122.2
O4' C4' C3' H4' 238.9 241.1
C3' C4' O4' C1' 18.6 40.5
O3' C3' C4' H3' 119.4 122.7
C4' C3' O3' HO3' 239.1 176.1
H4' C4' C5' H5' 31.5 184.2
H4' C4' C5' H5'A 270.6 64.2
C5' C4' H4' O4' 120.3 122.3
C5' C4' H4' C3' 238.0 237.8
O4' C4' H4' C3' 117.7 115.4
H4' C4' O4' C1' 259.3 281.6
H4' C4' C3' O3' 7.6 336.3
H4' C4' C3' H3' 248.2 213.6
N9 C1' O4' C2' 232.1 241.2
N9 C1' O4' H1' 114.0 122.3
O4' C1' C2' C3' 36.9 24.0
O4' C1' C2' H2' 159.3 142.7
C2' C1' O4' H1' 242.0 241.2
C1' O4' C4' C3' 18.6 40.5
C1' O4' C4' H4' 259.3 281.6
N9 C1' H1' C2' 124.0 122.3
N9 C1' H1' O4' 240.4 237.7
H1' C1' C2' C3' 274.1 265.1
H1' C1' C2' H2' 36.5 23.9
C2' C1' H1' O4' 116.4 115.4
O3' C3' C2' H2' 333.1 360.0
C2' C3' O3' C4' 245.9 245.4
C2' C3' O3' H3' 122.4 122.6
O3' C3' C4' H4' 7.6 336.3
C4' C3' O3' H3' 236.5 237.3
H3' C3' C2' H2' 92.5 122.6
C2' C3' H3' C4' 117.4 114.7
C2' C3' H3' O3' 238.1 237.4
H3' C3' C4' H4' 248.2 213.6
C4' C3' H3' O3' 120.7 122.7
H3' C3' O3' HO3' 2.6 298.8
HO3' O3' C3' H3' 2.6 298.8
HOP2 OP2 P OP1 8.2 180.0
HOP2 OP2 P OP3 133.2 300.0
HOP2 OP2 P O5' 242.7 60.0
HOP3 OP3 P O5' 16.0 180.0