PDB Chemical Component FMD

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for FMD

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
F17 C1 1.345 1.352
C1 C2 1.404 1.397
C1 C6 1.402 1.383
C2 C18 1.408 1.431
C2 C3 1.472 1.403
C18 C19 1.196 1.174
C19 C20 1.408 1.471
C20 O27 1.431 1.429
C20 C23 1.550 1.529
C20 H20 1.115 1.090
O27 H27 0.950 0.966
C23 N28 1.469 1.468
C23 C24 1.540 1.530
C23 H23 1.115 1.090
N28 H281 1.020 1.008
N28 H282 1.020 1.009
C24 O26 1.434 1.428
C24 C25 1.546 1.531
C24 H24 1.115 1.090
O26 H26 0.950 0.967
C25 H251 1.115 1.090
C25 H252 1.115 1.090
C25 H253 1.115 1.090
C3 C4 1.429 1.401
C3 C7 1.358 1.475
C4 N9 1.381 1.390
C4 C5 1.388 1.389
N9 C8 1.406 1.344
N9 HN9 1.020 0.970
C8 O10 1.215 1.219
C8 C7 1.503 1.422
C5 C6 1.408 1.382
C5 HC5 1.103 1.080
C6 HC6 1.103 1.080
C7 C11 1.472 1.387
C11 C12 1.462 1.402
C11 H11 1.103 1.080
C12 C13 1.382 1.394
C12 N16 1.380 1.384
C13 O21 1.382 1.357
C13 C14 1.459 1.401
O21 C22 1.437 1.429
C22 H221 1.115 1.090
C22 H222 1.115 1.090
C22 H223 1.115 1.090
C14 C15 1.358 1.355
C14 H14 1.103 1.079
C15 N16 1.357 1.357
C15 H15 1.103 1.080
N16 H16 1.020 0.970

Bond Angles for FMD

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
F17 C1 C2 117.3 120.0
F17 C1 C6 119.6 120.0
C2 C1 C6 123.1 120.0
C1 C2 C18 120.0 120.3
C1 C2 C3 115.8 119.3
C1 C6 C5 120.9 120.8
C1 C6 HC6 119.4 119.6
C18 C2 C3 124.1 120.3
C2 C18 C19 178.9 180.0
C2 C3 C4 119.7 120.2
C2 C3 C7 132.2 133.6
C18 C19 C20 177.7 180.0
C19 C20 O27 108.3 109.5
C19 C20 C23 114.7 109.5
C19 C20 H20 108.9 109.5
O27 C20 C23 115.0 109.5
O27 C20 H20 108.5 109.5
C20 O27 H27 108.3 106.7
C23 C20 H20 101.1 109.4
C20 C23 N28 113.1 109.5
C20 C23 C24 105.9 109.5
C20 C23 H23 109.4 109.4
N28 C23 C24 109.3 109.5
N28 C23 H23 106.0 109.5
C23 N28 H281 110.9 106.7
C23 N28 H282 113.1 106.8
C24 C23 H23 113.2 109.5
C23 C24 O26 112.6 109.5
C23 C24 C25 113.3 109.4
C23 C24 H24 104.4 109.5
H281 N28 H282 110.9 106.6
O26 C24 C25 109.0 109.4
O26 C24 H24 109.0 109.5
C24 O26 H26 112.6 106.8
C25 C24 H24 108.3 109.4
C24 C25 H251 110.8 109.4
C24 C25 H252 113.3 109.5
C24 C25 H253 110.8 109.4
H251 C25 H252 110.8 109.5
H251 C25 H253 99.5 109.5
H252 C25 H253 110.8 109.5
C4 C3 C7 108.2 106.2
C3 C4 N9 106.3 108.3
C3 C4 C5 121.9 119.4
C3 C7 C8 110.8 105.7
C3 C7 C11 126.1 127.1
N9 C4 C5 131.8 132.4
C4 N9 C8 114.1 110.9
C4 N9 HN9 122.1 124.6
C4 C5 C6 118.6 120.4
C4 C5 HC5 120.0 119.8
C8 N9 HN9 123.8 124.5
N9 C8 O10 123.9 125.5
N9 C8 C7 100.6 108.9
O10 C8 C7 135.5 125.5
C8 C7 C11 123.1 127.2
C6 C5 HC5 121.4 119.8
C5 C6 HC6 119.7 119.6
C7 C11 C12 133.4 120.0
C7 C11 H11 113.8 120.0
C12 C11 H11 112.8 120.0
C11 C12 C13 129.3 126.4
C11 C12 N16 121.8 126.4
C13 C12 N16 109.0 107.1
C12 C13 O21 126.1 126.5
C12 C13 C14 105.0 107.0
C12 N16 C15 109.3 108.7
C12 N16 H16 126.0 125.7
O21 C13 C14 128.9 126.5
C13 O21 C22 119.3 106.8
C13 C14 C15 107.8 108.0
C13 C14 H14 128.9 126.0
O21 C22 H221 108.7 109.5
O21 C22 H222 119.3 109.5
O21 C22 H223 108.7 109.5
H221 C22 H222 108.7 109.5
H221 C22 H223 101.3 109.4
H222 C22 H223 108.7 109.5
C15 C14 H14 123.3 126.0
C14 C15 N16 108.9 109.2
C14 C15 H15 125.6 125.3
N16 C15 H15 125.5 125.4
C15 N16 H16 124.7 125.6

Torsion Angles for FMD

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C2 C1 F17 C6 180.3 180.0
F17 C1 C2 C18 359.0 0.0
F17 C1 C2 C3 179.5 179.7
F17 C1 C6 C5 180.5 180.0
F17 C1 C6 HC6 0.5 360.0
F17 C1 C2 C6 179.7 180.0
C2 C1 C6 C5 0.2 0.1
C2 C1 C6 HC6 180.2 180.0
C18 C2 C1 C3 179.5 180.3
C1 C2 C18 C19 172.9 197.4
C1 C2 C3 C4 359.8 0.6
C1 C2 C3 C7 180.8 179.6
F17 C1 C6 C2 180.3 180.0
C6 C1 C2 C18 179.3 180.0
C6 C1 C2 C3 359.8 359.7
C4 C5 C6 C1 0.3 360.0
C1 C6 C5 HC5 180.3 179.9
C5 C6 C1 HC6 180.0 180.1
C18 C2 C1 C6 179.3 180.0
C1 C2 C18 C3 180.5 179.7
C18 C2 C3 C4 180.3 180.3
C18 C2 C3 C7 1.4 359.3
C2 C18 C19 C20 38.0 234.5
C3 C2 C1 C6 359.8 359.7
C1 C2 C3 C18 179.5 180.3
C3 C2 C18 C19 352.4 17.7
C4 C3 C2 C7 178.9 181.0
C2 C3 C4 N9 179.6 179.7
C2 C3 C4 C5 0.7 359.5
C2 C3 C7 C8 179.7 180.5
C2 C3 C7 C11 359.1 0.7
C19 C18 C2 C3 352.4 17.7
C18 C19 C20 O27 105.6 108.1
C18 C19 C20 C23 235.5 228.1
C18 C19 C20 H20 347.8 348.1
O27 C20 C19 C23 230.2 240.0
O27 C20 C19 H20 117.8 120.0
C19 C20 O27 H27 180.0 60.0
C23 C20 C19 H20 247.6 240.0
C19 C20 C23 N28 23.6 60.0
C19 C20 C23 C24 143.2 180.0
C19 C20 C23 H23 265.6 300.0
C19 C20 O27 C23 129.7 120.0
C19 C20 O27 H20 242.0 240.0
C23 C20 O27 H20 112.3 120.0
O27 C20 C23 N28 150.0 180.0
O27 C20 C23 C24 269.7 300.0
O27 C20 C23 H23 32.1 60.0
C19 C20 C23 O27 233.6 240.0
C19 C20 C23 H20 116.9 120.0
O27 C20 C23 H20 243.3 240.0
C23 C20 O27 H27 50.3 299.9
N28 C23 C20 C24 240.3 240.0
N28 C23 C20 H23 118.0 120.0
C20 C23 N28 H281 54.7 60.1
C20 C23 N28 H282 180.0 173.8
C24 C23 C20 H23 237.6 240.0
C20 C23 C24 O26 153.2 299.9
C20 C23 C24 C25 28.8 180.0
C20 C23 C24 H24 271.3 60.0
C19 C20 H20 O27 117.6 120.0
C19 C20 H20 C23 238.9 240.0
O27 C20 H20 C23 121.3 120.0
H20 C20 O27 H27 298.0 180.0
H20 C20 C23 N28 266.7 300.0
H20 C20 C23 C24 26.3 60.0
H20 C20 C23 H23 148.7 180.0
H27 O27 C20 C23 50.3 299.9
H27 O27 C20 H20 298.0 180.0
N28 C23 C20 H20 266.7 300.0
C20 C23 N28 C24 117.7 120.0
C20 C23 N28 H23 240.1 240.0
C24 C23 N28 H23 122.4 120.0
N28 C23 C24 O26 275.3 59.9
N28 C23 C24 C25 151.0 300.0
N28 C23 C24 H24 33.4 180.0
H281 N28 C23 H282 234.7 246.2
C24 C23 C20 H20 26.3 60.0
C20 C23 C24 N28 237.9 240.0
C20 C23 C24 H23 119.9 120.0
N28 C23 C24 H23 242.0 240.0
C24 C23 N28 H281 297.0 300.0
C24 C23 N28 H282 62.3 53.8
O26 C24 C23 C25 124.3 120.0
O26 C24 C23 H24 241.9 239.9
C23 C24 O26 H26 180.0 300.0
C25 C24 C23 H24 117.6 119.9
C23 C24 C25 H251 54.7 180.0
C23 C24 C25 H252 180.0 300.0
C23 C24 C25 H253 305.3 60.0
H23 C23 C20 H20 148.7 180.0
C20 C23 H23 N28 122.3 120.0
C20 C23 H23 C24 242.1 240.0
N28 C23 H23 C24 119.8 120.0
H23 C23 N28 H281 174.6 180.0
H23 C23 N28 H282 299.9 293.8
H23 C23 C24 O26 33.3 180.0
H23 C23 C24 C25 268.9 60.0
H23 C23 C24 H24 151.3 300.1
H281 N28 C23 C24 297.0 300.0
H281 N28 C23 H23 174.6 180.0
C23 N28 H281 H282 126.5 113.8
H282 N28 C23 C24 62.3 53.8
H282 N28 C23 H23 299.9 293.8
C23 N28 H282 H281 234.7 246.2
O26 C24 C23 H23 33.3 180.0
C23 C24 O26 C25 233.4 240.1
C23 C24 O26 H24 115.3 120.1
C25 C24 O26 H24 242.0 240.0
O26 C24 C25 H251 288.4 60.0
O26 C24 C25 H252 53.7 180.0
O26 C24 C25 H253 179.0 300.1
C25 C24 C23 H23 268.9 60.0
C23 C24 C25 O26 126.3 120.0
C23 C24 C25 H24 244.7 240.0
O26 C24 C25 H24 118.5 120.1
C25 C24 O26 H26 306.6 60.0
H251 C25 C24 H252 234.7 240.0
H251 C25 C24 H253 109.4 119.9
H252 C25 C24 H253 234.7 240.0
H24 C24 C23 H23 151.3 300.1
C23 C24 H24 O26 239.4 239.9
C23 C24 H24 C25 120.9 119.9
O26 C24 H24 C25 241.5 240.0
H24 C24 O26 H26 64.7 180.0
H24 C24 C25 H251 170.0 299.9
H24 C24 C25 H252 295.3 60.0
H24 C24 C25 H253 60.5 180.0
H26 O26 C24 C25 306.6 60.0
H26 O26 C24 H24 64.7 180.0
H251 C25 C24 H24 170.0 299.9
C24 C25 H251 H252 126.7 120.0
C24 C25 H251 H253 243.3 240.1
H252 C25 H251 H253 116.7 120.1
H252 C25 C24 H24 295.3 60.0
C24 C25 H252 H251 234.7 240.0
C24 C25 H252 H253 125.3 120.0
H251 C25 H252 H253 250.5 240.0
H253 C25 C24 H24 60.5 180.0
C24 C25 H253 H251 116.7 119.9
C24 C25 H253 H252 233.4 240.0
H251 C25 H253 H252 116.7 120.1
C2 C3 C4 C7 180.8 179.3
C4 C3 C7 C8 0.7 359.6
C4 C3 C7 C11 180.1 179.9
N9 C4 C3 C5 178.9 180.2
C3 C4 N9 C8 1.4 359.7
C3 C4 N9 HN9 181.4 179.8
C3 C4 C5 C6 359.3 0.3
C3 C4 C5 HC5 179.2 180.3
C2 C3 C7 C4 179.0 180.9
C7 C3 C4 N9 358.8 0.4
C7 C3 C4 C5 179.9 180.2
N9 C8 C7 C3 0.1 0.2
O10 C8 C7 C3 179.7 180.3
C8 C7 C3 C11 180.6 179.8
C3 C7 C11 C12 183.7 187.4
C3 C7 C11 H11 3.6 7.4
N9 C4 C3 C7 358.8 0.4
C3 C4 N9 C5 181.3 179.7
N9 C4 C5 C6 180.7 180.0
N9 C4 C5 HC5 0.7 0.0
C8 N9 C4 HN9 180.0 179.9
C4 N9 C8 O10 179.4 180.0
C4 N9 C8 C7 359.1 0.1
C1 C6 C5 C4 0.3 360.0
C5 C4 C3 C7 179.9 180.2
C3 C4 C5 N9 178.5 180.3
C5 C4 N9 C8 180.1 180.0
C5 C4 N9 HN9 0.1 0.0
C6 C5 C4 HC5 180.0 180.0
C4 C5 C6 HC6 180.3 180.0
C3 C7 C8 N9 0.1 0.2
C8 N9 C4 C5 180.1 180.0
C4 N9 C8 HN9 180.0 180.1
O10 C8 N9 C7 180.4 179.9
N9 C8 C7 C11 180.7 180.0
HN9 N9 C4 C5 0.1 0.0
C4 N9 HN9 C8 180.0 179.9
HN9 N9 C8 O10 359.4 359.9
HN9 N9 C8 C7 179.0 180.0
C3 C7 C8 O10 179.7 180.3
O10 C8 N9 HN9 359.4 359.9
N9 C8 O10 C7 179.5 180.1
O10 C8 C7 C11 0.2 0.0
C3 C7 C8 C11 179.4 180.2
C7 C8 N9 HN9 179.0 180.0
N9 C8 C7 O10 180.4 179.9
C8 C7 C11 C12 3.0 7.7
C8 C7 C11 H11 183.0 187.6
C1 C6 C5 HC6 180.0 179.9
C4 C5 C6 HC5 180.0 180.0
C4 C5 HC5 C6 180.0 180.0
HC5 C5 C6 HC6 0.3 0.0
C1 C6 HC6 C5 180.0 180.1
HC6 C6 C5 HC5 0.3 0.0
C3 C7 C11 C8 180.7 179.7
C12 C11 C7 H11 180.0 180.0
C7 C11 C12 C13 178.3 214.3
C7 C11 C12 N16 357.2 34.9
C7 C11 C12 H11 180.0 180.0
C13 C12 C11 N16 181.1 179.5
C11 C12 C13 O21 359.1 0.3
C11 C12 C13 C14 180.4 180.0
C11 C12 N16 C15 179.5 180.0
C11 C12 N16 H16 359.5 359.8
C7 C11 H11 C12 180.0 180.0
H11 C11 C12 C13 358.3 34.3
H11 C11 C12 N16 177.2 214.9
C13 C12 C11 H11 358.3 34.3
C11 C12 C13 N16 179.0 180.5
C13 C12 N16 C15 358.6 0.4
C13 C12 N16 H16 178.6 180.2
O21 C13 C12 C14 178.7 180.4
C12 C13 O21 C22 157.0 179.6
C12 C13 C14 C15 359.0 0.4
C12 C13 C14 H14 179.0 180.2
N16 C12 C11 H11 177.2 214.9
C11 C12 N16 C13 180.9 179.5
N16 C12 C13 O21 180.1 179.9
N16 C12 C13 C14 1.4 359.5
C14 C15 N16 C12 0.7 359.8
C12 N16 C15 H15 180.7 179.7
C15 N16 C12 H16 180.0 180.2
O21 C13 C12 N16 180.1 179.9
C12 C13 O21 C14 181.6 179.6
O21 C13 C14 C15 180.4 180.0
O21 C13 C14 H14 0.4 359.9
C13 O21 C22 H221 54.7 180.0
C13 O21 C22 H222 180.0 300.0
C13 O21 C22 H223 305.3 60.0
C14 C13 C12 N16 1.4 359.5
C12 C13 C14 O21 178.6 180.4
C14 C13 O21 C22 335.4 0.1
C15 C14 C13 H14 180.0 180.1
C13 C14 C15 N16 0.2 359.9
C13 C14 C15 H15 180.2 180.0
C22 O21 C13 C14 335.4 0.1
H221 C22 O21 H222 234.8 240.0
H221 C22 O21 H223 109.5 119.9
H222 C22 O21 H223 234.7 240.0
O21 C22 H221 H222 131.2 120.0
O21 C22 H221 H223 245.7 240.0
H222 C22 H221 H223 114.4 120.0
O21 C22 H222 H221 234.8 240.0
O21 C22 H222 H223 125.3 120.0
H221 C22 H222 H223 250.5 240.0
O21 C22 H223 H221 114.3 120.0
O21 C22 H223 H222 228.8 240.0
H221 C22 H223 H222 114.4 120.0
C12 N16 C15 C14 0.7 359.8
C13 C14 C15 H14 180.0 179.9
N16 C15 C14 H15 180.0 179.9
C14 C15 N16 H16 180.7 180.0
C13 C14 H14 C15 180.0 180.1
H14 C14 C15 N16 180.2 180.0
H14 C14 C15 H15 0.2 0.1
C12 N16 C15 H16 180.0 179.8
N16 C15 C14 H14 180.2 180.0
C14 C15 N16 H15 180.0 180.1
H15 C15 C14 H14 0.2 0.1
C14 C15 H15 N16 180.0 179.9
H15 C15 N16 H16 0.7 359.9
C12 N16 H16 C15 180.0 180.3
H16 N16 C15 H15 0.7 359.9